Skip to content

LIMS-1435: Put CCP4 location into config variable#821

Merged
ndg63276 merged 1 commit into
pre-release/2024-R4.2from
fix/LIMS-1435/put-ccp4-path-into-variable
Sep 3, 2024
Merged

LIMS-1435: Put CCP4 location into config variable#821
ndg63276 merged 1 commit into
pre-release/2024-R4.2from
fix/LIMS-1435/put-ccp4-path-into-variable

Conversation

@ndg63276
Copy link
Copy Markdown
Collaborator

JIRA ticket: LIMS-1435

Summary:

CCP4 has been updated, so the old path no longer works, meaning dimple maps show no electron density. The path shouldn't be hard-coded though.

Changes:

  • Add $ccp4_location config variable
  • Pass that variable into the mtz2map.sh script

To test:

  • Add the config variable with $ccp4_location = '/dls_sw/apps/ccp4/latest/ccp4-9';
  • Open a data collection with a dimple result, eg /dc/visit/nt37104-106/id/14642946
  • Click on the Downstream Processing bar to show the dimple results, then click "Map / Model Viewer"
  • Check the electron density is shown in blue in the centre of the image
    image
  • Check you can move/rotate the image

@NKatti2011 NKatti2011 self-requested a review August 28, 2024 14:11
Copy link
Copy Markdown
Collaborator

@NKatti2011 NKatti2011 left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

LGTM and tested

@ndg63276 ndg63276 changed the base branch from master to pre-release/2024-R4.2 September 3, 2024 08:17
@ndg63276 ndg63276 merged commit 68ae4f5 into pre-release/2024-R4.2 Sep 3, 2024
@ndg63276 ndg63276 deleted the fix/LIMS-1435/put-ccp4-path-into-variable branch September 3, 2024 08:21
@ndg63276 ndg63276 restored the fix/LIMS-1435/put-ccp4-path-into-variable branch September 3, 2024 10:57
@ndg63276 ndg63276 deleted the fix/LIMS-1435/put-ccp4-path-into-variable branch September 10, 2024 10:50
ndg63276 added a commit that referenced this pull request Sep 17, 2024
* LIMS-1432: Add shelxt downstream view (#818)

* LIMS-1436: Use auth provider provided logout URL when SSO is enabled (#822)

* LIMS-1108: Improve message re international shipping (#721)

* LIMS-1396: Use shipping service callback URL to only send emails once shipment is booked (#814)

* LIMS-1435: Put CCP4 location into config variable (#821)

* LIMS-656: Show auto subsamples if they have data (#817)

---------

Co-authored-by: Dean Keeble <dean.keeble@diamond.ac.uk>
Co-authored-by: Guilherme Francisco <guilherme.de-freitas@diamond.ac.uk>
Co-authored-by: Mark Williams <mark.williams@diamond.ac.uk>
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Projects

None yet

Development

Successfully merging this pull request may close these issues.

2 participants