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Adds Transformation class#357

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BradyPlanden merged 25 commits into
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92-transformations-for-varying-scale-parameters
Aug 1, 2024
Merged

Adds Transformation class#357
BradyPlanden merged 25 commits into
developfrom
92-transformations-for-varying-scale-parameters

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@BradyPlanden

@BradyPlanden BradyPlanden commented Jun 12, 2024

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Description

Adds a transformation class for BaseCost classes. This class applies a transformation to the parameter space to a latent space for improved optimisation / sampling.

Issue reference

Fixes #92

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@BradyPlanden BradyPlanden linked an issue Jun 12, 2024 that may be closed by this pull request
@codecov

codecov Bot commented Jun 12, 2024

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Codecov Report

Attention: Patch coverage is 99.17012% with 2 lines in your changes missing coverage. Please review.

Project coverage is 98.28%. Comparing base (d7e2f12) to head (8dca6d1).
Report is 560 commits behind head on develop.

Files with missing lines Patch % Lines
pybop/optimisers/base_pints_optimiser.py 83.33% 1 Missing ⚠️
pybop/transformation/base_transformation.py 97.77% 1 Missing ⚠️
Additional details and impacted files
@@             Coverage Diff             @@
##           develop     #357      +/-   ##
===========================================
+ Coverage    98.11%   98.28%   +0.16%     
===========================================
  Files           44       46       +2     
  Lines         2708     2907     +199     
===========================================
+ Hits          2657     2857     +200     
+ Misses          51       50       -1     

☔ View full report in Codecov by Sentry.
📢 Have feedback on the report? Share it here.

@BradyPlanden BradyPlanden marked this pull request as ready for review June 18, 2024 08:10
@BradyPlanden BradyPlanden mentioned this pull request Jun 19, 2024
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@BradyPlanden BradyPlanden force-pushed the 92-transformations-for-varying-scale-parameters branch from 3ba0b1f to 4e1f845 Compare July 3, 2024 09:43
Comment thread examples/scripts/spm_CMAES.py Outdated
Comment thread pybop/optimisers/base_pints_optimiser.py Outdated
Comment thread pybop/optimisers/base_pints_optimiser.py Outdated
Comment thread pybop/optimisers/base_pints_optimiser.py Outdated
Comment thread pybop/optimisers/base_pints_optimiser.py Outdated

@NicolaCourtier NicolaCourtier left a comment

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Great work implementing the transformation classes! To retain modularity, let's make transformation a property of the Parameters class (as well as each Parameter) instead of the cost/optimiser.

Comment thread examples/standalone/cost.py
Comment thread pybop/costs/base_cost.py Outdated
Comment thread pybop/parameters/parameter.py Outdated
Comment thread pybop/costs/base_cost.py Outdated

@NicolaCourtier NicolaCourtier left a comment

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Thanks @BradyPlanden, transformations look like a useful addition!

Comment thread pybop/parameters/parameter.py Outdated
@BradyPlanden BradyPlanden force-pushed the 92-transformations-for-varying-scale-parameters branch from 3fd3ea3 to 8dca6d1 Compare August 1, 2024 13:46
@BradyPlanden BradyPlanden merged commit 66cf05f into develop Aug 1, 2024
@BradyPlanden BradyPlanden deleted the 92-transformations-for-varying-scale-parameters branch August 1, 2024 14:15
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Transformations for varying scale parameters

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