merge master by Nic-Ma · Pull Request #109 · Nic-Ma/MONAI

Nic-Ma · 2021-05-20T01:55:55Z

Fixes # .

Description

A few sentences describing the changes proposed in this pull request.

Status

Ready/Work in progress/Hold

Types of changes

Non-breaking change (fix or new feature that would not break existing functionality).
Breaking change (fix or new feature that would cause existing functionality to change).
New tests added to cover the changes.
Integration tests passed locally by running ./runtests.sh --codeformat --coverage.
Quick tests passed locally by running ./runtests.sh --quick.
In-line docstrings updated.
Documentation updated, tested make html command in the docs/ folder.

* [DLMED] add AutoAdjustChannel transform Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] add dict version transform Signed-off-by: Nic Ma <nma@nvidia.com> * [MONAI] python code formatting Signed-off-by: monai-bot <monai.miccai2019@gmail.com> * [DLMED] fix doc-build issue Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] fix flake8 issue Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] fix flake8 issue Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] update according to Wenqi's comments Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] update doc-strings Signed-off-by: Nic Ma <nma@nvidia.com> * [MONAI] python code formatting Signed-off-by: monai-bot <monai.miccai2019@gmail.com> Co-authored-by: monai-bot <monai.miccai2019@gmail.com>

Allow missing keys

Signed-off-by: Richard Brown <33289025+rijobro@users.noreply.github.com>

Signed-off-by: Wenqi Li <wenqil@nvidia.com>

* Update load pretrain for densenet Signed-off-by: Yiheng Wang <vennw@nvidia.com> * Fix isort issue Signed-off-by: Yiheng Wang <vennw@nvidia.com>

Signed-off-by: Wenqi Li <wenqil@nvidia.com>

Signed-off-by: Yiheng Wang <vennw@nvidia.com>

* [DLMED] add suqeeze to handler Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] update according to comments Signed-off-by: Nic Ma <nma@nvidia.com>

* fixes #1285 Signed-off-by: Wenqi Li <wenqil@nvidia.com> * adds test Signed-off-by: Wenqi Li <wenqil@nvidia.com>

* fixes #1685 Signed-off-by: Wenqi Li <wenqil@nvidia.com> * add temp test Signed-off-by: Wenqi Li <wenqil@nvidia.com> * adds docstring Signed-off-by: Wenqi Li <wenqil@nvidia.com> * fixes dist sampler Signed-off-by: Wenqi Li <wenqil@nvidia.com> * remove temp tests Signed-off-by: Wenqi Li <wenqil@nvidia.com> * fixes type hint issue Signed-off-by: Wenqi Li <wenqil@nvidia.com>

* fixes data type in switching Signed-off-by: Wenqi Li <wenqil@nvidia.com> * [MONAI] python code formatting Signed-off-by: monai-bot <monai.miccai2019@gmail.com> Co-authored-by: monai-bot <monai.miccai2019@gmail.com>

* Implement CuImageReader and OpenSlideReader Signed-off-by: Behrooz <3968947+behxyz@users.noreply.github.com> * Add unittests for CuImageReader Signed-off-by: Behrooz <3968947+behxyz@users.noreply.github.com> * Add unittests for OpenSlideReader Signed-off-by: Behrooz <3968947+behxyz@users.noreply.github.com> * Sort imports Signed-off-by: Behrooz <3968947+behxyz@users.noreply.github.com> * Add correct boundaries Signed-off-by: Behrooz <3968947+behxyz@users.noreply.github.com> * Add test cases for reading patches on a grid for CuImage Signed-off-by: Behrooz <3968947+behxyz@users.noreply.github.com> * Add patch whole slide imaging dataset for pathology Signed-off-by: Behrooz <3968947+behxyz@users.noreply.github.com> * Add test case for read patches for OpenSlide Signed-off-by: Behrooz <3968947+behxyz@users.noreply.github.com> * flake8 and few minor changes Signed-off-by: Behrooz <3968947+behxyz@users.noreply.github.com> * black Signed-off-by: Behrooz <3968947+behxyz@users.noreply.github.com> * flake8 Signed-off-by: Behrooz <3968947+behxyz@users.noreply.github.com> * Add kwargs to CuImageReader and OpenSlideReader's read method Signed-off-by: Behrooz <3968947+behxyz@users.noreply.github.com> * Change the type hint from np.dtype to DTypeLike Signed-off-by: Behrooz <3968947+behxyz@users.noreply.github.com> * Fix a bug Signed-off-by: Behrooz <3968947+behxyz@users.noreply.github.com> * Implement WSIReader and unittests Signed-off-by: Behrooz <3968947+behxyz@users.noreply.github.com> * Minor updates Signed-off-by: Behrooz <3968947+behxyz@users.noreply.github.com> * Fix few typing issues Signed-off-by: Behrooz <3968947+behxyz@users.noreply.github.com> * Revert datasets Signed-off-by: Behrooz <3968947+behxyz@users.noreply.github.com> * Add shape property to openslide image object Reverse size to be compatible with output size (hxw) Signed-off-by: Behrooz <3968947+behxyz@users.noreply.github.com> * Add untittest for loading the whole image Reverse the size accroding to the WSIReader Signed-off-by: Behrooz <3968947+behxyz@users.noreply.github.com> * Update the whole image size Signed-off-by: Behrooz <3968947+behxyz@users.noreply.github.com> * Remove optional size Signed-off-by: Behrooz <3968947+behxyz@users.noreply.github.com> * Remove optional dtype Signed-off-by: Behrooz <3968947+behxyz@users.noreply.github.com> * Remove _get_spatial_shape return type Signed-off-by: Behrooz <3968947+behxyz@users.noreply.github.com> * Reverse the orders of dimensions of `location` to be compatible with image shape Signed-off-by: Behrooz <3968947+behxyz@users.noreply.github.com> * Change test cases to use smaller image and revese location's dimensions Signed-off-by: Behrooz <3968947+behxyz@users.noreply.github.com> * Replace the test TIFF and some upgrades Signed-off-by: Behrooz <3968947+behxyz@users.noreply.github.com> * Update dependencies for OpenSlide Signed-off-by: Behrooz <3968947+behxyz@users.noreply.github.com> * Update unittests for OpenSlide and CuImage Signed-off-by: Behrooz <3968947+behxyz@users.noreply.github.com> * Fix openslide dependency Signed-off-by: Behrooz <3968947+behxyz@users.noreply.github.com> * Fix doc dependencies Signed-off-by: Behrooz <3968947+behxyz@users.noreply.github.com> * Minor changes Signed-off-by: Behrooz <3968947+behxyz@users.noreply.github.com> * Few variable name changes Signed-off-by: Behrooz <3968947+behxyz@users.noreply.github.com> * Add EnsureChannelFirst Signed-off-by: Behrooz <3968947+behxyz@users.noreply.github.com> * Add metadata to WSIReader Signed-off-by: Behrooz <3968947+behxyz@users.noreply.github.com>

Signed-off-by: Nic Ma <nma@nvidia.com>

Signed-off-by: Behrooz <3968947+behxyz@users.noreply.github.com>

* update docstring Signed-off-by: Wenqi Li <wenqil@nvidia.com> * revise docstring Signed-off-by: Wenqi Li <wenqil@nvidia.com>

* [DLMED] add Affined transform Signed-off-by: Nic Ma <nma@nvidia.com> * [MONAI] python code formatting Signed-off-by: monai-bot <monai.miccai2019@gmail.com> Co-authored-by: monai-bot <monai.miccai2019@gmail.com>

* update for torch 1.8.0 Signed-off-by: Wenqi Li <wenqil@nvidia.com> * mute codecov upload error Signed-off-by: Wenqi Li <wenqil@nvidia.com>

Signed-off-by: Nic Ma <nma@nvidia.com>

with allow_missing_keys_mode

Signed-off-by: Wenqi Li <wenqil@nvidia.com>

* fixes #1500 update grid dataset to support patch level transforms Signed-off-by: Wenqi Li <wenqil@nvidia.com>

* [DLMED] update type of arg in workflows Signed-off-by: Nic Ma <nma@nvidia.com> * [MONAI] python code formatting Signed-off-by: monai-bot <monai.miccai2019@gmail.com> * [DLMED] fix flake8 issue Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] fix flake8 issue Signed-off-by: Nic Ma <nma@nvidia.com> * [MONAI] python code formatting Signed-off-by: monai-bot <monai.miccai2019@gmail.com> Co-authored-by: monai-bot <monai.miccai2019@gmail.com>

* 1651 implement RegUNet Signed-off-by: kate-sann5100 <yiwen.li@st-annes.ox.ac.uk>

Signed-off-by: Wenqi Li <wenqil@nvidia.com>

* Update MONAI Docker with OpenSlide dependencies Signed-off-by: Behrooz <3968947+behxyz@users.noreply.github.com> * Update cron job to install apt dependencies Signed-off-by: Behrooz <3968947+behxyz@users.noreply.github.com>

* use eval for getting class_idx for gradcam

* fixes unit test Signed-off-by: Wenqi Li <wenqil@nvidia.com> * fixes timed call tests Signed-off-by: Wenqi Li <wenqil@nvidia.com>

basic inverse API

Signed-off-by: Richard Brown <33289025+rijobro@users.noreply.github.com>

* [DLMED] add notnans to summary Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] fix bug in the dist test Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] enhance the percent Signed-off-by: Nic Ma <nma@nvidia.com> * [MONAI] python code formatting Signed-off-by: monai-bot <monai.miccai2019@gmail.com> * [DLMED] update tests Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] update according to comments Signed-off-by: Nic Ma <nma@nvidia.com> Co-authored-by: monai-bot <monai.miccai2019@gmail.com>

fix cachedataset w persistent workers problem by deep copying first non-deterministic transform

* adding proposal implementation for reg. metrics Signed-off-by: masadcv <muhammad.asad@kcl.ac.uk> * add ignite wrappers regression metrics, needs test Signed-off-by: masadcv <muhammad.asad@kcl.ac.uk> * refactoring and adding docstrings with equations Signed-off-by: masadcv <muhammad.asad@kcl.ac.uk>

* [DLMED] enhance unit test of UNet Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] enhance tests Signed-off-by: Nic Ma <nma@nvidia.com>

* [DLMED] add Invertd transform Signed-off-by: Nic Ma <nma@nvidia.com> * [MONAI] python code formatting Signed-off-by: monai-bot <monai.miccai2019@gmail.com> * [DLMED] fix doc build Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] skip min test Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] fix flake8 issue Signed-off-by: Nic Ma <nma@nvidia.com> * [MONAI] python code formatting Signed-off-by: monai-bot <monai.miccai2019@gmail.com> * [DLMED] fix CI test Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] enhance docs Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] enhance doc-string Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] update according to comments Signed-off-by: Nic Ma <nma@nvidia.com> Co-authored-by: monai-bot <monai.miccai2019@gmail.com>

Signed-off-by: Richard Brown <33289025+rijobro@users.noreply.github.com> Co-authored-by: Eric Kerfoot <17726042+ericspod@users.noreply.github.com>

* [DLMED] enhance Invertd and SaveImage Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] add more test Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] remove unwanted files Signed-off-by: Nic Ma <nma@nvidia.com> * [MONAI] python code formatting Signed-off-by: monai-bot <monai.miccai2019@gmail.com> * [DLMED] fix flake8 issue Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] enhance doc-string Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] update according to comments Signed-off-by: Nic Ma <nma@nvidia.com> Co-authored-by: monai-bot <monai.miccai2019@gmail.com>

Signed-off-by: Richard Brown <33289025+rijobro@users.noreply.github.com>

* Add reference for surface distance metric Signed-off-by: Yiheng Wang <vennw@nvidia.com> * Add reference for hausdorff distance Signed-off-by: Yiheng Wang <vennw@nvidia.com>

* [DLMED] add max_roi_size Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] add max_roi_size Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] optimize logic Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] update according to comments Signed-off-by: Nic Ma <nma@nvidia.com>

fix set visible devices

* better way of managing Cache Signed-off-by: Coen <coengruijt@gmail.com> * Update test_smartcachedataset.py Signed-off-by: Coen <coengruijt@gmail.com>

* fixes docstring Signed-off-by: Wenqi Li <wenqil@nvidia.com> * 2099 docstring updates Signed-off-by: Wenqi Li <wenqil@nvidia.com>

Signed-off-by: Wenqi Li <wenqil@nvidia.com>

test network consistency

* enhance norm and act layers Signed-off-by: Yiheng Wang <vennw@nvidia.com> * write generic norm and act layers Signed-off-by: Yiheng Wang <vennw@nvidia.com> * Fix flake8 errors Signed-off-by: Yiheng Wang <vennw@nvidia.com>

Signed-off-by: Wenqi Li <wenqil@nvidia.com>

gibbs transform

* enhance get layers Signed-off-by: Wenqi Li <wenqil@nvidia.com> * codeformat/typo fixes Signed-off-by: Wenqi Li <wenqil@nvidia.com> * fixes type errors Signed-off-by: Wenqi Li <wenqil@nvidia.com>

* [DLMED] add RandScaleCrop Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] update according to comments Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] update for corner case Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] fix typo Signed-off-by: Nic Ma <nma@nvidia.com> * [MONAI] python code formatting Signed-off-by: monai-bot <monai.miccai2019@gmail.com> Co-authored-by: monai-bot <monai.miccai2019@gmail.com>

Signed-off-by: Wenqi Li <wenqil@nvidia.com>

* Add array and dictionary based CoordConv transforms Signed-off-by: Mark <mark.graham@kcl.ac.uk> * Add comments and input checks Signed-off-by: Mark Graham <markgraham539@gmail.com> * Add docs for CoordConv Signed-off-by: Mark Graham <markgraham539@gmail.com> * Add tests for CoordConv Signed-off-by: Mark Graham <markgraham539@gmail.com> * Renames to AddCoordinateChannels and simplifies transform code Signed-off-by: Mark Graham <markgraham539@gmail.com> * Test input channel is unchanged and shorten code more Signed-off-by: Mark Graham <markgraham539@gmail.com> * [MONAI] python code formatting Signed-off-by: monai-bot <monai.miccai2019@gmail.com> Co-authored-by: Richard Brown <33289025+rijobro@users.noreply.github.com> Co-authored-by: monai-bot <monai.miccai2019@gmail.com>

Signed-off-by: Yiheng Wang <vennw@nvidia.com>

* [DLMED] add CenterScaleCrop Signed-off-by: Nic Ma <nma@nvidia.com> * [MONAI] python code formatting Signed-off-by: monai-bot <monai.miccai2019@gmail.com> * [DLMED] fix typo Signed-off-by: Nic Ma <nma@nvidia.com> Co-authored-by: monai-bot <monai.miccai2019@gmail.com>

Signed-off-by: Richard Brown <33289025+rijobro@users.noreply.github.com>

* [DLMED] enhance CSVSaver Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] add unit tests Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] fix test errors Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] update according to comments Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] update according to comments Signed-off-by: Nic Ma <nma@nvidia.com> * [MONAI] python code formatting Signed-off-by: monai-bot <monai.miccai2019@gmail.com> * [DLMED] update accoring to comments Signed-off-by: Nic Ma <nma@nvidia.com> Co-authored-by: monai-bot <monai.miccai2019@gmail.com>

)

* [DLMED] add meta_key arg to components Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] fix CI test Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] fix flake8 Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] update according to comments Signed-off-by: Nic Ma <nma@nvidia.com> * [MONAI] python code formatting Signed-off-by: monai-bot <monai.miccai2019@gmail.com> * [DLMED] read-only transforms can share same meta data for keys Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] add more unit tests Signed-off-by: Nic Ma <nma@nvidia.com> Co-authored-by: monai-bot <monai.miccai2019@gmail.com>

Signed-off-by: chaliebudd <charles.budd@kcl.ac.uk> Co-authored-by: Wenqi Li <wenqil@nvidia.com>

Nic-Ma and others added 30 commits March 2, 2021 16:34

[1662] Allow missing keys (#1676)

421c0a9

Allow missing keys

nifti saver squeeze dims (#1680)

27543c8

Signed-off-by: Richard Brown <33289025+rijobro@users.noreply.github.com>

improve gradcam doc (#1682)

b533afd

Signed-off-by: Richard Brown <33289025+rijobro@users.noreply.github.com>

fixes integration tests (#1683)

7cfb529

Signed-off-by: Wenqi Li <wenqil@nvidia.com>

Update load pretrain for densenet (#1684)

4bd9cf3

* Update load pretrain for densenet Signed-off-by: Yiheng Wang <vennw@nvidia.com> * Fix isort issue Signed-off-by: Yiheng Wang <vennw@nvidia.com>

revise the dtype according to the discussion (#1671)

8cc200f

Signed-off-by: Wenqi Li <wenqil@nvidia.com>

Fix senet pretrained weights issue (#1689)

ac9f953

Signed-off-by: Yiheng Wang <vennw@nvidia.com>

1680 Add squeeze SegmentationSaver handler (#1686)

380f042

* [DLMED] add suqeeze to handler Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] update according to comments Signed-off-by: Nic Ma <nma@nvidia.com>

1285 adds module list (#1690)

114faf0

* fixes #1285 Signed-off-by: Wenqi Li <wenqil@nvidia.com> * adds test Signed-off-by: Wenqi Li <wenqil@nvidia.com>

fixes data type in switching (#1694)

75b5772

* fixes data type in switching Signed-off-by: Wenqi Li <wenqil@nvidia.com> * [MONAI] python code formatting Signed-off-by: monai-bot <monai.miccai2019@gmail.com> Co-authored-by: monai-bot <monai.miccai2019@gmail.com>

[DLMED] add WSIReader to LoadImage (#1695)

232e8a5

Signed-off-by: Nic Ma <nma@nvidia.com>

Raise import error for openslide and cuimage (#1699)

66811fe

Signed-off-by: Behrooz <3968947+behxyz@users.noreply.github.com>

1604 Revise docstring cam (#1705)

b25b3d3

* update docstring Signed-off-by: Wenqi Li <wenqil@nvidia.com> * revise docstring Signed-off-by: Wenqi Li <wenqil@nvidia.com>

1704 Add Affined transform (#1709)

ce6628a

* [DLMED] add Affined transform Signed-off-by: Nic Ma <nma@nvidia.com> * [MONAI] python code formatting Signed-off-by: monai-bot <monai.miccai2019@gmail.com> Co-authored-by: monai-bot <monai.miccai2019@gmail.com>

1693 update for pytorch 1.8 (#1700)

133f42a

* update for torch 1.8.0 Signed-off-by: Wenqi Li <wenqil@nvidia.com> * mute codecov upload error Signed-off-by: Wenqi Li <wenqil@nvidia.com>

[DLMED] update datasets (#1712)

634b32d

Signed-off-by: Nic Ma <nma@nvidia.com>

with allow_missing_keys_mode (#1714)

08af0cc

with allow_missing_keys_mode

update links (#1717)

f4560a1

Signed-off-by: Wenqi Li <wenqil@nvidia.com>

1500-update grid dataset to support patch level transforms (#1679)

cbddce9

* fixes #1500 update grid dataset to support patch level transforms Signed-off-by: Wenqi Li <wenqil@nvidia.com>

1651 implement RegUNet (#1658)

78ec66f

* 1651 implement RegUNet Signed-off-by: kate-sann5100 <yiwen.li@st-annes.ox.ac.uk>

remove print msg (#1730)

ea1d04b

Signed-off-by: Wenqi Li <wenqil@nvidia.com>

Fix MONAI docker dependency (#1731)

a462714

* Update MONAI Docker with OpenSlide dependencies Signed-off-by: Behrooz <3968947+behxyz@users.noreply.github.com> * Update cron job to install apt dependencies Signed-off-by: Behrooz <3968947+behxyz@users.noreply.github.com>

[1710] Gradcam eval (#1734)

d4c201e

* use eval for getting class_idx for gradcam

fixes unit test (#1735)

c362beb

* fixes unit test Signed-off-by: Wenqi Li <wenqil@nvidia.com> * fixes timed call tests Signed-off-by: Wenqi Li <wenqil@nvidia.com>

basic inverse API (#1720)

0b1fc4e

basic inverse API

improve decollate test for set_determinism (#1736)

c3e5a69

Signed-off-by: Richard Brown <33289025+rijobro@users.noreply.github.com>

Nic-Ma and others added 29 commits May 7, 2021 11:46

fix cachedataset w persistent workers problem by deep copying (#2121)

4259151

fix cachedataset w persistent workers problem by deep copying first non-deterministic transform

2155 Enhance tests of UNet for user's case (#2160)

68e2d78

* [DLMED] enhance unit test of UNet Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] enhance tests Signed-off-by: Nic Ma <nma@nvidia.com>

delete set_visible_devices (#2168)

eca3f19

Signed-off-by: Richard Brown <33289025+rijobro@users.noreply.github.com> Co-authored-by: Eric Kerfoot <17726042+ericspod@users.noreply.github.com>

fix typo (#2176)

3045ade

Signed-off-by: Richard Brown <33289025+rijobro@users.noreply.github.com>

Add reference for surface distance metric (#2182)

6b0df49

* Add reference for surface distance metric Signed-off-by: Yiheng Wang <vennw@nvidia.com> * Add reference for hausdorff distance Signed-off-by: Yiheng Wang <vennw@nvidia.com>

fix set visible devices (#2174)

6c0d8d7

fix set visible devices

More efficient SmartCacheLoader (#2181)

4ef7d22

* better way of managing Cache Signed-off-by: Coen <coengruijt@gmail.com> * Update test_smartcachedataset.py Signed-off-by: Coen <coengruijt@gmail.com>

2099 - enhances dataloader/randomizable docstrings (#2188)

a5cf253

* fixes docstring Signed-off-by: Wenqi Li <wenqil@nvidia.com> * 2099 docstring updates Signed-off-by: Wenqi Li <wenqil@nvidia.com>

tested (#2192)

b94fe25

Signed-off-by: Wenqi Li <wenqil@nvidia.com>

initial network consistency test (#2171)

e68af74

test network consistency

enhance norm and act layers (#2166)

29a0373

* enhance norm and act layers Signed-off-by: Yiheng Wang <vennw@nvidia.com> * write generic norm and act layers Signed-off-by: Yiheng Wang <vennw@nvidia.com> * Fix flake8 errors Signed-off-by: Yiheng Wang <vennw@nvidia.com>

update msg (#2197)

05e1ec2

Signed-off-by: Wenqi Li <wenqil@nvidia.com>

Added Gibbs transform (#2163)

0e6f945

gibbs transform

enhance get layers API (#2199)

95726b0

* enhance get layers Signed-off-by: Wenqi Li <wenqil@nvidia.com> * codeformat/typo fixes Signed-off-by: Wenqi Li <wenqil@nvidia.com> * fixes type errors Signed-off-by: Wenqi Li <wenqil@nvidia.com>

fixes logo link (#2202)

bbca50d

Signed-off-by: Wenqi Li <wenqil@nvidia.com>

Add warnings for inf/nan surface distance (#2205)

ca0bda1

Signed-off-by: Yiheng Wang <vennw@nvidia.com>

allow sequence for network consistency (#2209)

fed0136

Signed-off-by: Richard Brown <33289025+rijobro@users.noreply.github.com>

2041 - fixing main/releasing branch CI/CD; update contributing.md (#2123

e6258c9

)

cleaning allocated memory (#2216)

26ee695

Signed-off-by: chaliebudd <charles.budd@kcl.ac.uk> Co-authored-by: Wenqi Li <wenqil@nvidia.com>

Nic-Ma merged commit e74c4af into Nic-Ma:2026-temp-combine-data May 20, 2021

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merge master#109

merge master#109
Nic-Ma merged 266 commits into
Nic-Ma:2026-temp-combine-datafrom
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Nic-Ma commented May 20, 2021

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Nic-Ma commented May 20, 2021

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