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fixup! CONTRIBUTING.md: add guide for first-time contributors#3

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Mar 6, 2018
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fixup! CONTRIBUTING.md: add guide for first-time contributors#3
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@dscho dscho commented Mar 6, 2018

A couple of suggested touchups.

Signed-off-by: Johannes Schindelin johannes.schindelin@gmx.de

A couple of suggested touchups.

Signed-off-by: Johannes Schindelin <johannes.schindelin@gmx.de>
@derrickstolee derrickstolee merged commit ef77b24 into derrickstolee:contributing Mar 6, 2018
derrickstolee pushed a commit that referenced this pull request Apr 2, 2018
The function ce_write_entry() uses a 'self-initialised' variable
construct, for the symbol 'saved_namelen', to suppress a gcc
'-Wmaybe-uninitialized' warning, given that the warning is a false
positive.

For the purposes of this discussion, the ce_write_entry() function has
three code blocks of interest, that look like so:

        /* block #1 */
        if (ce->ce_flags & CE_STRIP_NAME) {
                saved_namelen = ce_namelen(ce);
                ce->ce_namelen = 0;
        }

        /* block #2 */
        /*
	 * several code blocks that contain, among others, calls
         * to copy_cache_entry_to_ondisk(ondisk, ce);
         */

        /* block #3 */
        if (ce->ce_flags & CE_STRIP_NAME) {
                ce->ce_namelen = saved_namelen;
                ce->ce_flags &= ~CE_STRIP_NAME;
        }

The warning implies that gcc thinks it is possible that the first
block is not entered, the calls to copy_cache_entry_to_ondisk()
could toggle the CE_STRIP_NAME flag on, thereby entering block #3
with saved_namelen unset. However, the copy_cache_entry_to_ondisk()
function does not write to ce->ce_flags (it only reads). gcc could
easily determine this, since that function is local to this file,
but it obviously doesn't.

In order to suppress this warning, we make it clear to the reader
(human and compiler), that block #3 will only be entered when the
first block has been entered, by introducing a new 'stripped_name'
boolean variable. We also take the opportunity to change the type
of 'saved_namelen' to 'unsigned int' to match ce->ce_namelen.

Signed-off-by: Ramsay Jones <ramsay@ramsayjones.plus.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
derrickstolee pushed a commit that referenced this pull request Dec 26, 2019
…ev()

In 'builtin/name-rev.c' in the name_rev() function there is a loop
iterating over all parents of the given commit, and the loop body
looks like this:

  if (parent_number > 1) {
      if (generation > 0)
          // branch #1
          new_name = ...
      else
          // branch #2
          new_name = ...
      name_rev(parent, new_name, ...);
  } else {
      // branch #3
      name_rev(...);
  }

These conditions are not covered properly in the test suite.  As far
as purely test coverage goes, they are all executed several times over
in 't6120-describe.sh'.  However, they don't directly influence the
command's output, because the repository used in that test script
contains several branches and tags pointing somewhere into the middle
of the commit DAG, and thus result in a better name for the
to-be-named commit.  This can hide bugs: e.g. by replacing the
'new_name' parameter of the first recursive name_rev() call with
'tip_name' (effectively making both branch #1 and #2 a noop) 'git
name-rev --all' shows thousands of bogus names in the Git repository,
but the whole test suite still passes successfully.  In an early
version of a later patch in this series I managed to mess up all three
branches (at once!), but the test suite still passed.

So add a new test case that operates on the following history:

  A--------------master
   \            /
    \----------M2
     \        /
      \---M1-C
       \ /
        B

and names the commit 'B' to make sure that all three branches are
crucial to determine 'B's name:

  - There is only a single ref, so all names are based on 'master',
    without any undesired interference from other refs.

  - Each time name_rev() follows the second parent of a merge commit,
    it appends "^2" to the name.  Following 'master's second parent
    right at the start ensures that all commits on the ancestry path
    from 'master' to 'B' have a different base name from the original
    'tip_name' of the very first name_rev() invocation.  Currently,
    while name_rev() is recursive, it doesn't matter, but it will be
    necessary to properly cover all three branches after the recursion
    is eliminated later in this series.

  - Following 'M2's second parent makes sure that branch #2 (i.e. when
    'generation = 0') affects 'B's name.

  - Following the only parent of the non-merge commit 'C' ensures that
    branch #3 affects 'B's name, and that it increments 'generation'.

  - Coming from 'C' 'generation' is 1, thus following 'M1's second
    parent makes sure that branch #1 affects 'B's name.

Signed-off-by: SZEDER Gábor <szeder.dev@gmail.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
derrickstolee pushed a commit that referenced this pull request Feb 7, 2020
Recent versions of the gcc and clang Address Sanitizer produce test
failures related to regexec(). This triggers with gcc-10 and clang-8
(but not gcc-9 nor clang-7). Running:

  make CC=gcc-10 SANITIZE=address test

results in failures in t4018, t3206, and t4062.

The cause seems to be that when built with ASan, we use a different
version of regexec() than normal. And this version doesn't understand
the REG_STARTEND flag. Here's my evidence supporting that.

The failure in t4062 is an ASan warning:

  expecting success of 4062.2 '-G matches':
  	git diff --name-only -G "^(0{64}){64}$" HEAD^ >out &&
  	test 4096-zeroes.txt = "$(cat out)"

  =================================================================
  ==672994==ERROR: AddressSanitizer: heap-buffer-overflow on address 0x7fa76f672000 at pc 0x7fa7726f75b6 bp 0x7ffe41bdda70 sp 0x7ffe41bdd220
  READ of size 4097 at 0x7fa76f672000 thread T0
      #0 0x7fa7726f75b5  (/lib/x86_64-linux-gnu/libasan.so.6+0x4f5b5)
      #1 0x562ae0c9c40e in regexec_buf /home/peff/compile/git/git-compat-util.h:1117
      #2 0x562ae0c9c40e in diff_grep /home/peff/compile/git/diffcore-pickaxe.c:52
      #3 0x562ae0c9cc28 in pickaxe_match /home/peff/compile/git/diffcore-pickaxe.c:166
      [...]

In this case we're looking in a buffer which was mmap'd via
reuse_worktree_file(), and whose size is 4096 bytes. But libasan's
regex tries to look at byte 4097 anyway! If we tweak Git like this:

  diff --git a/diff.c b/diff.c
  index 8e2914c..cfae60c120 100644
  --- a/diff.c
  +++ b/diff.c
  @@ -3880,7 +3880,7 @@ static int reuse_worktree_file(struct index_state *istate,
           */
          if (ce_uptodate(ce) ||
              (!lstat(name, &st) && !ie_match_stat(istate, ce, &st, 0)))
  -               return 1;
  +               return 0;

          return 0;
   }

to use a regular buffer (with a trailing NUL) instead of an mmap, then
the complaint goes away.

The other failures are actually diff output with an incorrect funcname
header. If I instrument xdiff to show the funcname matching like so:

  diff --git a/xdiff-interface.c b/xdiff-interface.c
  index 8509f9e..f6c3dc1986 100644
  --- a/xdiff-interface.c
  +++ b/xdiff-interface.c
  @@ -197,6 +197,7 @@ struct ff_regs {
   	struct ff_reg {
   		regex_t re;
   		int negate;
  +		char *printable;
   	} *array;
   };

  @@ -218,7 +219,12 @@ static long ff_regexp(const char *line, long len,

   	for (i = 0; i < regs->nr; i++) {
   		struct ff_reg *reg = regs->array + i;
  -		if (!regexec_buf(&reg->re, line, len, 2, pmatch, 0)) {
  +		int ret = regexec_buf(&reg->re, line, len, 2, pmatch, 0);
  +		warning("regexec %s:\n  regex: %s\n  buf: %.*s",
  +			ret == 0 ? "matched" : "did not match",
  +			reg->printable,
  +			(int)len, line);
  +		if (!ret) {
   			if (reg->negate)
   				return -1;
   			break;
  @@ -264,6 +270,7 @@ void xdiff_set_find_func(xdemitconf_t *xecfg, const char *value, int cflags)
   			expression = value;
   		if (regcomp(&reg->re, expression, cflags))
   			die("Invalid regexp to look for hunk header: %s", expression);
  +		reg->printable = xstrdup(expression);
   		free(buffer);
   		value = ep + 1;
   	}

then when compiling with ASan and gcc-10, running the diff from t4018.66
produces this:

  $ git diff -U1 cpp-skip-access-specifiers
  warning: regexec did not match:
    regex: ^[     ]*[A-Za-z_][A-Za-z_0-9]*:[[:space:]]*($|/[/*])
    buf: private:
  warning: regexec matched:
    regex: ^((::[[:space:]]*)?[A-Za-z_].*)$
    buf: private:
  diff --git a/cpp-skip-access-specifiers b/cpp-skip-access-specifiers
  index 4d4a9db..ebd6f42 100644
  --- a/cpp-skip-access-specifiers
  +++ b/cpp-skip-access-specifiers
  @@ -6,3 +6,3 @@ private:
          void DoSomething();
          int ChangeMe;
  };
          void DoSomething();
  -       int ChangeMe;
  +       int IWasChanged;
   };

That first regex should match (and is negated, so it should be telling
us _not_ to match "private:"). But it wouldn't if regexec() is looking
at the whole buffer, and not just the length-limited line we've fed to
regexec_buf(). So this is consistent again with REG_STARTEND being
ignored.

The correct output (compiling without ASan, or gcc-9 with Asan) looks
like this:

  warning: regexec matched:
    regex: ^[     ]*[A-Za-z_][A-Za-z_0-9]*:[[:space:]]*($|/[/*])
    buf: private:
  [...more lines that we end up not using...]
  warning: regexec matched:
    regex: ^((::[[:space:]]*)?[A-Za-z_].*)$
    buf: class RIGHT : public Baseclass
  diff --git a/cpp-skip-access-specifiers b/cpp-skip-access-specifiers
  index 4d4a9db..ebd6f42 100644
  --- a/cpp-skip-access-specifiers
  +++ b/cpp-skip-access-specifiers
  @@ -6,3 +6,3 @@ class RIGHT : public Baseclass
          void DoSomething();
  -       int ChangeMe;
  +       int IWasChanged;
   };

So it really does seem like libasan's regex engine is ignoring
REG_STARTEND. We should be able to work around it by compiling with
NO_REGEX, which would use our local regexec(). But to make matters even
more interesting, this isn't enough by itself.

Because ASan has support from the compiler, it doesn't seem to intercept
our call to regexec() at the dynamic library level. It actually
recognizes when we are compiling a call to regexec() and replaces it
with ASan-specific code at that point. And unlike most of our other
compat code, where we might have git_mmap() or similar, the actual
symbol name in the compiled compat/regex code is regexec(). So just
compiling with NO_REGEX isn't enough; we still end up in libasan!

We can work around that by having the preprocessor replace regexec with
git_regexec (both in the callers and in the actual implementation), and
we truly end up with a call to our custom regex code, even when
compiling with ASan. That's probably a good thing to do anyway, as it
means anybody looking at the symbols later (e.g., in a debugger) would
have a better indication of which function is which. So we'll do the
same for the other common regex functions (even though just regexec() is
enough to fix this ASan problem).

Signed-off-by: Jeff King <peff@peff.net>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
derrickstolee pushed a commit that referenced this pull request Jun 5, 2020
In write_commit_graph_file() we now have one block of code filling the
array of 'struct chunk_info' with the IDs and sizes of chunks to be
written, and an other block of code calling the functions responsible
for writing individual chunks.  In case of optional chunks like Extra
Edge List an Base Graphs List there is also a condition checking
whether that chunk is necessary/desired, and that same condition is
repeated in both blocks of code.  This patch series is about to add
more optional chunks, so there would be even more repeated conditions.

Eliminate these repeated conditions by storing the function pointers
responsible for writing individual chunks in the 'struct chunk_info'
array as well, and calling them in a loop to write the commit-graph
file.  This will open up the possibility for a bit of foolproofing in
the following patch.

Signed-off-by: SZEDER Gábor <szeder.dev@gmail.com>
derrickstolee pushed a commit that referenced this pull request Oct 8, 2020
The OFFSETOF_VAR(var, member) macro is implemented in terms of
offsetof(typeof(*var), member) with compilers that know typeof(),
but its fallback implemenation compares &(var->member) and (var) and
count the distance in bytes, i.e.

    ((uintptr_t)&(var)->member - (uintptr_t)(var))

MSVC's runtime check, when fed an uninitialized 'var', flags this as
a use of an uninitialized variable (and that is legit---uninitialized
contents of 'var' is subtracted) in a debug build.

After auditing all 6 uses of OFFSETOF_VAR(), 1 of them does feed a
potentially uninitialized 'var' to the macro in the beginning of the
for() loop:

    #define hashmap_for_each_entry(map, iter, var, member) \
            for (var = hashmap_iter_first_entry_offset(map, iter, \
                                                    OFFSETOF_VAR(var, member)); \
                    var; \
                    var = hashmap_iter_next_entry_offset(iter, \
                                                    OFFSETOF_VAR(var, member)))

We can work around this by making sure that var has _some_ value
when OFFSETOF_VAR() is called.  Strictly speaking, it invites
undefined behaviour to use NULL here if we end up with pointer
comparison, but MSVC runtime seems to be happy with it, and most
other systems have typeof() and don't even need pointer comparison
fallback code.

Signed-off-by: Junio C Hamano <gitster@pobox.com>
Signed-off-by: Johannes Schindelin <johannes.schindelin@gmx.de>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
derrickstolee pushed a commit that referenced this pull request Oct 8, 2020
Using the CMake support we added some time ago for real with Visual
Studio build revealed there were lot of usability improvements
possible, which have been carried out.

* js/cmake-vs:
  hashmap_for_each_entry(): workaround MSVC's runtime check failure #3
  cmake (Windows): recommend using Visual Studio's built-in CMake support
  cmake (Windows): initialize vcpkg/build dependencies automatically
  cmake (Windows): complain when encountering an unknown compiler
  cmake (Windows): let the `.dll` files be found when running the tests
  cmake: quote the path accurately when editing `test-lib.sh`
  cmake: fall back to using `vcpkg`'s `msgfmt.exe` on Windows
  cmake: ensure that the `vcpkg` packages are found on Windows
  cmake: do find Git for Windows' shell interpreter
  cmake: ignore files generated by CMake as run in Visual Studio
@dscho dscho deleted the contributing branch October 21, 2020 11:39
derrickstolee pushed a commit that referenced this pull request Dec 23, 2020
Test 5572.63 ("branch has no merge base with remote-tracking
counterpart") was introduced in 4d36f88 (submodule: do not pass null
OID to setup_revisions, 2018-05-24), as a regression test for the bug
this commit was fixing (preventing a 'fatal: bad object' error when the
current branch and the remote-tracking branch we are pulling have no
merge-base).

However, the commit message for 4d36f88 does not describe in which
real-life situation this bug was encountered. The brief discussion on the
mailing list [1] does not either.

The regression test is not really representative of a real-life
scenario: both the local repository and its upstream have only a single
commit, and the "no merge-base" scenario is simulated by recreating this
root commit in the local repository using 'git commit-tree' before
calling 'git pull --rebase --recurse-submodules'. The rebase succeeds
and results in the local branch being reset to the same root commit as
the upstream branch.

The fix in 4d36f88 modifies 'submodule.c::submodule_touches_in_range'
so that if 'excl_oid' is null, which is the case when the 'git merge-base
--fork-point' invocation in 'builtin/pull.c::get_rebase_fork_point'
errors (no fork-point), then instead of 'incl_oid --not excl_oid' being
passed to setup_revisions, only 'incl_oid' is passed, and
'submodule_touches_in_range' examines 'incl_oid' and all its ancestors
to verify that they do not touch the submodule.

In test 5572.63, the recreated lone root commit in the local repository is
thus the only commit being examined by 'submodule_touches_in_range', and
this commit *adds* the submodule. However, 'submodule_touches_in_range'
*succeeds* because 'combine-diff.c::diff_tree_combined' (see the
backtrace below) returns early since this commit is the root commit
and has no parents.

  #0  diff_tree_combined at combine-diff.c:1494
  #1  0x0000000100150cbe in diff_tree_combined_merge at combine-diff.c:1649
  #2  0x00000001002c7147 in collect_changed_submodules at submodule.c:869
  #3  0x00000001002c7d6f in submodule_touches_in_range at submodule.c:1268
  #4  0x00000001000ad58b in cmd_pull at builtin/pull.c:1040

In light of all this, add a note in t5572 documenting this peculiar
test.

[1] https://lore.kernel.org/git/20180524204729.19896-1-jonathantanmy@google.com/t/#u

Signed-off-by: Philippe Blain <levraiphilippeblain@gmail.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
derrickstolee added a commit that referenced this pull request Jan 4, 2021
The previous change reduced time spent in strlen() while comparing
consecutive paths in verify_cache(), but we can do better. The
conditional checks the existence of a directory separator at the correct
location, but only after doing a string comparison. Swap the order to be
logically equivalent but perform fewer string comparisons.

To test the effect on performance, I used a repository with over three
million paths in the index. I then ran the following command on repeat:

  git -c index.threads=1 commit --amend --allow-empty --no-edit

Here are the measurements over 10 runs after a 5-run warmup:

  Benchmark #1: v2.30.0
    Time (mean ± σ):     854.5 ms ±  18.2 ms
    Range (min … max):   825.0 ms … 892.8 ms

  Benchmark #2: Previous change
    Time (mean ± σ):     833.2 ms ±  10.3 ms
    Range (min … max):   815.8 ms … 849.7 ms

  Benchmark #3: This change
    Time (mean ± σ):     815.5 ms ±  18.1 ms
    Range (min … max):   795.4 ms … 849.5 ms

This change is 2% faster than the previous change and 5% faster than
v2.30.0.

Signed-off-by: Derrick Stolee <dstolee@microsoft.com>
derrickstolee added a commit that referenced this pull request Jan 4, 2021
The previous change reduced time spent in strlen() while comparing
consecutive paths in verify_cache(), but we can do better. The
conditional checks the existence of a directory separator at the correct
location, but only after doing a string comparison. Swap the order to be
logically equivalent but perform fewer string comparisons.

To test the effect on performance, I used a repository with over three
million paths in the index. I then ran the following command on repeat:

  git -c index.threads=1 commit --amend --allow-empty --no-edit

Here are the measurements over 10 runs after a 5-run warmup:

  Benchmark #1: v2.30.0
    Time (mean ± σ):     854.5 ms ±  18.2 ms
    Range (min … max):   825.0 ms … 892.8 ms

  Benchmark #2: Previous change
    Time (mean ± σ):     833.2 ms ±  10.3 ms
    Range (min … max):   815.8 ms … 849.7 ms

  Benchmark #3: This change
    Time (mean ± σ):     815.5 ms ±  18.1 ms
    Range (min … max):   795.4 ms … 849.5 ms

This change is 2% faster than the previous change and 5% faster than
v2.30.0.

Signed-off-by: Derrick Stolee <dstolee@microsoft.com>
derrickstolee added a commit that referenced this pull request Jan 7, 2021
The previous change reduced time spent in strlen() while comparing
consecutive paths in verify_cache(), but we can do better. The
conditional checks the existence of a directory separator at the correct
location, but only after doing a string comparison. Swap the order to be
logically equivalent but perform fewer string comparisons.

To test the effect on performance, I used a repository with over three
million paths in the index. I then ran the following command on repeat:

  git -c index.threads=1 commit --amend --allow-empty --no-edit

Here are the measurements over 10 runs after a 5-run warmup:

  Benchmark #1: v2.30.0
    Time (mean ± σ):     854.5 ms ±  18.2 ms
    Range (min … max):   825.0 ms … 892.8 ms

  Benchmark #2: Previous change
    Time (mean ± σ):     833.2 ms ±  10.3 ms
    Range (min … max):   815.8 ms … 849.7 ms

  Benchmark #3: This change
    Time (mean ± σ):     815.5 ms ±  18.1 ms
    Range (min … max):   795.4 ms … 849.5 ms

This change is 2% faster than the previous change and 5% faster than
v2.30.0.

Signed-off-by: Derrick Stolee <dstolee@microsoft.com>
derrickstolee added a commit that referenced this pull request Jan 20, 2021
The previous change reduced time spent in strlen() while comparing
consecutive paths in verify_cache(), but we can do better. The
conditional checks the existence of a directory separator at the correct
location, but only after doing a string comparison. Swap the order to be
logically equivalent but perform fewer string comparisons.

To test the effect on performance, I used a repository with over three
million paths in the index. I then ran the following command on repeat:

  git -c index.threads=1 commit --amend --allow-empty --no-edit

Here are the measurements over 10 runs after a 5-run warmup:

  Benchmark #1: v2.30.0
    Time (mean ± σ):     854.5 ms ±  18.2 ms
    Range (min … max):   825.0 ms … 892.8 ms

  Benchmark #2: Previous change
    Time (mean ± σ):     833.2 ms ±  10.3 ms
    Range (min … max):   815.8 ms … 849.7 ms

  Benchmark #3: This change
    Time (mean ± σ):     815.5 ms ±  18.1 ms
    Range (min … max):   795.4 ms … 849.5 ms

This change is 2% faster than the previous change and 5% faster than
v2.30.0.

Signed-off-by: Derrick Stolee <dstolee@microsoft.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
derrickstolee added a commit that referenced this pull request Jan 25, 2021
By testing 'git -c core.fsmonitor= status -uno', we can check for the
simplest index operations that can be made sparse-aware. The necessary
implementation details are already integrated with sparse-checkout, so
modify command_requires_full_index to be zero for cmd_status().

By running the debugger for 'git status -uno' after that change, we find
two instances of ensure_full_index() that were added for extra safety,
but can be removed without issue.

In refresh_index(), we loop through the index entries. The
refresh_cache_ent() method copies the sparse directories into the
refreshed index without issue.

The loop within run_diff_files() skips things that are in stage 0 and
have skip-worktree enabled, so seems safe to disable ensure_full_index()
here.

TODO: performance numbers at this point are confusing:

Benchmark #1: full index (git -c core.fsmonitor= status -uno)
  Time (mean ± σ):      2.522 s ±  0.079 s    [User: 1.511 s, System: 0.833 s]
  Range (min … max):    2.454 s …  2.715 s    10 runs

Benchmark #2: sparse index, old (git -c core.fsmonitor= status -uno)
  Time (mean ± σ):      3.370 s ±  0.036 s    [User: 3.166 s, System: 0.294 s]
  Range (min … max):    3.318 s …  3.428 s    10 runs

Benchmark #3: sparse index (git -c core.fsmonitor= status -uno)
  Time (mean ± σ):      5.196 s ±  0.056 s    [User: 5.189 s, System: 0.185 s]
  Range (min … max):    5.138 s …  5.269 s    10 runs

This shows that the previous change (Benchmark #2) had some overhead with
ensure_full_index() compared to a full index (Benchmark #1) but the
current change got much slower for some reason! Note that
ensure_full_index() is not called anywhere in this process! What is
going on?

Signed-off-by: Derrick Stolee <dstolee@microsoft.com>
derrickstolee added a commit that referenced this pull request Jan 25, 2021
By testing 'git -c core.fsmonitor= status -uno', we can check for the
simplest index operations that can be made sparse-aware. The necessary
implementation details are already integrated with sparse-checkout, so
modify command_requires_full_index to be zero for cmd_status().

By running the debugger for 'git status -uno' after that change, we find
two instances of ensure_full_index() that were added for extra safety,
but can be removed without issue.

In refresh_index(), we loop through the index entries. The
refresh_cache_ent() method copies the sparse directories into the
refreshed index without issue.

The loop within run_diff_files() skips things that are in stage 0 and
have skip-worktree enabled, so seems safe to disable ensure_full_index()
here.

TODO: performance numbers at this point are confusing:

Benchmark #1: full index (git -c core.fsmonitor= status -uno)
  Time (mean ± σ):      2.522 s ±  0.079 s    [User: 1.511 s, System: 0.833 s]
  Range (min … max):    2.454 s …  2.715 s    10 runs

Benchmark #2: sparse index, old (git -c core.fsmonitor= status -uno)
  Time (mean ± σ):      3.370 s ±  0.036 s    [User: 3.166 s, System: 0.294 s]
  Range (min … max):    3.318 s …  3.428 s    10 runs

Benchmark #3: sparse index (git -c core.fsmonitor= status -uno)
  Time (mean ± σ):      5.196 s ±  0.056 s    [User: 5.189 s, System: 0.185 s]
  Range (min … max):    5.138 s …  5.269 s    10 runs

This shows that the previous change (Benchmark #2) had some overhead with
ensure_full_index() compared to a full index (Benchmark #1) but the
current change got much slower for some reason! Note that
ensure_full_index() is not called anywhere in this process! What is
going on?

Signed-off-by: Derrick Stolee <dstolee@microsoft.com>
derrickstolee added a commit that referenced this pull request Jan 25, 2021
The cache-tree extension was previously disabled with sparse indexes.
However, the cache-tree is an important performance feature for commands
like 'git status' and 'git add'. Integrate it with sparse directory
entries.

When writing a sparse index, completely clear and recalculate the cache
tree. By starting from scratch, the only integration necessary is to
check if we hit a sparse directory entry and create a leaf of the
cache-tree that has an entry_count of one and no subtrees.

Once the cache-tree exists within a sparse index, we finally get
improved performance. I test the sparse index performance using a
private monorepo with over 2.1 million files at HEAD, but with a
sparse-checkout definition that has only 68,000 paths in the populated
cone. The sparse index has about 2,000 sparse directory entries. I
compare three scenarios:

 1. Use the full index. The index size is ~186 MB.
 2. Use the sparse index. The index size is ~5.5 MB.
 3. Use a commit where HEAD matches the populated set. The full index
    size is ~5.3MB.

The third benchmark is included as a theoretical optimium for a
repository of the same object database.

First, a clean 'git status' improves from 3.1s to 240ms.

Benchmark #1: full index (git status)
  Time (mean ± σ):      3.167 s ±  0.036 s    [User: 2.006 s, System: 1.078 s]
  Range (min … max):    3.100 s …  3.208 s    10 runs

Benchmark #2: sparse index (git status)
  Time (mean ± σ):     239.5 ms ±   8.1 ms    [User: 189.4 ms, System: 226.8 ms]
  Range (min … max):   226.0 ms … 251.9 ms    13 runs

Benchmark #3: small tree (git status)
  Time (mean ± σ):     195.3 ms ±   4.5 ms    [User: 116.5 ms, System: 84.4 ms]
  Range (min … max):   188.8 ms … 202.8 ms    15 runs

The optimimum is still 45ms faster. This is due in part to the 2,000+
sparse directory entries, but there might be other optimizations to make
in the sparse-index case. In particular, I find that this performance
difference disappears when I disable FS Monitor, which is somewhat
disabled in the sparse-index case, but might still be adding overhead.

The performance numbers for 'git add .' are much closer to optimal:

Benchmark #1: full index (git add .)
  Time (mean ± σ):      3.076 s ±  0.022 s    [User: 2.065 s, System: 0.943 s]
  Range (min … max):    3.044 s …  3.116 s    10 runs

Benchmark #2: sparse index (git add .)
  Time (mean ± σ):     218.0 ms ±   6.6 ms    [User: 195.7 ms, System: 206.6 ms]
  Range (min … max):   209.8 ms … 228.2 ms    13 runs

Benchmark #3: small tree (git add .)
  Time (mean ± σ):     217.6 ms ±   5.4 ms    [User: 131.9 ms, System: 86.7 ms]
  Range (min … max):   212.1 ms … 228.4 ms    14 runs

In this test, I also used "echo >>README.md" to append a line to the
README.md file, so the 'git add .' command is doing _something_ other
than a no-op. Without this edit (and FS Monitor enabled) the small
tree case again gains about 30ms on the sparse index case.

Signed-off-by: Derrick Stolee <dstolee@microsoft.com>
derrickstolee added a commit that referenced this pull request Jan 25, 2021
The cache-tree extension was previously disabled with sparse indexes.
However, the cache-tree is an important performance feature for commands
like 'git status' and 'git add'. Integrate it with sparse directory
entries.

When writing a sparse index, completely clear and recalculate the cache
tree. By starting from scratch, the only integration necessary is to
check if we hit a sparse directory entry and create a leaf of the
cache-tree that has an entry_count of one and no subtrees.

Once the cache-tree exists within a sparse index, we finally get
improved performance. I test the sparse index performance using a
private monorepo with over 2.1 million files at HEAD, but with a
sparse-checkout definition that has only 68,000 paths in the populated
cone. The sparse index has about 2,000 sparse directory entries. I
compare three scenarios:

 1. Use the full index. The index size is ~186 MB.
 2. Use the sparse index. The index size is ~5.5 MB.
 3. Use a commit where HEAD matches the populated set. The full index
    size is ~5.3MB.

The third benchmark is included as a theoretical optimium for a
repository of the same object database.

First, a clean 'git status' improves from 3.1s to 240ms.

Benchmark #1: full index (git status)
  Time (mean ± σ):      3.167 s ±  0.036 s    [User: 2.006 s, System: 1.078 s]
  Range (min … max):    3.100 s …  3.208 s    10 runs

Benchmark #2: sparse index (git status)
  Time (mean ± σ):     239.5 ms ±   8.1 ms    [User: 189.4 ms, System: 226.8 ms]
  Range (min … max):   226.0 ms … 251.9 ms    13 runs

Benchmark #3: small tree (git status)
  Time (mean ± σ):     195.3 ms ±   4.5 ms    [User: 116.5 ms, System: 84.4 ms]
  Range (min … max):   188.8 ms … 202.8 ms    15 runs

The optimimum is still 45ms faster. This is due in part to the 2,000+
sparse directory entries, but there might be other optimizations to make
in the sparse-index case. In particular, I find that this performance
difference disappears when I disable FS Monitor, which is somewhat
disabled in the sparse-index case, but might still be adding overhead.

The performance numbers for 'git add .' are much closer to optimal:

Benchmark #1: full index (git add .)
  Time (mean ± σ):      3.076 s ±  0.022 s    [User: 2.065 s, System: 0.943 s]
  Range (min … max):    3.044 s …  3.116 s    10 runs

Benchmark #2: sparse index (git add .)
  Time (mean ± σ):     218.0 ms ±   6.6 ms    [User: 195.7 ms, System: 206.6 ms]
  Range (min … max):   209.8 ms … 228.2 ms    13 runs

Benchmark #3: small tree (git add .)
  Time (mean ± σ):     217.6 ms ±   5.4 ms    [User: 131.9 ms, System: 86.7 ms]
  Range (min … max):   212.1 ms … 228.4 ms    14 runs

In this test, I also used "echo >>README.md" to append a line to the
README.md file, so the 'git add .' command is doing _something_ other
than a no-op. Without this edit (and FS Monitor enabled) the small
tree case again gains about 30ms on the sparse index case.

Signed-off-by: Derrick Stolee <dstolee@microsoft.com>
derrickstolee added a commit that referenced this pull request Jan 25, 2021
The cache-tree extension was previously disabled with sparse indexes.
However, the cache-tree is an important performance feature for commands
like 'git status' and 'git add'. Integrate it with sparse directory
entries.

When writing a sparse index, completely clear and recalculate the cache
tree. By starting from scratch, the only integration necessary is to
check if we hit a sparse directory entry and create a leaf of the
cache-tree that has an entry_count of one and no subtrees.

Once the cache-tree exists within a sparse index, we finally get
improved performance. I test the sparse index performance using a
private monorepo with over 2.1 million files at HEAD, but with a
sparse-checkout definition that has only 68,000 paths in the populated
cone. The sparse index has about 2,000 sparse directory entries. I
compare three scenarios:

 1. Use the full index. The index size is ~186 MB.
 2. Use the sparse index. The index size is ~5.5 MB.
 3. Use a commit where HEAD matches the populated set. The full index
    size is ~5.3MB.

The third benchmark is included as a theoretical optimium for a
repository of the same object database.

First, a clean 'git status' improves from 3.1s to 240ms.

Benchmark #1: full index (git status)
  Time (mean ± σ):      3.167 s ±  0.036 s    [User: 2.006 s, System: 1.078 s]
  Range (min … max):    3.100 s …  3.208 s    10 runs

Benchmark #2: sparse index (git status)
  Time (mean ± σ):     239.5 ms ±   8.1 ms    [User: 189.4 ms, System: 226.8 ms]
  Range (min … max):   226.0 ms … 251.9 ms    13 runs

Benchmark #3: small tree (git status)
  Time (mean ± σ):     195.3 ms ±   4.5 ms    [User: 116.5 ms, System: 84.4 ms]
  Range (min … max):   188.8 ms … 202.8 ms    15 runs

The optimimum is still 45ms faster. This is due in part to the 2,000+
sparse directory entries, but there might be other optimizations to make
in the sparse-index case. In particular, I find that this performance
difference disappears when I disable FS Monitor, which is somewhat
disabled in the sparse-index case, but might still be adding overhead.

The performance numbers for 'git add .' are much closer to optimal:

Benchmark #1: full index (git add .)
  Time (mean ± σ):      3.076 s ±  0.022 s    [User: 2.065 s, System: 0.943 s]
  Range (min … max):    3.044 s …  3.116 s    10 runs

Benchmark #2: sparse index (git add .)
  Time (mean ± σ):     218.0 ms ±   6.6 ms    [User: 195.7 ms, System: 206.6 ms]
  Range (min … max):   209.8 ms … 228.2 ms    13 runs

Benchmark #3: small tree (git add .)
  Time (mean ± σ):     217.6 ms ±   5.4 ms    [User: 131.9 ms, System: 86.7 ms]
  Range (min … max):   212.1 ms … 228.4 ms    14 runs

In this test, I also used "echo >>README.md" to append a line to the
README.md file, so the 'git add .' command is doing _something_ other
than a no-op. Without this edit (and FS Monitor enabled) the small
tree case again gains about 30ms on the sparse index case.

Signed-off-by: Derrick Stolee <dstolee@microsoft.com>
derrickstolee added a commit that referenced this pull request Jan 25, 2021
The cache-tree extension was previously disabled with sparse indexes.
However, the cache-tree is an important performance feature for commands
like 'git status' and 'git add'. Integrate it with sparse directory
entries.

When writing a sparse index, completely clear and recalculate the cache
tree. By starting from scratch, the only integration necessary is to
check if we hit a sparse directory entry and create a leaf of the
cache-tree that has an entry_count of one and no subtrees.

Once the cache-tree exists within a sparse index, we finally get
improved performance. I test the sparse index performance using a
private monorepo with over 2.1 million files at HEAD, but with a
sparse-checkout definition that has only 68,000 paths in the populated
cone. The sparse index has about 2,000 sparse directory entries. I
compare three scenarios:

 1. Use the full index. The index size is ~186 MB.
 2. Use the sparse index. The index size is ~5.5 MB.
 3. Use a commit where HEAD matches the populated set. The full index
    size is ~5.3MB.

The third benchmark is included as a theoretical optimium for a
repository of the same object database.

First, a clean 'git status' improves from 3.1s to 240ms.

Benchmark #1: full index (git status)
  Time (mean ± σ):      3.167 s ±  0.036 s    [User: 2.006 s, System: 1.078 s]
  Range (min … max):    3.100 s …  3.208 s    10 runs

Benchmark #2: sparse index (git status)
  Time (mean ± σ):     239.5 ms ±   8.1 ms    [User: 189.4 ms, System: 226.8 ms]
  Range (min … max):   226.0 ms … 251.9 ms    13 runs

Benchmark #3: small tree (git status)
  Time (mean ± σ):     195.3 ms ±   4.5 ms    [User: 116.5 ms, System: 84.4 ms]
  Range (min … max):   188.8 ms … 202.8 ms    15 runs

The optimimum is still 45ms faster. This is due in part to the 2,000+
sparse directory entries, but there might be other optimizations to make
in the sparse-index case. In particular, I find that this performance
difference disappears when I disable FS Monitor, which is somewhat
disabled in the sparse-index case, but might still be adding overhead.

The performance numbers for 'git add .' are much closer to optimal:

Benchmark #1: full index (git add .)
  Time (mean ± σ):      3.076 s ±  0.022 s    [User: 2.065 s, System: 0.943 s]
  Range (min … max):    3.044 s …  3.116 s    10 runs

Benchmark #2: sparse index (git add .)
  Time (mean ± σ):     218.0 ms ±   6.6 ms    [User: 195.7 ms, System: 206.6 ms]
  Range (min … max):   209.8 ms … 228.2 ms    13 runs

Benchmark #3: small tree (git add .)
  Time (mean ± σ):     217.6 ms ±   5.4 ms    [User: 131.9 ms, System: 86.7 ms]
  Range (min … max):   212.1 ms … 228.4 ms    14 runs

In this test, I also used "echo >>README.md" to append a line to the
README.md file, so the 'git add .' command is doing _something_ other
than a no-op. Without this edit (and FS Monitor enabled) the small
tree case again gains about 30ms on the sparse index case.

Signed-off-by: Derrick Stolee <dstolee@microsoft.com>
derrickstolee added a commit that referenced this pull request Jan 25, 2021
The cache-tree extension was previously disabled with sparse indexes.
However, the cache-tree is an important performance feature for commands
like 'git status' and 'git add'. Integrate it with sparse directory
entries.

When writing a sparse index, completely clear and recalculate the cache
tree. By starting from scratch, the only integration necessary is to
check if we hit a sparse directory entry and create a leaf of the
cache-tree that has an entry_count of one and no subtrees.

Once the cache-tree exists within a sparse index, we finally get
improved performance. I test the sparse index performance using a
private monorepo with over 2.1 million files at HEAD, but with a
sparse-checkout definition that has only 68,000 paths in the populated
cone. The sparse index has about 2,000 sparse directory entries. I
compare three scenarios:

 1. Use the full index. The index size is ~186 MB.
 2. Use the sparse index. The index size is ~5.5 MB.
 3. Use a commit where HEAD matches the populated set. The full index
    size is ~5.3MB.

The third benchmark is included as a theoretical optimium for a
repository of the same object database.

First, a clean 'git status' improves from 3.1s to 240ms.

Benchmark #1: full index (git status)
  Time (mean ± σ):      3.167 s ±  0.036 s    [User: 2.006 s, System: 1.078 s]
  Range (min … max):    3.100 s …  3.208 s    10 runs

Benchmark #2: sparse index (git status)
  Time (mean ± σ):     239.5 ms ±   8.1 ms    [User: 189.4 ms, System: 226.8 ms]
  Range (min … max):   226.0 ms … 251.9 ms    13 runs

Benchmark #3: small tree (git status)
  Time (mean ± σ):     195.3 ms ±   4.5 ms    [User: 116.5 ms, System: 84.4 ms]
  Range (min … max):   188.8 ms … 202.8 ms    15 runs

The optimimum is still 45ms faster. This is due in part to the 2,000+
sparse directory entries, but there might be other optimizations to make
in the sparse-index case. In particular, I find that this performance
difference disappears when I disable FS Monitor, which is somewhat
disabled in the sparse-index case, but might still be adding overhead.

The performance numbers for 'git add .' are much closer to optimal:

Benchmark #1: full index (git add .)
  Time (mean ± σ):      3.076 s ±  0.022 s    [User: 2.065 s, System: 0.943 s]
  Range (min … max):    3.044 s …  3.116 s    10 runs

Benchmark #2: sparse index (git add .)
  Time (mean ± σ):     218.0 ms ±   6.6 ms    [User: 195.7 ms, System: 206.6 ms]
  Range (min … max):   209.8 ms … 228.2 ms    13 runs

Benchmark #3: small tree (git add .)
  Time (mean ± σ):     217.6 ms ±   5.4 ms    [User: 131.9 ms, System: 86.7 ms]
  Range (min … max):   212.1 ms … 228.4 ms    14 runs

In this test, I also used "echo >>README.md" to append a line to the
README.md file, so the 'git add .' command is doing _something_ other
than a no-op. Without this edit (and FS Monitor enabled) the small
tree case again gains about 30ms on the sparse index case.

Signed-off-by: Derrick Stolee <dstolee@microsoft.com>
derrickstolee added a commit that referenced this pull request Jan 25, 2021
The cache-tree extension was previously disabled with sparse indexes.
However, the cache-tree is an important performance feature for commands
like 'git status' and 'git add'. Integrate it with sparse directory
entries.

When writing a sparse index, completely clear and recalculate the cache
tree. By starting from scratch, the only integration necessary is to
check if we hit a sparse directory entry and create a leaf of the
cache-tree that has an entry_count of one and no subtrees.

Once the cache-tree exists within a sparse index, we finally get
improved performance. I test the sparse index performance using a
private monorepo with over 2.1 million files at HEAD, but with a
sparse-checkout definition that has only 68,000 paths in the populated
cone. The sparse index has about 2,000 sparse directory entries. I
compare three scenarios:

 1. Use the full index. The index size is ~186 MB.
 2. Use the sparse index. The index size is ~5.5 MB.
 3. Use a commit where HEAD matches the populated set. The full index
    size is ~5.3MB.

The third benchmark is included as a theoretical optimium for a
repository of the same object database.

First, a clean 'git status' improves from 3.1s to 240ms.

Benchmark #1: full index (git status)
  Time (mean ± σ):      3.167 s ±  0.036 s    [User: 2.006 s, System: 1.078 s]
  Range (min … max):    3.100 s …  3.208 s    10 runs

Benchmark #2: sparse index (git status)
  Time (mean ± σ):     239.5 ms ±   8.1 ms    [User: 189.4 ms, System: 226.8 ms]
  Range (min … max):   226.0 ms … 251.9 ms    13 runs

Benchmark #3: small tree (git status)
  Time (mean ± σ):     195.3 ms ±   4.5 ms    [User: 116.5 ms, System: 84.4 ms]
  Range (min … max):   188.8 ms … 202.8 ms    15 runs

The optimimum is still 45ms faster. This is due in part to the 2,000+
sparse directory entries, but there might be other optimizations to make
in the sparse-index case. In particular, I find that this performance
difference disappears when I disable FS Monitor, which is somewhat
disabled in the sparse-index case, but might still be adding overhead.

The performance numbers for 'git add .' are much closer to optimal:

Benchmark #1: full index (git add .)
  Time (mean ± σ):      3.076 s ±  0.022 s    [User: 2.065 s, System: 0.943 s]
  Range (min … max):    3.044 s …  3.116 s    10 runs

Benchmark #2: sparse index (git add .)
  Time (mean ± σ):     218.0 ms ±   6.6 ms    [User: 195.7 ms, System: 206.6 ms]
  Range (min … max):   209.8 ms … 228.2 ms    13 runs

Benchmark #3: small tree (git add .)
  Time (mean ± σ):     217.6 ms ±   5.4 ms    [User: 131.9 ms, System: 86.7 ms]
  Range (min … max):   212.1 ms … 228.4 ms    14 runs

In this test, I also used "echo >>README.md" to append a line to the
README.md file, so the 'git add .' command is doing _something_ other
than a no-op. Without this edit (and FS Monitor enabled) the small
tree case again gains about 30ms on the sparse index case.

Signed-off-by: Derrick Stolee <dstolee@microsoft.com>
derrickstolee pushed a commit that referenced this pull request Feb 17, 2021
This is modelled on the version of handle_directory_level_conflicts()
from merge-recursive.c, but is massively simplified due to the following
factors:
  * strmap API provides simplifications over using direct hashmap
  * we have a dirs_removed field in struct rename_info that we have an
    easy way to populate from collect_merge_info(); this was already
    used in compute_rename_counts() and thus we do not need to check
    for condition #2.
  * The removal of condition #2 by handling it earlier in the code also
    obviates the need to check for condition #3 -- if both sides renamed
    a directory, meaning that the directory no longer exists on either
    side, then neither side could have added any new files to that
    directory, and thus there are no files whose locations we need to
    move due to such a directory rename.

In fact, the same logic that makes condition #3 irrelevant means
condition #1 is also irrelevant so we could drop this function.
However, it is cheap to check if both sides rename the same directory,
and doing so can save future computation.  So, simply remove any
directories that both sides renamed from the list of directory renames.

Signed-off-by: Elijah Newren <newren@gmail.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
derrickstolee pushed a commit that referenced this pull request Feb 17, 2021
Add some timing instrumentation for both merge-ort and diffcore-rename;
I used these to measure and optimize performance in both, and several
future patch series will build on these to reduce the timings of some
select testcases.

=== Setup ===

The primary testcase I used involved rebasing a random topic in the
linux kernel (consisting of 35 patches) against an older version.  I
added two variants, one where I rename a toplevel directory, and another
where I only rebase one patch instead of the whole topic.  The setup is
as follows:

  $ git clone git://git.kernel.org/pub/scm/linux/kernel/git/stable/linux-stable.git
  $ git branch hwmon-updates fd8bdb23b91876ac1e624337bb88dc1dcc21d67e
  $ git branch hwmon-just-one fd8bdb23b91876ac1e624337bb88dc1dcc21d67e~34
  $ git branch base 4703d9119972bf586d2cca76ec6438f819ffa30e
  $ git switch -c 5.4-renames v5.4
  $ git mv drivers pilots  # Introduce over 26,000 renames
  $ git commit -m "Rename drivers/ to pilots/"
  $ git config merge.renameLimit 30000
  $ git config merge.directoryRenames true

=== Testcases ===

Now with REBASE standing for either "git rebase [--merge]" (using
merge-recursive) or "test-tool fast-rebase" (using merge-ort), the
testcases are:

Testcase #1: no-renames

  $ git checkout v5.4^0
  $ REBASE --onto HEAD base hwmon-updates

  Note: technically the name is misleading; there are some renames, but
  very few.  Rename detection only takes about half the overall time.

Testcase #2: mega-renames

  $ git checkout 5.4-renames^0
  $ REBASE --onto HEAD base hwmon-updates

Testcase #3: just-one-mega

  $ git checkout 5.4-renames^0
  $ REBASE --onto HEAD base hwmon-just-one

=== Timing results ===

Overall timings, using hyperfine (1 warmup run, 3 runs for mega-renames,
10 runs for the other two cases):

                       merge-recursive           merge-ort
    no-renames:       18.912 s ±  0.174 s    14.263 s ±  0.053 s
    mega-renames:   5964.031 s ± 10.459 s  5504.231 s ±  5.150 s
    just-one-mega:   149.583 s ±  0.751 s   158.534 s ±  0.498 s

A single re-run of each with some breakdowns:

                                    ---  no-renames  ---
                              merge-recursive   merge-ort
    overall runtime:              19.302 s        14.257 s
    inexact rename detection:      7.603 s         7.906 s
    everything else:              11.699 s         6.351 s

                                    --- mega-renames ---
                              merge-recursive   merge-ort
    overall runtime:            5950.195 s      5499.672 s
    inexact rename detection:   5746.309 s      5487.120 s
    everything else:             203.886 s        17.552 s

                                    --- just-one-mega ---
                              merge-recursive   merge-ort
    overall runtime:             151.001 s       158.582 s
    inexact rename detection:    143.448 s       157.835 s
    everything else:               7.553 s         0.747 s

=== Timing observations ===

0) Maximum speedup

The "everything else" row represents the maximum speedup we could
achieve if we were to somehow infinitely parallelize inexact rename
detection, but leave everything else alone.  The fact that this is so
much smaller than the real runtime (even in the case with virtually no
renames) makes it clear just how overwhelmingly large the time spent on
rename detection can be.

1) no-renames

1a) merge-ort is faster than merge-recursive, which is nice.  However,
this still should not be considered good enough.  Although the "merge"
backend to rebase (merge-recursive) is sometimes faster than the "apply"
backend, this is one of those cases where it is not.  In fact, even
merge-ort is slower.  The "apply" backend can complete this testcase in
    6.940 s ± 0.485 s
which is about 2x faster than merge-ort and 3x faster than
merge-recursive.  One goal of the merge-ort performance work will be to
make it faster than git-am on this (and similar) testcases.

2) mega-renames

2a) Obviously rename detection is a huge cost; it's where most the time
is spent.  We need to cut that down.  If we could somehow infinitely
parallelize it and drive its time to 0, the merge-recursive time would
drop to about 204s, and the merge-ort time would drop to about 17s.  I
think this particular stat shows I've subtly baked a couple performance
improvements into merge-ort and into fast-rebase already.

3) just-one-mega

3a) not much to say here, it just gives some flavor for how rebasing
only one patch compares to rebasing 35.

=== Goals ===

This patch is obviously just the beginning.  Here are some of my goals
that this measurement will help us achieve:

* Drive the cost of rename detection down considerably for merges
* After the above has been achieved, see if there are other slowness
  factors (which would have previously been overshadowed by rename
  detection costs) which we can then focus on and also optimize.
* Ensure our rebase testcase that requires little rename detection
  is noticeably faster with merge-ort than with apply-based rebase.

Signed-off-by: Elijah Newren <newren@gmail.com>
Acked-by: Taylor Blau <ttaylorr@github.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
derrickstolee added a commit that referenced this pull request Feb 17, 2021
The cache-tree extension was previously disabled with sparse indexes.
However, the cache-tree is an important performance feature for commands
like 'git status' and 'git add'. Integrate it with sparse directory
entries.

When writing a sparse index, completely clear and recalculate the cache
tree. By starting from scratch, the only integration necessary is to
check if we hit a sparse directory entry and create a leaf of the
cache-tree that has an entry_count of one and no subtrees.

Once the cache-tree exists within a sparse index, we finally get
improved performance. I test the sparse index performance using a
private monorepo with over 2.1 million files at HEAD, but with a
sparse-checkout definition that has only 68,000 paths in the populated
cone. The sparse index has about 2,000 sparse directory entries. I
compare three scenarios:

 1. Use the full index. The index size is ~186 MB.
 2. Use the sparse index. The index size is ~5.5 MB.
 3. Use a commit where HEAD matches the populated set. The full index
    size is ~5.3MB.

The third benchmark is included as a theoretical optimium for a
repository of the same object database.

First, a clean 'git status' improves from 3.1s to 240ms.

Benchmark #1: full index (git status)
  Time (mean ± σ):      3.167 s ±  0.036 s    [User: 2.006 s, System: 1.078 s]
  Range (min … max):    3.100 s …  3.208 s    10 runs

Benchmark #2: sparse index (git status)
  Time (mean ± σ):     239.5 ms ±   8.1 ms    [User: 189.4 ms, System: 226.8 ms]
  Range (min … max):   226.0 ms … 251.9 ms    13 runs

Benchmark #3: small tree (git status)
  Time (mean ± σ):     195.3 ms ±   4.5 ms    [User: 116.5 ms, System: 84.4 ms]
  Range (min … max):   188.8 ms … 202.8 ms    15 runs

The optimimum is still 45ms faster. This is due in part to the 2,000+
sparse directory entries, but there might be other optimizations to make
in the sparse-index case. In particular, I find that this performance
difference disappears when I disable FS Monitor, which is somewhat
disabled in the sparse-index case, but might still be adding overhead.

The performance numbers for 'git add .' are much closer to optimal:

Benchmark #1: full index (git add .)
  Time (mean ± σ):      3.076 s ±  0.022 s    [User: 2.065 s, System: 0.943 s]
  Range (min … max):    3.044 s …  3.116 s    10 runs

Benchmark #2: sparse index (git add .)
  Time (mean ± σ):     218.0 ms ±   6.6 ms    [User: 195.7 ms, System: 206.6 ms]
  Range (min … max):   209.8 ms … 228.2 ms    13 runs

Benchmark #3: small tree (git add .)
  Time (mean ± σ):     217.6 ms ±   5.4 ms    [User: 131.9 ms, System: 86.7 ms]
  Range (min … max):   212.1 ms … 228.4 ms    14 runs

In this test, I also used "echo >>README.md" to append a line to the
README.md file, so the 'git add .' command is doing _something_ other
than a no-op. Without this edit (and FS Monitor enabled) the small
tree case again gains about 30ms on the sparse index case.

Signed-off-by: Derrick Stolee <dstolee@microsoft.com>
derrickstolee pushed a commit that referenced this pull request Mar 24, 2021
…sponse

query_result can be be an empty strbuf (STRBUF_INIT) - in that case
trying to read 3 bytes triggers a buffer overflow read (as
query_result.buf = '\0').

Therefore we need to check query_result's length before trying to read 3
bytes.

This overflow was introduced in:
  940b94f (fsmonitor: log invocation of FSMonitor hook to trace2, 2021-02-03)
It was found when running the test-suite against ASAN, and can be most
easily reproduced with the following command:

make GIT_TEST_OPTS="-v" DEFAULT_TEST_TARGET="t7519-status-fsmonitor.sh" \
SANITIZE=address DEVELOPER=1 test

==2235==ERROR: AddressSanitizer: global-buffer-overflow on address 0x0000019e6e5e at pc 0x00000043745c bp 0x7fffd382c520 sp 0x7fffd382bcc8
READ of size 3 at 0x0000019e6e5e thread T0
    #0 0x43745b in MemcmpInterceptorCommon(void*, int (*)(void const*, void const*, unsigned long), void const*, void const*, unsigned long) /home/abuild/rpmbuild/BUILD/llvm-11.0.0.src/build/../projects/compiler-rt/lib/asan/../sanitizer_common/sanitizer_common_interceptors.inc:842:7
    #1 0x43786d in bcmp /home/abuild/rpmbuild/BUILD/llvm-11.0.0.src/build/../projects/compiler-rt/lib/asan/../sanitizer_common/sanitizer_common_interceptors.inc:887:10
    #2 0x80b146 in fsmonitor_is_trivial_response /home/ahunt/oss-fuzz/git/fsmonitor.c:192:10
    #3 0x80b146 in query_fsmonitor /home/ahunt/oss-fuzz/git/fsmonitor.c:175:7
    #4 0x80a749 in refresh_fsmonitor /home/ahunt/oss-fuzz/git/fsmonitor.c:267:21
    #5 0x80bad1 in tweak_fsmonitor /home/ahunt/oss-fuzz/git/fsmonitor.c:429:4
    #6 0x90f040 in read_index_from /home/ahunt/oss-fuzz/git/read-cache.c:2321:3
    #7 0x8e5d08 in repo_read_index_preload /home/ahunt/oss-fuzz/git/preload-index.c:164:15
    #8 0x52dd45 in prepare_index /home/ahunt/oss-fuzz/git/builtin/commit.c:363:6
    #9 0x52a188 in cmd_commit /home/ahunt/oss-fuzz/git/builtin/commit.c:1588:15
    #10 0x4ce77e in run_builtin /home/ahunt/oss-fuzz/git/git.c:453:11
    #11 0x4ccb18 in handle_builtin /home/ahunt/oss-fuzz/git/git.c:704:3
    #12 0x4cb01c in run_argv /home/ahunt/oss-fuzz/git/git.c:771:4
    #13 0x4cb01c in cmd_main /home/ahunt/oss-fuzz/git/git.c:902:19
    #14 0x6aca8d in main /home/ahunt/oss-fuzz/git/common-main.c:52:11
    #15 0x7fb027bf5349 in __libc_start_main (/lib64/libc.so.6+0x24349)
    #16 0x4206b9 in _start /home/abuild/rpmbuild/BUILD/glibc-2.26/csu/../sysdeps/x86_64/start.S:120

0x0000019e6e5e is located 2 bytes to the left of global variable 'strbuf_slopbuf' defined in 'strbuf.c:51:6' (0x19e6e60) of size 1
  'strbuf_slopbuf' is ascii string ''
0x0000019e6e5e is located 126 bytes to the right of global variable 'signals' defined in 'sigchain.c:11:31' (0x19e6be0) of size 512
SUMMARY: AddressSanitizer: global-buffer-overflow /home/abuild/rpmbuild/BUILD/llvm-11.0.0.src/build/../projects/compiler-rt/lib/asan/../sanitizer_common/sanitizer_common_interceptors.inc:842:7 in MemcmpInterceptorCommon(void*, int (*)(void const*, void const*, unsigned long), void const*, void const*, unsigned long)
Shadow bytes around the buggy address:
  0x000080334d70: f9 f9 f9 f9 00 f9 f9 f9 f9 f9 f9 f9 00 00 00 00
  0x000080334d80: 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00
  0x000080334d90: 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00
  0x000080334da0: 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00
  0x000080334db0: 00 00 00 00 00 00 00 00 00 00 00 00 f9 f9 f9 f9
=>0x000080334dc0: f9 f9 f9 f9 f9 f9 f9 f9 f9 f9 f9[f9]01 f9 f9 f9
  0x000080334dd0: f9 f9 f9 f9 03 f9 f9 f9 f9 f9 f9 f9 02 f9 f9 f9
  0x000080334de0: f9 f9 f9 f9 00 f9 f9 f9 f9 f9 f9 f9 04 f9 f9 f9
  0x000080334df0: f9 f9 f9 f9 01 f9 f9 f9 f9 f9 f9 f9 00 00 00 00
  0x000080334e00: f9 f9 f9 f9 00 00 00 00 f9 f9 f9 f9 01 f9 f9 f9
  0x000080334e10: f9 f9 f9 f9 04 f9 f9 f9 f9 f9 f9 f9 00 f9 f9 f9
Shadow byte legend (one shadow byte represents 8 application bytes):
  Addressable:           00
  Partially addressable: 01 02 03 04 05 06 07
  Heap left redzone:       fa
  Freed heap region:       fd
  Stack left redzone:      f1
  Stack mid redzone:       f2
  Stack right redzone:     f3
  Stack after return:      f5
  Stack use after scope:   f8
  Global redzone:          f9
  Global init order:       f6
  Poisoned by user:        f7
  Container overflow:      fc
  Array cookie:            ac
  Intra object redzone:    bb
  ASan internal:           fe
  Left alloca redzone:     ca
  Right alloca redzone:    cb
  Shadow gap:              cc

Signed-off-by: Andrzej Hunt <ajrhunt@google.com>
Acked-by: Jeff Hostetler <jeffhost@microsoft.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
derrickstolee pushed a commit that referenced this pull request Apr 10, 2021
shorten_unambiguous_ref() returns an allocated string. We have to
track it separately from the const refname.

This leak has existed since:
9ab55da (git symbolic-ref --delete $symref, 2012-10-21)

This leak was found when running t0001 with LSAN, see also LSAN output
below:

Direct leak of 19 byte(s) in 1 object(s) allocated from:
    #0 0x486514 in strdup /home/abuild/rpmbuild/BUILD/llvm-11.0.0.src/build/../projects/compiler-rt/lib/asan/asan_interceptors.cpp:452:3
    #1 0x9ab048 in xstrdup /home/ahunt/oss-fuzz/git/wrapper.c:29:14
    #2 0x8b452f in refs_shorten_unambiguous_ref /home/ahunt/oss-fuzz/git/refs.c
    #3 0x8b47e8 in shorten_unambiguous_ref /home/ahunt/oss-fuzz/git/refs.c:1287:9
    #4 0x679fce in check_symref /home/ahunt/oss-fuzz/git/builtin/symbolic-ref.c:28:14
    #5 0x679ad8 in cmd_symbolic_ref /home/ahunt/oss-fuzz/git/builtin/symbolic-ref.c:70:9
    #6 0x4cd60d in run_builtin /home/ahunt/oss-fuzz/git/git.c:453:11
    #7 0x4cb2da in handle_builtin /home/ahunt/oss-fuzz/git/git.c:704:3
    #8 0x4ccc37 in run_argv /home/ahunt/oss-fuzz/git/git.c:771:4
    #9 0x4cac29 in cmd_main /home/ahunt/oss-fuzz/git/git.c:902:19
    #10 0x69cc6e in main /home/ahunt/oss-fuzz/git/common-main.c:52:11
    #11 0x7f98388a4349 in __libc_start_main (/lib64/libc.so.6+0x24349)

Signed-off-by: Andrzej Hunt <ajrhunt@google.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
derrickstolee pushed a commit that referenced this pull request Apr 10, 2021
dwim_ref() allocs a new string into ref. Instead of setting to NULL to
discard it, we can FREE_AND_NULL.

This leak appears to have been introduced in:
4cf76f6 (builtin/reset: compute checkout metadata for reset, 2020-03-16)

This leak was found when running t0001 with LSAN, see also LSAN output below:

Direct leak of 5 byte(s) in 1 object(s) allocated from:
    #0 0x486514 in strdup /home/abuild/rpmbuild/BUILD/llvm-11.0.0.src/build/../projects/compiler-rt/lib/asan/asan_interceptors.cpp:452:3
    #1 0x9a7108 in xstrdup /home/ahunt/oss-fuzz/git/wrapper.c:29:14
    #2 0x8add6b in expand_ref /home/ahunt/oss-fuzz/git/refs.c:670:12
    #3 0x8ad777 in repo_dwim_ref /home/ahunt/oss-fuzz/git/refs.c:644:22
    #4 0x6394af in dwim_ref /home/ahunt/oss-fuzz/git/./refs.h:162:9
    #5 0x637e5c in cmd_reset /home/ahunt/oss-fuzz/git/builtin/reset.c:426:4
    #6 0x4cd60d in run_builtin /home/ahunt/oss-fuzz/git/git.c:453:11
    #7 0x4cb2da in handle_builtin /home/ahunt/oss-fuzz/git/git.c:704:3
    #8 0x4ccc37 in run_argv /home/ahunt/oss-fuzz/git/git.c:771:4
    #9 0x4cac29 in cmd_main /home/ahunt/oss-fuzz/git/git.c:902:19
    #10 0x69c5ce in main /home/ahunt/oss-fuzz/git/common-main.c:52:11
    #11 0x7f57ebb9d349 in __libc_start_main (/lib64/libc.so.6+0x24349)

Signed-off-by: Andrzej Hunt <ajrhunt@google.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
derrickstolee pushed a commit that referenced this pull request May 14, 2021
prefix_filename() returns newly allocated memory, and strbuf_addstr()
doesn't take ownership of its inputs. Therefore we have to make sure to
store and free prefix_filename()'s result.

As this leak is in cmd_bugreport(), we could just as well UNLEAK the
prefix - but there's no good reason not to just free it properly. This
leak was found while running t0091, see output below:

Direct leak of 24 byte(s) in 1 object(s) allocated from:
    #0 0x49ab79 in realloc /home/abuild/rpmbuild/BUILD/llvm-11.0.0.src/build/../projects/compiler-rt/lib/asan/asan_malloc_linux.cpp:164:3
    #1 0x9acc66 in xrealloc wrapper.c:126:8
    #2 0x93baed in strbuf_grow strbuf.c:98:2
    #3 0x93c6ea in strbuf_add strbuf.c:295:2
    #4 0x69f162 in strbuf_addstr ./strbuf.h:304:2
    #5 0x69f083 in prefix_filename abspath.c:277:2
    #6 0x4fb275 in cmd_bugreport builtin/bugreport.c:146:9
    #7 0x4cd91d in run_builtin git.c:467:11
    #8 0x4cb5f3 in handle_builtin git.c:719:3
    #9 0x4ccf47 in run_argv git.c:808:4
    #10 0x4caf49 in cmd_main git.c:939:19
    #11 0x69df9e in main common-main.c:52:11
    #12 0x7f523a987349 in __libc_start_main (/lib64/libc.so.6+0x24349)

Signed-off-by: Andrzej Hunt <ajrhunt@google.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
derrickstolee pushed a commit that referenced this pull request May 14, 2021
parse_pathspec() allocates new memory into pathspec, therefore we need
to free it when we're done.

An UNLEAK would probably be just as good here - but clear_pathspec() is
not much more work so we might as well use it. check_ignore() is either
called once directly from cmd_check_ignore() (in which case the leak
really doesnt matter), or it can be called multiple times in a loop from
check_ignore_stdin_paths(), in which case we're potentially leaking
multiple times - but even in this scenario the leak is so small as to
have no real consequence.

Found while running t0008:

Direct leak of 112 byte(s) in 1 object(s) allocated from:
    #0 0x49a85d in malloc ../projects/compiler-rt/lib/asan/asan_malloc_linux.cpp:145:3
    #1 0x9aca44 in do_xmalloc wrapper.c:41:8
    #2 0x9aca1a in xmalloc wrapper.c:62:9
    #3 0x873c17 in parse_pathspec pathspec.c:582:2
    #4 0x503eb8 in check_ignore builtin/check-ignore.c:90:2
    #5 0x5038af in cmd_check_ignore builtin/check-ignore.c:190:17
    #6 0x4cd91d in run_builtin git.c:467:11
    #7 0x4cb5f3 in handle_builtin git.c:719:3
    #8 0x4ccf47 in run_argv git.c:808:4
    #9 0x4caf49 in cmd_main git.c:939:19
    #10 0x69e43e in main common-main.c:52:11
    #11 0x7f18bb0dd349 in __libc_start_main (/lib64/libc.so.6+0x24349)

Indirect leak of 65 byte(s) in 1 object(s) allocated from:
    #0 0x49ab79 in realloc ../projects/compiler-rt/lib/asan/asan_malloc_linux.cpp:164:3
    #1 0x9acc46 in xrealloc wrapper.c:126:8
    #2 0x93baed in strbuf_grow strbuf.c:98:2
    #3 0x93d696 in strbuf_vaddf strbuf.c:392:3
    #4 0x9400c6 in xstrvfmt strbuf.c:979:2
    #5 0x940253 in xstrfmt strbuf.c:989:8
    #6 0x92b72a in prefix_path_gently setup.c:115:15
    #7 0x87442d in init_pathspec_item pathspec.c:439:11
    #8 0x873cef in parse_pathspec pathspec.c:589:3
    #9 0x503eb8 in check_ignore builtin/check-ignore.c:90:2
    #10 0x5038af in cmd_check_ignore builtin/check-ignore.c:190:17
    #11 0x4cd91d in run_builtin git.c:467:11
    #12 0x4cb5f3 in handle_builtin git.c:719:3
    #13 0x4ccf47 in run_argv git.c:808:4
    #14 0x4caf49 in cmd_main git.c:939:19
    #15 0x69e43e in main common-main.c:52:11
    #16 0x7f18bb0dd349 in __libc_start_main (/lib64/libc.so.6+0x24349)

Indirect leak of 2 byte(s) in 1 object(s) allocated from:
    #0 0x486834 in strdup ../projects/compiler-rt/lib/asan/asan_interceptors.cpp:452:3
    #1 0x9ac9e8 in xstrdup wrapper.c:29:14
    #2 0x874542 in init_pathspec_item pathspec.c:468:20
    #3 0x873cef in parse_pathspec pathspec.c:589:3
    #4 0x503eb8 in check_ignore builtin/check-ignore.c:90:2
    #5 0x5038af in cmd_check_ignore builtin/check-ignore.c:190:17
    #6 0x4cd91d in run_builtin git.c:467:11
    #7 0x4cb5f3 in handle_builtin git.c:719:3
    #8 0x4ccf47 in run_argv git.c:808:4
    #9 0x4caf49 in cmd_main git.c:939:19
    #10 0x69e43e in main common-main.c:52:11
    #11 0x7f18bb0dd349 in __libc_start_main (/lib64/libc.so.6+0x24349)

SUMMARY: AddressSanitizer: 179 byte(s) leaked in 3 allocation(s).

Signed-off-by: Andrzej Hunt <ajrhunt@google.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
derrickstolee pushed a commit that referenced this pull request May 14, 2021
add_pending_object() populates rev.pending, we need to take care of
clearing it once we're done.

This code is run close to the end of a checkout, therefore this leak
seems like it would have very little impact. See also LSAN output
from t0020 below:

Direct leak of 2048 byte(s) in 1 object(s) allocated from:
    #0 0x49ab79 in realloc ../projects/compiler-rt/lib/asan/asan_malloc_linux.cpp:164:3
    #1 0x9acc46 in xrealloc wrapper.c:126:8
    #2 0x83e3a3 in add_object_array_with_path object.c:337:3
    #3 0x8f672a in add_pending_object_with_path revision.c:329:2
    #4 0x8eaeab in add_pending_object_with_mode revision.c:336:2
    #5 0x8eae9d in add_pending_object revision.c:342:2
    #6 0x5154a0 in show_local_changes builtin/checkout.c:602:2
    #7 0x513b00 in merge_working_tree builtin/checkout.c:979:3
    #8 0x512cb3 in switch_branches builtin/checkout.c:1242:9
    #9 0x50f8de in checkout_branch builtin/checkout.c:1646:9
    #10 0x50ba12 in checkout_main builtin/checkout.c:2003:9
    #11 0x5086c0 in cmd_checkout builtin/checkout.c:2055:8
    #12 0x4cd91d in run_builtin git.c:467:11
    #13 0x4cb5f3 in handle_builtin git.c:719:3
    #14 0x4ccf47 in run_argv git.c:808:4
    #15 0x4caf49 in cmd_main git.c:939:19
    #16 0x69e43e in main common-main.c:52:11
    #17 0x7f5dd1d50349 in __libc_start_main (/lib64/libc.so.6+0x24349)

SUMMARY: AddressSanitizer: 2048 byte(s) leaked in 1 allocation(s).
Signed-off-by: Andrzej Hunt <ajrhunt@google.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
derrickstolee pushed a commit that referenced this pull request May 14, 2021
mailinfo.p_hdr_info/s_hdr_info are null-terminated lists of strbuf's,
with entries pointing either to NULL or an allocated strbuf. Therefore
we need to free those strbuf's (and not just the data they contain)
whenever we're done with a given entry. (See handle_header() where those
new strbufs are malloc'd.)

Once we no longer need the list (and not just its entries) we can switch
over to strbuf_list_free() instead of manually iterating over the list,
which takes care of those additional details for us. We can only do this
in clear_mailinfo() - in handle_commit_message() we are only clearing the
array contents but want to reuse the array itself, hence we can't use
strbuf_list_free() there.

However, strbuf_list_free() cannot handle a NULL input, and the lists we
are freeing might be NULL. Therefore we add a NULL check in
strbuf_list_free() to make it safe to use with a NULL input (which is a
pattern used by some of the other *_free() functions around git).

Leak output from t0023:

Direct leak of 72 byte(s) in 3 object(s) allocated from:
    #0 0x49a85d in malloc ../projects/compiler-rt/lib/asan/asan_malloc_linux.cpp:145:3
    #1 0x9ac9f4 in do_xmalloc wrapper.c:41:8
    #2 0x9ac9ca in xmalloc wrapper.c:62:9
    #3 0x7f6cf7 in handle_header mailinfo.c:205:10
    #4 0x7f5abf in check_header mailinfo.c:583:4
    #5 0x7f5524 in mailinfo mailinfo.c:1197:3
    #6 0x4dcc95 in parse_mail builtin/am.c:1167:6
    #7 0x4d9070 in am_run builtin/am.c:1732:12
    #8 0x4d5b7a in cmd_am builtin/am.c:2398:3
    #9 0x4cd91d in run_builtin git.c:467:11
    #10 0x4cb5f3 in handle_builtin git.c:719:3
    #11 0x4ccf47 in run_argv git.c:808:4
    #12 0x4caf49 in cmd_main git.c:939:19
    #13 0x69e43e in main common-main.c:52:11
    #14 0x7fc1fadfa349 in __libc_start_main (/lib64/libc.so.6+0x24349)

SUMMARY: AddressSanitizer: 72 byte(s) leaked in 3 allocation(s).

Signed-off-by: Andrzej Hunt <ajrhunt@google.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
derrickstolee pushed a commit that referenced this pull request May 14, 2021
sorting might be a list allocated in ref_default_sorting() (in this case
it's a fixed single item list, which has nevertheless been xcalloc'd),
or it might be a list allocated in parse_opt_ref_sorting(). In either
case we could free these lists - but instead we UNLEAK as we're at the
end of cmd_for_each_ref. (There's no existing implementation of
clear_ref_sorting(), and writing a loop to free the list seems more
trouble than it's worth.)

filter.with_commit/no_commit are populated via
OPT_CONTAINS/OPT_NO_CONTAINS, both of which create new entries via
parse_opt_commits(), and also need to be free'd or UNLEAK'd. Because
free_commit_list() already exists, we choose to use that over an UNLEAK.

LSAN output from t0041:

Direct leak of 16 byte(s) in 1 object(s) allocated from:
    #0 0x49a9d2 in calloc ../projects/compiler-rt/lib/asan/asan_malloc_linux.cpp:154:3
    #1 0x9ac252 in xcalloc wrapper.c:140:8
    #2 0x8a4a55 in ref_default_sorting ref-filter.c:2486:32
    #3 0x56c6b1 in cmd_for_each_ref builtin/for-each-ref.c:72:13
    #4 0x4cd91d in run_builtin git.c:467:11
    #5 0x4cb5f3 in handle_builtin git.c:719:3
    #6 0x4ccf47 in run_argv git.c:808:4
    #7 0x4caf49 in cmd_main git.c:939:19
    #8 0x69dabe in main common-main.c:52:11
    #9 0x7f2bdc570349 in __libc_start_main (/lib64/libc.so.6+0x24349)

Direct leak of 16 byte(s) in 1 object(s) allocated from:
    #0 0x49a85d in malloc ../projects/compiler-rt/lib/asan/asan_malloc_linux.cpp:145:3
    #1 0x9abf54 in do_xmalloc wrapper.c:41:8
    #2 0x9abf2a in xmalloc wrapper.c:62:9
    #3 0x717486 in commit_list_insert commit.c:540:33
    #4 0x8644cf in parse_opt_commits parse-options-cb.c:98:2
    #5 0x869bb5 in get_value parse-options.c:181:11
    #6 0x8677dc in parse_long_opt parse-options.c:378:10
    #7 0x8659bd in parse_options_step parse-options.c:817:11
    #8 0x867fcd in parse_options parse-options.c:870:10
    #9 0x56c62b in cmd_for_each_ref builtin/for-each-ref.c:59:2
    #10 0x4cd91d in run_builtin git.c:467:11
    #11 0x4cb5f3 in handle_builtin git.c:719:3
    #12 0x4ccf47 in run_argv git.c:808:4
    #13 0x4caf49 in cmd_main git.c:939:19
    #14 0x69dabe in main common-main.c:52:11
    #15 0x7f2bdc570349 in __libc_start_main (/lib64/libc.so.6+0x24349)

Signed-off-by: Andrzej Hunt <ajrhunt@google.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
derrickstolee pushed a commit that referenced this pull request May 14, 2021
options.git_format_patch_opt can be populated during cmd_rebase's setup,
and will therefore leak on return. Although we could just UNLEAK all of
options, we choose to strbuf_release() the individual member, which matches
the existing pattern (where we're freeing invidual members of options).

Leak found when running t0021:

Direct leak of 24 byte(s) in 1 object(s) allocated from:
    #0 0x49ab79 in realloc ../projects/compiler-rt/lib/asan/asan_malloc_linux.cpp:164:3
    #1 0x9ac296 in xrealloc wrapper.c:126:8
    #2 0x93b13d in strbuf_grow strbuf.c:98:2
    #3 0x93bd3a in strbuf_add strbuf.c:295:2
    #4 0x60ae92 in strbuf_addstr strbuf.h:304:2
    #5 0x605f17 in cmd_rebase builtin/rebase.c:1759:3
    #6 0x4cd91d in run_builtin git.c:467:11
    #7 0x4cb5f3 in handle_builtin git.c:719:3
    #8 0x4ccf47 in run_argv git.c:808:4
    #9 0x4caf49 in cmd_main git.c:939:19
    #10 0x69dbfe in main common-main.c:52:11
    #11 0x7f66dae91349 in __libc_start_main (/lib64/libc.so.6+0x24349)

SUMMARY: AddressSanitizer: 24 byte(s) leaked in 1 allocation(s).

Signed-off-by: Andrzej Hunt <ajrhunt@google.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
derrickstolee pushed a commit that referenced this pull request May 14, 2021
parse_pathspec() populates pathspec, hence we need to clear it once it's
no longer needed. seen is xcalloc'd within the same function and
likewise needs to be freed once its no longer needed.

cmd_rm() has multiple early returns, therefore we need to clear or free
as soon as this data is no longer needed, as opposed to doing a cleanup
at the end.

LSAN output from t0020:

Direct leak of 112 byte(s) in 1 object(s) allocated from:
    #0 0x49a85d in malloc ../projects/compiler-rt/lib/asan/asan_malloc_linux.cpp:145:3
    #1 0x9ac0a4 in do_xmalloc wrapper.c:41:8
    #2 0x9ac07a in xmalloc wrapper.c:62:9
    #3 0x873277 in parse_pathspec pathspec.c:582:2
    #4 0x646ffa in cmd_rm builtin/rm.c:266:2
    #5 0x4cd91d in run_builtin git.c:467:11
    #6 0x4cb5f3 in handle_builtin git.c:719:3
    #7 0x4ccf47 in run_argv git.c:808:4
    #8 0x4caf49 in cmd_main git.c:939:19
    #9 0x69dc0e in main common-main.c:52:11
    #10 0x7f948825b349 in __libc_start_main (/lib64/libc.so.6+0x24349)

Indirect leak of 65 byte(s) in 1 object(s) allocated from:
    #0 0x49ab79 in realloc ../projects/compiler-rt/lib/asan/asan_malloc_linux.cpp:164:3
    #1 0x9ac2a6 in xrealloc wrapper.c:126:8
    #2 0x93b14d in strbuf_grow strbuf.c:98:2
    #3 0x93ccf6 in strbuf_vaddf strbuf.c:392:3
    #4 0x93f726 in xstrvfmt strbuf.c:979:2
    #5 0x93f8b3 in xstrfmt strbuf.c:989:8
    #6 0x92ad8a in prefix_path_gently setup.c:115:15
    #7 0x873a8d in init_pathspec_item pathspec.c:439:11
    #8 0x87334f in parse_pathspec pathspec.c:589:3
    #9 0x646ffa in cmd_rm builtin/rm.c:266:2
    #10 0x4cd91d in run_builtin git.c:467:11
    #11 0x4cb5f3 in handle_builtin git.c:719:3
    #12 0x4ccf47 in run_argv git.c:808:4
    #13 0x4caf49 in cmd_main git.c:939:19
    #14 0x69dc0e in main common-main.c:52:11
    #15 0x7f948825b349 in __libc_start_main (/lib64/libc.so.6+0x24349)

Indirect leak of 15 byte(s) in 1 object(s) allocated from:
    #0 0x486834 in strdup ../projects/compiler-rt/lib/asan/asan_interceptors.cpp:452:3
    #1 0x9ac048 in xstrdup wrapper.c:29:14
    #2 0x873ba2 in init_pathspec_item pathspec.c:468:20
    #3 0x87334f in parse_pathspec pathspec.c:589:3
    #4 0x646ffa in cmd_rm builtin/rm.c:266:2
    #5 0x4cd91d in run_builtin git.c:467:11
    #6 0x4cb5f3 in handle_builtin git.c:719:3
    #7 0x4ccf47 in run_argv git.c:808:4
    #8 0x4caf49 in cmd_main git.c:939:19
    #9 0x69dc0e in main common-main.c:52:11
    #10 0x7f948825b349 in __libc_start_main (/lib64/libc.so.6+0x24349)

Direct leak of 1 byte(s) in 1 object(s) allocated from:
    #0 0x49a9d2 in calloc ../projects/compiler-rt/lib/asan/asan_malloc_linux.cpp:154:3
    #1 0x9ac392 in xcalloc wrapper.c:140:8
    #2 0x647108 in cmd_rm builtin/rm.c:294:9
    #3 0x4cd91d in run_builtin git.c:467:11
    #4 0x4cb5f3 in handle_builtin git.c:719:3
    #5 0x4ccf47 in run_argv git.c:808:4
    #6 0x4caf49 in cmd_main git.c:939:19
    #7 0x69dbfe in main common-main.c:52:11
    #8 0x7f4fac1b0349 in __libc_start_main (/lib64/libc.so.6+0x24349)

Signed-off-by: Andrzej Hunt <ajrhunt@google.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
derrickstolee pushed a commit that referenced this pull request May 24, 2021
Commit 878f988 (t/test-lib: teach --chain-lint to detect broken
&&-chains in subshells, 2018-07-11) introduced additional chain-lint
tests which add an extra "sed" pipeline to each test we run. This has a
measurable impact on runtime. Here are timings with and without a new
environment variable (added by this patch) that lets you disable just
the additional sed-based chain-lint tests:

  Benchmark #1: GIT_TEST_CHAIN_LINT_HARDER=1 make test
    Time (mean ± σ):     64.202 s ±  1.030 s    [User: 622.469 s, System: 301.402 s]
    Range (min … max):   61.571 s … 65.662 s    10 runs

  Benchmark #2: GIT_TEST_CHAIN_LINT_HARDER=0 make test
    Time (mean ± σ):     57.591 s ±  0.333 s    [User: 529.368 s, System: 270.618 s]
    Range (min … max):   57.143 s … 58.309 s    10 runs

  Summary
    'GIT_TEST_CHAIN_LINT_HARDER=0 make test' ran
      1.11 ± 0.02 times faster than 'GIT_TEST_CHAIN_LINT_HARDER=1 make test'

Of course those extra lint checks are doing something useful, so paying
a few extra seconds (at least on Linux) isn't so bad (though note the
CPU time; we're bounded in our parallel run here by the slowest test, so
it really is ~120s of CPU improvement).

But we can observe that there are some test scripts where they produce a
much stronger effect, and provide less value. In t0027 and t3070 we run
a very large number of small tests, all driven by a series of
functions/loops which are filling in the test bodies. There we get much
less bang for our buck in terms of bug-finding versus CPU cost.

This patch introduces a mechanism for controlling when those extra
lint checks are run, at two levels:

  - a user can ask to disable or to force-enable the checks by setting
    GIT_TEST_CHAIN_LINT_HARDER

  - if the user hasn't specified a preference, individual scripts can
    disable the checks by setting GIT_TEST_CHAIN_LINT_HARDER_DEFAULT;
    scripts which don't set that get the current behavior of enabling
    them.

In addition, this patch flips the default for t0027 and t3070's
mass-generated sections to disable the extra checks. Here are the timing
results for t0027:

  Benchmark #1: GIT_TEST_CHAIN_LINT_HARDER=1 ./t0027-auto-crlf.sh
    Time (mean ± σ):     17.078 s ±  0.848 s    [User: 14.878 s, System: 7.075 s]
    Range (min … max):   15.952 s … 18.421 s    10 runs

  Benchmark #2: GIT_TEST_CHAIN_LINT_HARDER=0 ./t0027-auto-crlf.sh
    Time (mean ± σ):      9.063 s ±  0.759 s    [User: 7.890 s, System: 3.362 s]
    Range (min … max):    7.747 s … 10.619 s    10 runs

  Benchmark #3: ./t0027-auto-crlf.sh
    Time (mean ± σ):      9.186 s ±  0.881 s    [User: 7.957 s, System: 3.427 s]
    Range (min … max):    7.796 s … 10.498 s    10 runs

  Summary
    'GIT_TEST_CHAIN_LINT_HARDER=0 ./t0027-auto-crlf.sh' ran
      1.01 ± 0.13 times faster than './t0027-auto-crlf.sh'
      1.88 ± 0.18 times faster than 'GIT_TEST_CHAIN_LINT_HARDER=1 ./t0027-auto-crlf.sh'

We can see that disabling the checks for the whole script buys us an
almost 2x speedup. But the new default behavior, disabling them only for
the mass-generated part, gets us most of that speedup (but still leaves
the checks on for further manual tests people might write).

  As a side note, I'd caution about comparing runtimes and CPU seconds
  between this timing and the earlier "make test" one. In "make test",
  we're running a lot of scripts in parallel, so the CPU is throttling
  down (and thus a CPU second saved here would count for more during a
  parallel run; the same work takes more CPU seconds there).

We get similar results for t3070:

  Benchmark #1: GIT_TEST_CHAIN_LINT_HARDER=1 ./t3070-wildmatch.sh
    Time (mean ± σ):     20.054 s ±  3.967 s    [User: 16.003 s, System: 8.286 s]
    Range (min … max):   11.891 s … 23.671 s    10 runs

  Benchmark #2: GIT_TEST_CHAIN_LINT_HARDER=0 ./t3070-wildmatch.sh
    Time (mean ± σ):     12.399 s ±  2.256 s    [User: 7.542 s, System: 5.342 s]
    Range (min … max):    9.606 s … 15.727 s    10 runs

  Benchmark #3: ./t3070-wildmatch.sh
    Time (mean ± σ):     10.726 s ±  3.476 s    [User: 6.790 s, System: 4.365 s]
    Range (min … max):    5.444 s … 15.376 s    10 runs

  Summary
    './t3070-wildmatch.sh' ran
      1.16 ± 0.43 times faster than 'GIT_TEST_CHAIN_LINT_HARDER=0 ./t3070-wildmatch.sh'
      1.87 ± 0.71 times faster than 'GIT_TEST_CHAIN_LINT_HARDER=1 ./t3070-wildmatch.sh'

Again, we get almost a 2x speedup disabling these. In this case, there
are no tests not covered by the script's "default to disable" behavior,
so the second two benchmarks should be the same (and while they do
differ, you can see the variance is quite high but they're within one
standard deviation).

So it seems like for these two scripts, at least, disabling the extra
checks is a reasonable tradeoff. Sadly, the overall runtime of "make
test" on my system doesn't get much faster. But that's because we're
mostly limited by the cost of the single biggest test. Here are the
top-5 tests by wall-clock time from a parallel run, before my patch:

  57.9192368984222 t9001-send-email.sh
  45.6329638957977 t0027-auto-crlf.sh
  32.5278220176697 t3070-wildmatch.sh
  22.2701289653778 t7610-mergetool.sh
  20.8635759353638 t1701-racy-split-index.sh

And after:

  57.1476998329163 t9001-send-email.sh
  33.776211977005 t0027-auto-crlf.sh
  21.3116669654846 t7610-mergetool.sh
  20.7748689651489 t1701-racy-split-index.sh
  19.6957249641418 t7112-reset-submodule.sh

We dropped 12s from t0027, and t3070 dropped off our list entirely at
around 16s. In both cases we're bound by t9001, but its slowness is
due to the actual tests, so we'll have to deal with it in a different
way. But this reduces overall CPU, and means that dealing with t9001 (by
improving the speed of send-email or splitting it apart) will let us
reduce our overall runtime even on multi-core machines.

Signed-off-by: Jeff King <peff@peff.net>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
derrickstolee pushed a commit that referenced this pull request Jun 28, 2021
write_commit_graph initialises topo_levels using init_topo_level_slab(),
next it calls compute_topological_levels() which can cause the slab to
grow, we therefore need to clear the slab again using
clear_topo_level_slab() when we're done.

First introduced in 72a2bfc (commit-graph: add a slab to store
topological levels, 2021-01-16).

LeakSanitizer output:

==1026==ERROR: LeakSanitizer: detected memory leaks

Direct leak of 8 byte(s) in 1 object(s) allocated from:
    #0 0x498ae9 in realloc /src/llvm-project/compiler-rt/lib/asan/asan_malloc_linux.cpp:164:3
    #1 0xafbed8 in xrealloc /src/git/wrapper.c:126:8
    #2 0x7966d1 in topo_level_slab_at_peek /src/git/commit-graph.c:71:1
    #3 0x7965e0 in topo_level_slab_at /src/git/commit-graph.c:71:1
    #4 0x78fbf5 in compute_topological_levels /src/git/commit-graph.c:1472:12
    #5 0x78c5c3 in write_commit_graph /src/git/commit-graph.c:2456:2
    #6 0x535c5f in graph_write /src/git/builtin/commit-graph.c:299:6
    #7 0x5350ca in cmd_commit_graph /src/git/builtin/commit-graph.c:337:11
    #8 0x4cddb1 in run_builtin /src/git/git.c:453:11
    #9 0x4cabe2 in handle_builtin /src/git/git.c:704:3
    #10 0x4cd084 in run_argv /src/git/git.c:771:4
    #11 0x4ca424 in cmd_main /src/git/git.c:902:19
    #12 0x707fb6 in main /src/git/common-main.c:52:11
    #13 0x7fee4249383f in __libc_start_main (/lib/x86_64-linux-gnu/libc.so.6+0x2083f)

Indirect leak of 524256 byte(s) in 1 object(s) allocated from:
    #0 0x498942 in calloc /src/llvm-project/compiler-rt/lib/asan/asan_malloc_linux.cpp:154:3
    #1 0xafc088 in xcalloc /src/git/wrapper.c:140:8
    #2 0x796870 in topo_level_slab_at_peek /src/git/commit-graph.c:71:1
    #3 0x7965e0 in topo_level_slab_at /src/git/commit-graph.c:71:1
    #4 0x78fbf5 in compute_topological_levels /src/git/commit-graph.c:1472:12
    #5 0x78c5c3 in write_commit_graph /src/git/commit-graph.c:2456:2
    #6 0x535c5f in graph_write /src/git/builtin/commit-graph.c:299:6
    #7 0x5350ca in cmd_commit_graph /src/git/builtin/commit-graph.c:337:11
    #8 0x4cddb1 in run_builtin /src/git/git.c:453:11
    #9 0x4cabe2 in handle_builtin /src/git/git.c:704:3
    #10 0x4cd084 in run_argv /src/git/git.c:771:4
    #11 0x4ca424 in cmd_main /src/git/git.c:902:19
    #12 0x707fb6 in main /src/git/common-main.c:52:11
    #13 0x7fee4249383f in __libc_start_main (/lib/x86_64-linux-gnu/libc.so.6+0x2083f)

SUMMARY: AddressSanitizer: 524264 byte(s) leaked in 2 allocation(s).

Signed-off-by: Andrzej Hunt <ajrhunt@google.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
derrickstolee pushed a commit that referenced this pull request Jul 12, 2021
ibuf can be reused for multiple iterations of the loop. Specifically:
deflate() overwrites s.avail_in to show how much of the input buffer
has not been processed yet - and sometimes leaves 'avail_in > 0', in
which case ibuf will be processed again during the loop's subsequent
iteration.

But if we declare ibuf within the loop, then (in theory) we get a new
(and uninitialised) buffer for every iteration. In practice, my compiler
seems to resue the same buffer - meaning that this code does work - but
it doesn't seem safe to rely on this behaviour. MSAN correctly catches
this issue - as soon as we hit the 's.avail_in > 0' condition, we end up
reading from what seems to be uninitialised memory.

Therefore, we move ibuf out of the loop, making this reuse safe.

See MSAN output from t1050-large below - the interesting part is the
ibuf creation at the end, although there's a lot of indirection before
we reach the read from unitialised memory:

==11294==WARNING: MemorySanitizer: use-of-uninitialized-value
    #0 0x7f75db58fb1c in crc32_little crc32.c:283:9
    #1 0x7f75db58d5b3 in crc32_z crc32.c:220:20
    #2 0x7f75db59668c in crc32 crc32.c:242:12
    #3 0x8c94f8 in hashwrite csum-file.c:101:15
    #4 0x825faf in stream_to_pack bulk-checkin.c:154:5
    #5 0x82467b in deflate_to_pack bulk-checkin.c:225:8
    #6 0x823ff1 in index_bulk_checkin bulk-checkin.c:264:15
    #7 0xa7cff2 in index_stream object-file.c:2234:9
    #8 0xa7bff7 in index_fd object-file.c:2256:9
    #9 0xa7d22d in index_path object-file.c:2274:7
    #10 0xb3c8c9 in add_to_index read-cache.c:802:7
    #11 0xb3e039 in add_file_to_index read-cache.c:835:9
    #12 0x4a99c3 in add_files add.c:458:7
    #13 0x4a7276 in cmd_add add.c:670:18
    #14 0x4a1e76 in run_builtin git.c:461:11
    #15 0x49e1e7 in handle_builtin git.c:714:3
    #16 0x4a0c08 in run_argv git.c:781:4
    #17 0x49d5a8 in cmd_main git.c:912:19
    #18 0x7974da in main common-main.c:52:11
    #19 0x7f75da66f349 in __libc_start_main (/lib64/libc.so.6+0x24349)
    #20 0x421bd9 in _start start.S:120

  Uninitialized value was stored to memory at
    #0 0x7f75db58fa6b in crc32_little crc32.c:283:9
    #1 0x7f75db58d5b3 in crc32_z crc32.c:220:20
    #2 0x7f75db59668c in crc32 crc32.c:242:12
    #3 0x8c94f8 in hashwrite csum-file.c:101:15
    #4 0x825faf in stream_to_pack bulk-checkin.c:154:5
    #5 0x82467b in deflate_to_pack bulk-checkin.c:225:8
    #6 0x823ff1 in index_bulk_checkin bulk-checkin.c:264:15
    #7 0xa7cff2 in index_stream object-file.c:2234:9
    #8 0xa7bff7 in index_fd object-file.c:2256:9
    #9 0xa7d22d in index_path object-file.c:2274:7
    #10 0xb3c8c9 in add_to_index read-cache.c:802:7
    #11 0xb3e039 in add_file_to_index read-cache.c:835:9
    #12 0x4a99c3 in add_files add.c:458:7
    #13 0x4a7276 in cmd_add add.c:670:18
    #14 0x4a1e76 in run_builtin git.c:461:11
    #15 0x49e1e7 in handle_builtin git.c:714:3
    #16 0x4a0c08 in run_argv git.c:781:4
    #17 0x49d5a8 in cmd_main git.c:912:19
    #18 0x7974da in main common-main.c:52:11
    #19 0x7f75da66f349 in __libc_start_main (/lib64/libc.so.6+0x24349)

  Uninitialized value was stored to memory at
    #0 0x447eb9 in __msan_memcpy msan_interceptors.cpp:1558:3
    #1 0x7f75db5c2011 in flush_pending deflate.c:746:5
    #2 0x7f75db5cafa0 in deflate_stored deflate.c:1815:9
    #3 0x7f75db5bb7d2 in deflate deflate.c:1005:34
    #4 0xd80b7f in git_deflate zlib.c:244:12
    #5 0x825dff in stream_to_pack bulk-checkin.c:140:12
    #6 0x82467b in deflate_to_pack bulk-checkin.c:225:8
    #7 0x823ff1 in index_bulk_checkin bulk-checkin.c:264:15
    #8 0xa7cff2 in index_stream object-file.c:2234:9
    #9 0xa7bff7 in index_fd object-file.c:2256:9
    #10 0xa7d22d in index_path object-file.c:2274:7
    #11 0xb3c8c9 in add_to_index read-cache.c:802:7
    #12 0xb3e039 in add_file_to_index read-cache.c:835:9
    #13 0x4a99c3 in add_files add.c:458:7
    #14 0x4a7276 in cmd_add add.c:670:18
    #15 0x4a1e76 in run_builtin git.c:461:11
    #16 0x49e1e7 in handle_builtin git.c:714:3
    #17 0x4a0c08 in run_argv git.c:781:4
    #18 0x49d5a8 in cmd_main git.c:912:19
    #19 0x7974da in main common-main.c:52:11

  Uninitialized value was stored to memory at
    #0 0x447eb9 in __msan_memcpy msan_interceptors.cpp:1558:3
    #1 0x7f75db644241 in _tr_stored_block trees.c:873:5
    #2 0x7f75db5cad7c in deflate_stored deflate.c:1813:9
    #3 0x7f75db5bb7d2 in deflate deflate.c:1005:34
    #4 0xd80b7f in git_deflate zlib.c:244:12
    #5 0x825dff in stream_to_pack bulk-checkin.c:140:12
    #6 0x82467b in deflate_to_pack bulk-checkin.c:225:8
    #7 0x823ff1 in index_bulk_checkin bulk-checkin.c:264:15
    #8 0xa7cff2 in index_stream object-file.c:2234:9
    #9 0xa7bff7 in index_fd object-file.c:2256:9
    #10 0xa7d22d in index_path object-file.c:2274:7
    #11 0xb3c8c9 in add_to_index read-cache.c:802:7
    #12 0xb3e039 in add_file_to_index read-cache.c:835:9
    #13 0x4a99c3 in add_files add.c:458:7
    #14 0x4a7276 in cmd_add add.c:670:18
    #15 0x4a1e76 in run_builtin git.c:461:11
    #16 0x49e1e7 in handle_builtin git.c:714:3
    #17 0x4a0c08 in run_argv git.c:781:4
    #18 0x49d5a8 in cmd_main git.c:912:19
    #19 0x7974da in main common-main.c:52:11

  Uninitialized value was stored to memory at
    #0 0x447eb9 in __msan_memcpy msan_interceptors.cpp:1558:3
    #1 0x7f75db5c8fcf in deflate_stored deflate.c:1783:9
    #2 0x7f75db5bb7d2 in deflate deflate.c:1005:34
    #3 0xd80b7f in git_deflate zlib.c:244:12
    #4 0x825dff in stream_to_pack bulk-checkin.c:140:12
    #5 0x82467b in deflate_to_pack bulk-checkin.c:225:8
    #6 0x823ff1 in index_bulk_checkin bulk-checkin.c:264:15
    #7 0xa7cff2 in index_stream object-file.c:2234:9
    #8 0xa7bff7 in index_fd object-file.c:2256:9
    #9 0xa7d22d in index_path object-file.c:2274:7
    #10 0xb3c8c9 in add_to_index read-cache.c:802:7
    #11 0xb3e039 in add_file_to_index read-cache.c:835:9
    #12 0x4a99c3 in add_files add.c:458:7
    #13 0x4a7276 in cmd_add add.c:670:18
    #14 0x4a1e76 in run_builtin git.c:461:11
    #15 0x49e1e7 in handle_builtin git.c:714:3
    #16 0x4a0c08 in run_argv git.c:781:4
    #17 0x49d5a8 in cmd_main git.c:912:19
    #18 0x7974da in main common-main.c:52:11
    #19 0x7f75da66f349 in __libc_start_main (/lib64/libc.so.6+0x24349)

  Uninitialized value was stored to memory at
    #0 0x447eb9 in __msan_memcpy msan_interceptors.cpp:1558:3
    #1 0x7f75db5ea545 in read_buf deflate.c:1181:5
    #2 0x7f75db5c97f7 in deflate_stored deflate.c:1791:9
    #3 0x7f75db5bb7d2 in deflate deflate.c:1005:34
    #4 0xd80b7f in git_deflate zlib.c:244:12
    #5 0x825dff in stream_to_pack bulk-checkin.c:140:12
    #6 0x82467b in deflate_to_pack bulk-checkin.c:225:8
    #7 0x823ff1 in index_bulk_checkin bulk-checkin.c:264:15
    #8 0xa7cff2 in index_stream object-file.c:2234:9
    #9 0xa7bff7 in index_fd object-file.c:2256:9
    #10 0xa7d22d in index_path object-file.c:2274:7
    #11 0xb3c8c9 in add_to_index read-cache.c:802:7
    #12 0xb3e039 in add_file_to_index read-cache.c:835:9
    #13 0x4a99c3 in add_files add.c:458:7
    #14 0x4a7276 in cmd_add add.c:670:18
    #15 0x4a1e76 in run_builtin git.c:461:11
    #16 0x49e1e7 in handle_builtin git.c:714:3
    #17 0x4a0c08 in run_argv git.c:781:4
    #18 0x49d5a8 in cmd_main git.c:912:19
    #19 0x7974da in main common-main.c:52:11

  Uninitialized value was created by an allocation of 'ibuf' in the stack frame of function 'stream_to_pack'
    #0 0x825710 in stream_to_pack bulk-checkin.c:101

SUMMARY: MemorySanitizer: use-of-uninitialized-value crc32.c:283:9 in crc32_little
Exiting

Signed-off-by: Andrzej Hunt <andrzej@ahunt.org>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
derrickstolee pushed a commit that referenced this pull request Jul 12, 2021
cache_entry contains an object_id, and compare_ce_content() would
include that field when calling memcmp on a subset of the cache_entry.
Depending on which hashing algorithm is being used, only part of
object_id.hash is actually being used, therefore including it in a
memcmp() is incorrect. Instead we choose to exclude the object_id when
calling memcmp(), and call oideq() separately.

This issue was found when running t1700-split-index with MSAN, see MSAN
output below (on my machine, offset 76 corresponds to 4 bytes after the
start of object_id.hash).

Uninitialized bytes in MemcmpInterceptorCommon at offset 76 inside [0x7f60e7c00118, 92)
==27914==WARNING: MemorySanitizer: use-of-uninitialized-value
    #0 0x4524ee in memcmp /home/abuild/rpmbuild/BUILD/llvm-11.0.0.src/build/../projects/compiler-rt/lib/msan/../sanitizer_common/sanitizer_common_interceptors.inc:873:10
    #1 0xc867ae in compare_ce_content /home/ahunt/git/git/split-index.c:208:8
    #2 0xc859fb in prepare_to_write_split_index /home/ahunt/git/git/split-index.c:336:9
    #3 0xb4bbca in write_split_index /home/ahunt/git/git/read-cache.c:3107:2
    #4 0xb42b4d in write_locked_index /home/ahunt/git/git/read-cache.c:3295:8
    #5 0x638058 in try_merge_strategy /home/ahunt/git/git/builtin/merge.c:758:7
    #6 0x63057f in cmd_merge /home/ahunt/git/git/builtin/merge.c:1663:9
    #7 0x4a1e76 in run_builtin /home/ahunt/git/git/git.c:461:11
    #8 0x49e1e7 in handle_builtin /home/ahunt/git/git/git.c:714:3
    #9 0x4a0c08 in run_argv /home/ahunt/git/git/git.c:781:4
    #10 0x49d5a8 in cmd_main /home/ahunt/git/git/git.c:912:19
    #11 0x7974da in main /home/ahunt/git/git/common-main.c:52:11
    #12 0x7f60e928e349 in __libc_start_main (/lib64/libc.so.6+0x24349)
    #13 0x421bd9 in _start /home/abuild/rpmbuild/BUILD/glibc-2.26/csu/../sysdeps/x86_64/start.S:120

  Uninitialized value was stored to memory at
    #0 0x447eb9 in __msan_memcpy /home/abuild/rpmbuild/BUILD/llvm-11.0.0.src/build/../projects/compiler-rt/lib/msan/msan_interceptors.cpp:1558:3
    #1 0xb4d1e6 in dup_cache_entry /home/ahunt/git/git/read-cache.c:3457:2
    #2 0xd214fa in add_entry /home/ahunt/git/git/unpack-trees.c:215:18
    #3 0xd1fae0 in keep_entry /home/ahunt/git/git/unpack-trees.c:2276:2
    #4 0xd1ff9e in twoway_merge /home/ahunt/git/git/unpack-trees.c:2504:11
    #5 0xd27028 in call_unpack_fn /home/ahunt/git/git/unpack-trees.c:593:12
    #6 0xd2443d in unpack_nondirectories /home/ahunt/git/git/unpack-trees.c:1106:12
    #7 0xd19435 in unpack_callback /home/ahunt/git/git/unpack-trees.c:1306:6
    #8 0xd0d7ff in traverse_trees /home/ahunt/git/git/tree-walk.c:532:17
    #9 0xd1773a in unpack_trees /home/ahunt/git/git/unpack-trees.c:1683:9
    #10 0xdc6370 in checkout /home/ahunt/git/git/merge-ort.c:3590:8
    #11 0xdc51c3 in merge_switch_to_result /home/ahunt/git/git/merge-ort.c:3728:7
    #12 0xa195a9 in merge_ort_recursive /home/ahunt/git/git/merge-ort-wrappers.c:58:2
    #13 0x637fff in try_merge_strategy /home/ahunt/git/git/builtin/merge.c:751:12
    #14 0x63057f in cmd_merge /home/ahunt/git/git/builtin/merge.c:1663:9
    #15 0x4a1e76 in run_builtin /home/ahunt/git/git/git.c:461:11
    #16 0x49e1e7 in handle_builtin /home/ahunt/git/git/git.c:714:3
    #17 0x4a0c08 in run_argv /home/ahunt/git/git/git.c:781:4
    #18 0x49d5a8 in cmd_main /home/ahunt/git/git/git.c:912:19
    #19 0x7974da in main /home/ahunt/git/git/common-main.c:52:11

  Uninitialized value was created by a heap allocation
    #0 0x44e73d in malloc /home/abuild/rpmbuild/BUILD/llvm-11.0.0.src/build/../projects/compiler-rt/lib/msan/msan_interceptors.cpp:901:3
    #1 0xd592f6 in do_xmalloc /home/ahunt/git/git/wrapper.c:41:8
    #2 0xd59248 in xmalloc /home/ahunt/git/git/wrapper.c:62:9
    #3 0xa17088 in mem_pool_alloc_block /home/ahunt/git/git/mem-pool.c:22:6
    #4 0xa16f78 in mem_pool_init /home/ahunt/git/git/mem-pool.c:44:3
    #5 0xb481b8 in load_all_cache_entries /home/ahunt/git/git/read-cache.c
    #6 0xb44d40 in do_read_index /home/ahunt/git/git/read-cache.c:2298:17
    #7 0xb48a1b in read_index_from /home/ahunt/git/git/read-cache.c:2389:8
    #8 0xbd5a0b in repo_read_index /home/ahunt/git/git/repository.c:276:8
    #9 0xb4bcaf in repo_read_index_unmerged /home/ahunt/git/git/read-cache.c:3326:2
    #10 0x62ed26 in cmd_merge /home/ahunt/git/git/builtin/merge.c:1362:6
    #11 0x4a1e76 in run_builtin /home/ahunt/git/git/git.c:461:11
    #12 0x49e1e7 in handle_builtin /home/ahunt/git/git/git.c:714:3
    #13 0x4a0c08 in run_argv /home/ahunt/git/git/git.c:781:4
    #14 0x49d5a8 in cmd_main /home/ahunt/git/git/git.c:912:19
    #15 0x7974da in main /home/ahunt/git/git/common-main.c:52:11
    #16 0x7f60e928e349 in __libc_start_main (/lib64/libc.so.6+0x24349)

SUMMARY: MemorySanitizer: use-of-uninitialized-value /home/abuild/rpmbuild/BUILD/llvm-11.0.0.src/build/../projects/compiler-rt/lib/msan/../sanitizer_common/sanitizer_common_interceptors.inc:873:10 in memcmp
Exiting

Signed-off-by: Andrzej Hunt <andrzej@ahunt.org>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
derrickstolee pushed a commit that referenced this pull request Jul 12, 2021
…ints

report_result() sends a struct to the parent process, but that struct
would contain uninitialised padding bytes. Running this code under MSAN
rightly triggers a warning - but we don't particularly care about this
warning because we control the receiving code, and we therefore know
that those padding bytes won't be read on the receiving end.

We could simply suppress this warning under MSAN with the approporiate
ifdef'd attributes, but a less intrusive solution is to 0-initialise the
struct, which guarantees that the padding will also be initialised.

Interestingly, in the error-case branch, we only try to copy the first
two members of pc_item_result, by copying only PC_ITEM_RESULT_BASE_SIZE
bytes. However PC_ITEM_RESULT_BASE_SIZE is defined as
'offsetof(the_last_member)', which means that we're copying padding bytes
after the end of the second last member. We could avoid doing this by
redefining PC_ITEM_RESULT_BASE_SIZE as
'offsetof(second_last_member) + sizeof(second_last_member)', but there's
no huge benefit to doing so (and this patch silences the MSAN warning in
this scenario either way).

MSAN output from t2080 (partially interleaved due to the
parallel work :) ):

Uninitialized bytes in __interceptor_write at offset 12 inside [0x7fff37d83408, 160)
==23279==WARNING: MemorySanitizer: use-of-uninitialized-value
Uninitialized bytes in __interceptor_write at offset 12 inside [0x7ffdb8a07ec8, 160)
==23280==WARNING: MemorySanitizer: use-of-uninitialized-value
    #0 0xd5ac28 in xwrite /home/ahunt/git/git/wrapper.c:256:8
    #1 0xd5b327 in write_in_full /home/ahunt/git/git/wrapper.c:311:21
    #2 0xb0a8c4 in do_packet_write /home/ahunt/git/git/pkt-line.c:221:6
    #3 0xb0a5fd in packet_write /home/ahunt/git/git/pkt-line.c:242:6
    #4 0x4f7441 in report_result /home/ahunt/git/git/builtin/checkout--worker.c:69:2
    #5 0x4f6be6 in worker_loop /home/ahunt/git/git/builtin/checkout--worker.c:100:3
    #6 0x4f68d3 in cmd_checkout__worker /home/ahunt/git/git/builtin/checkout--worker.c:143:2
    #7 0x4a1e76 in run_builtin /home/ahunt/git/git/git.c:461:11
    #8 0x49e1e7 in handle_builtin /home/ahunt/git/git/git.c:714:3
    #9 0x4a0c08 in run_argv /home/ahunt/git/git/git.c:781:4
    #10 0x49d5a8 in cmd_main /home/ahunt/git/git/git.c:912:19
    #11 0x7974da in main /home/ahunt/git/git/common-main.c:52:11
    #12 0x7f8778114349 in __libc_start_main (/lib64/libc.so.6+0x24349)
    #13 0x421bd9 in _start /home/abuild/rpmbuild/BUILD/glibc-2.26/csu/../sysdeps/x86_64/start.S:120

  Uninitialized value was created by an allocation of 'res' in the stack frame of function 'report_result'
    #0 0x4f72c0 in report_result /home/ahunt/git/git/builtin/checkout--worker.c:55

SUMMARY: MemorySanitizer: use-of-uninitialized-value /home/ahunt/git/git/wrapper.c:256:8 in xwrite
Exiting
    #0 0xd5ac28 in xwrite /home/ahunt/git/git/wrapper.c:256:8
    #1 0xd5b327 in write_in_full /home/ahunt/git/git/wrapper.c:311:21
    #2 0xb0a8c4 in do_packet_write /home/ahunt/git/git/pkt-line.c:221:6
    #3 0xb0a5fd in packet_write /home/ahunt/git/git/pkt-line.c:242:6
    #4 0x4f7441 in report_result /home/ahunt/git/git/builtin/checkout--worker.c:69:2
    #5 0x4f6be6 in worker_loop /home/ahunt/git/git/builtin/checkout--worker.c:100:3
    #6 0x4f68d3 in cmd_checkout__worker /home/ahunt/git/git/builtin/checkout--worker.c:143:2
    #7 0x4a1e76 in run_builtin /home/ahunt/git/git/git.c:461:11
    #8 0x49e1e7 in handle_builtin /home/ahunt/git/git/git.c:714:3
    #9 0x4a0c08 in run_argv /home/ahunt/git/git/git.c:781:4
    #10 0x49d5a8 in cmd_main /home/ahunt/git/git/git.c:912:19
    #11 0x7974da in main /home/ahunt/git/git/common-main.c:52:11
    #12 0x7f2749a0e349 in __libc_start_main (/lib64/libc.so.6+0x24349)
    #13 0x421bd9 in _start /home/abuild/rpmbuild/BUILD/glibc-2.26/csu/../sysdeps/x86_64/start.S:120

  Uninitialized value was created by an allocation of 'res' in the stack frame of function 'report_result'
    #0 0x4f72c0 in report_result /home/ahunt/git/git/builtin/checkout--worker.c:55

SUMMARY: MemorySanitizer: use-of-uninitialized-value /home/ahunt/git/git/wrapper.c:256:8 in xwrite

Signed-off-by: Andrzej Hunt <andrzej@ahunt.org>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
derrickstolee pushed a commit that referenced this pull request Aug 10, 2021
origin starts off pointing to somewhere within line, which is owned by
the caller. Later we might allocate a new string using xmemdupz() or
xstrfmt(). To avoid leaking these new strings, we introduce a to_free
pointer - which allows us to safely free the newly allocated string when
we're done (we cannot just free origin directly as it might still be
pointing to line).

LSAN output from t0090:

Direct leak of 8 byte(s) in 1 object(s) allocated from:
    #0 0x49a82d in malloc ../projects/compiler-rt/lib/asan/asan_malloc_linux.cpp:145:3
    #1 0xa71f49 in do_xmalloc wrapper.c:41:8
    #2 0xa720b0 in do_xmallocz wrapper.c:75:8
    #3 0xa720b0 in xmallocz wrapper.c:83:9
    #4 0xa720b0 in xmemdupz wrapper.c:99:16
    #5 0x8092ba in handle_line fmt-merge-msg.c:187:23
    #6 0x8092ba in fmt_merge_msg fmt-merge-msg.c:666:7
    #7 0x5ce2e6 in prepare_merge_message builtin/merge.c:1119:2
    #8 0x5ce2e6 in collect_parents builtin/merge.c:1215:3
    #9 0x5c9c1e in cmd_merge builtin/merge.c:1454:16
    #10 0x4ce83e in run_builtin git.c:475:11
    #11 0x4ccafe in handle_builtin git.c:729:3
    #12 0x4cb01c in run_argv git.c:818:4
    #13 0x4cb01c in cmd_main git.c:949:19
    #14 0x6b3fad in main common-main.c:52:11
    #15 0x7fb929620349 in __libc_start_main (/lib64/libc.so.6+0x24349)

SUMMARY: AddressSanitizer: 8 byte(s) leaked in 1 allocation(s).

Signed-off-by: Andrzej Hunt <andrzej@ahunt.org>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
derrickstolee pushed a commit that referenced this pull request Aug 10, 2021
realpath is only populated if we execute the git_work_tree_initialized
block. However that block also causes us to return early, meaning we
never actually release the strbuf in the case where we populated it.
Therefore we move all strbuf related code into the block to guarantee
that we can't leak it.

LSAN output from t0095:

Direct leak of 129 byte(s) in 1 object(s) allocated from:
    #0 0x49a9b9 in realloc ../projects/compiler-rt/lib/asan/asan_malloc_linux.cpp:164:3
    #1 0x78f585 in xrealloc wrapper.c:126:8
    #2 0x713ff4 in strbuf_grow strbuf.c:98:2
    #3 0x713ff4 in strbuf_getcwd strbuf.c:597:3
    #4 0x4f0c18 in strbuf_realpath_1 abspath.c:99:7
    #5 0x5ae4a4 in set_git_work_tree environment.c:259:3
    #6 0x6fdd8a in setup_discovered_git_dir setup.c:931:2
    #7 0x6fdd8a in setup_git_directory_gently setup.c:1235:12
    #8 0x4cb50d in get_bloom_filter_for_commit t/helper/test-bloom.c:41:2
    #9 0x4cb50d in cmd__bloom t/helper/test-bloom.c:95:3
    #10 0x4caa1f in cmd_main t/helper/test-tool.c:124:11
    #11 0x4caded in main common-main.c:52:11
    #12 0x7f0869f02349 in __libc_start_main (/lib64/libc.so.6+0x24349)

SUMMARY: AddressSanitizer: 129 byte(s) leaked in 1 allocation(s).

It looks like this leak has existed since realpath was first added to
set_git_work_tree() in:
  3d7747e (real_path: remove unsafe API, 2020-03-10)

Signed-off-by: Andrzej Hunt <andrzej@ahunt.org>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
derrickstolee pushed a commit that referenced this pull request Aug 10, 2021
relative_url() populates sb. In the normal return path, its buffer is
detached using strbuf_detach(). However the early return path does
nothing with sb, which means that sb's memory is leaked - therefore
we add a release to avoid this leak.

The reset is also only necessary for the normal return path, hence we
move it down to after the early-return to avoid unnecessary work.

LSAN output from t0060:

Direct leak of 121 byte(s) in 1 object(s) allocated from:
    #0 0x7f31246f28b0 in realloc (/usr/lib64/libasan.so.4+0xdc8b0)
    #1 0x98d7d6 in xrealloc wrapper.c:126
    #2 0x909a60 in strbuf_grow strbuf.c:98
    #3 0x90bf00 in strbuf_vaddf strbuf.c:401
    #4 0x90c321 in strbuf_addf strbuf.c:335
    #5 0x5cb78d in relative_url builtin/submodule--helper.c:182
    #6 0x5cbe46 in resolve_relative_url_test builtin/submodule--helper.c:248
    #7 0x410dcd in run_builtin git.c:475
    #8 0x410dcd in handle_builtin git.c:729
    #9 0x414087 in run_argv git.c:818
    #10 0x414087 in cmd_main git.c:949
    #11 0x40e9ec in main common-main.c:52
    #12 0x7f3123c41349 in __libc_start_main (/lib64/libc.so.6+0x24349)

SUMMARY: AddressSanitizer: 121 byte(s) leaked in 1 allocation(s).

Signed-off-by: Andrzej Hunt <andrzej@ahunt.org>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
derrickstolee pushed a commit that referenced this pull request Aug 10, 2021
cmd_for_each_repo() copies argv into args (a strvec), which is later
passed into run_command_on_repo(), which in turn copies that strvec onto
the end of child.args. The initial copy is unnecessary (we never modify
args). We therefore choose to just pass argv directly into
run_command_on_repo(), which lets us avoid the copy and fixes the leak.

LSAN output from t0068:

Direct leak of 192 byte(s) in 1 object(s) allocated from:
    #0 0x7f63bd4ab8b0 in realloc (/usr/lib64/libasan.so.4+0xdc8b0)
    #1 0x98d7e6 in xrealloc wrapper.c:126
    #2 0x916914 in strvec_push_nodup strvec.c:19
    #3 0x916a6e in strvec_push strvec.c:26
    #4 0x4be4eb in cmd_for_each_repo builtin/for-each-repo.c:49
    #5 0x410dcd in run_builtin git.c:475
    #6 0x410dcd in handle_builtin git.c:729
    #7 0x414087 in run_argv git.c:818
    #8 0x414087 in cmd_main git.c:949
    #9 0x40e9ec in main common-main.c:52
    #10 0x7f63bc9fa349 in __libc_start_main (/lib64/libc.so.6+0x24349)

Indirect leak of 22 byte(s) in 2 object(s) allocated from:
    #0 0x7f63bd445e30 in __interceptor_strdup (/usr/lib64/libasan.so.4+0x76e30)
    #1 0x98d698 in xstrdup wrapper.c:29
    #2 0x916a63 in strvec_push strvec.c:26
    #3 0x4be4eb in cmd_for_each_repo builtin/for-each-repo.c:49
    #4 0x410dcd in run_builtin git.c:475
    #5 0x410dcd in handle_builtin git.c:729
    #6 0x414087 in run_argv git.c:818
    #7 0x414087 in cmd_main git.c:949
    #8 0x40e9ec in main common-main.c:52
    #9 0x7f63bc9fa349 in __libc_start_main (/lib64/libc.so.6+0x24349)

See also discussion about the original implementation below - this code
appears to have evolved from a callback explaining the double-strvec-copy
pattern, but there's no strong reason to keep that now:
  https://lore.kernel.org/git/68bbeca5-314b-08ee-ef36-040e3f3814e9@gmail.com/

Signed-off-by: Andrzej Hunt <andrzej@ahunt.org>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
derrickstolee pushed a commit that referenced this pull request Aug 10, 2021
old_dir/new_dir are free()'d at the end of update_dir_rename_counts,
however if we return early we'll never free those strings. Therefore
we should move all new allocations after the possible early return,
avoiding a leak.

This seems like a fairly recent leak, that started happening since the
early-return was added in:
  1ad69eb (diffcore-rename: compute dir_rename_counts in stages, 2021-02-27)

LSAN output from t0022:

Direct leak of 7 byte(s) in 1 object(s) allocated from:
    #0 0x486804 in strdup ../projects/compiler-rt/lib/asan/asan_interceptors.cpp:452:3
    #1 0xa71e48 in xstrdup wrapper.c:29:14
    #2 0x7db9c7 in update_dir_rename_counts diffcore-rename.c:464:12
    #3 0x7db6ae in find_renames diffcore-rename.c:1062:3
    #4 0x7d76c3 in diffcore_rename_extended diffcore-rename.c:1472:18
    #5 0x7b4cfc in diffcore_std diff.c:6705:4
    #6 0x855e46 in log_tree_diff_flush log-tree.c:846:2
    #7 0x856574 in log_tree_diff log-tree.c:955:3
    #8 0x856574 in log_tree_commit log-tree.c:986:10
    #9 0x9a9c67 in print_commit_summary sequencer.c:1329:7
    #10 0x52e623 in cmd_commit builtin/commit.c:1862:3
    #11 0x4ce83e in run_builtin git.c:475:11
    #12 0x4ccafe in handle_builtin git.c:729:3
    #13 0x4cb01c in run_argv git.c:818:4
    #14 0x4cb01c in cmd_main git.c:949:19
    #15 0x6b3f3d in main common-main.c:52:11
    #16 0x7fe397c7a349 in __libc_start_main (/lib64/libc.so.6+0x24349)

Direct leak of 7 byte(s) in 1 object(s) allocated from:
    #0 0x486804 in strdup ../projects/compiler-rt/lib/asan/asan_interceptors.cpp:452:3
    #1 0xa71e48 in xstrdup wrapper.c:29:14
    #2 0x7db9bc in update_dir_rename_counts diffcore-rename.c:463:12
    #3 0x7db6ae in find_renames diffcore-rename.c:1062:3
    #4 0x7d76c3 in diffcore_rename_extended diffcore-rename.c:1472:18
    #5 0x7b4cfc in diffcore_std diff.c:6705:4
    #6 0x855e46 in log_tree_diff_flush log-tree.c:846:2
    #7 0x856574 in log_tree_diff log-tree.c:955:3
    #8 0x856574 in log_tree_commit log-tree.c:986:10
    #9 0x9a9c67 in print_commit_summary sequencer.c:1329:7
    #10 0x52e623 in cmd_commit builtin/commit.c:1862:3
    #11 0x4ce83e in run_builtin git.c:475:11
    #12 0x4ccafe in handle_builtin git.c:729:3
    #13 0x4cb01c in run_argv git.c:818:4
    #14 0x4cb01c in cmd_main git.c:949:19
    #15 0x6b3f3d in main common-main.c:52:11
    #16 0x7fe397c7a349 in __libc_start_main (/lib64/libc.so.6+0x24349)

SUMMARY: AddressSanitizer: 14 byte(s) leaked in 2 allocation(s).

Signed-off-by: Andrzej Hunt <andrzej@ahunt.org>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
derrickstolee pushed a commit that referenced this pull request Aug 10, 2021
u.head is populated using resolve_refdup(), which returns a newly
allocated string - hence we also need to free() it.

Found while running t0041 with LSAN:

Direct leak of 16 byte(s) in 1 object(s) allocated from:
    #0 0x486804 in strdup ../projects/compiler-rt/lib/asan/asan_interceptors.cpp:452:3
    #1 0xa8be98 in xstrdup wrapper.c:29:14
    #2 0x9481db in head_atom_parser ref-filter.c:549:17
    #3 0x9408c7 in parse_ref_filter_atom ref-filter.c:703:30
    #4 0x9400e3 in verify_ref_format ref-filter.c:974:8
    #5 0x4f9e8b in print_ref_list builtin/branch.c:439:6
    #6 0x4f9e8b in cmd_branch builtin/branch.c:757:3
    #7 0x4ce83e in run_builtin git.c:475:11
    #8 0x4ccafe in handle_builtin git.c:729:3
    #9 0x4cb01c in run_argv git.c:818:4
    #10 0x4cb01c in cmd_main git.c:949:19
    #11 0x6bdc2d in main common-main.c:52:11
    #12 0x7f96edf86349 in __libc_start_main (/lib64/libc.so.6+0x24349)

SUMMARY: AddressSanitizer: 16 byte(s) leaked in 1 allocation(s).

Signed-off-by: Andrzej Hunt <andrzej@ahunt.org>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
derrickstolee pushed a commit that referenced this pull request Aug 10, 2021
repo_diff_setup() calls through to diff.c's static prep_parse_options(),
which in  turn allocates a new array into diff_opts.parseopts.
diff_setup_done() is responsible for freeing that array, and has the
benefit of verifying diff_opts too - hence we add a call to
diff_setup_done() to avoid leaking parseopts.

Output from the leak as found while running t0090 with LSAN:

Direct leak of 7120 byte(s) in 1 object(s) allocated from:
    #0 0x49a82d in malloc ../projects/compiler-rt/lib/asan/asan_malloc_linux.cpp:145:3
    #1 0xa8bf89 in do_xmalloc wrapper.c:41:8
    #2 0x7a7bae in prep_parse_options diff.c:5636:2
    #3 0x7a7bae in repo_diff_setup diff.c:4611:2
    #4 0x93716c in repo_index_has_changes read-cache.c:2518:3
    #5 0x872233 in unclean merge-ort-wrappers.c:12:14
    #6 0x872233 in merge_ort_recursive merge-ort-wrappers.c:53:6
    #7 0x5d5b11 in try_merge_strategy builtin/merge.c:752:12
    #8 0x5d0b6b in cmd_merge builtin/merge.c:1666:9
    #9 0x4ce83e in run_builtin git.c:475:11
    #10 0x4ccafe in handle_builtin git.c:729:3
    #11 0x4cb01c in run_argv git.c:818:4
    #12 0x4cb01c in cmd_main git.c:949:19
    #13 0x6bdc2d in main common-main.c:52:11
    #14 0x7f551eb51349 in __libc_start_main (/lib64/libc.so.6+0x24349)

SUMMARY: AddressSanitizer: 7120 byte(s) leaked in 1 allocation(s)

Signed-off-by: Andrzej Hunt <andrzej@ahunt.org>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
derrickstolee pushed a commit that referenced this pull request Aug 10, 2021
apply_multi_file_filter and async_query_available_blobs both query
subprocess output using subprocess_read_status, which writes data into
the identically named filter_status strbuf. We add a strbuf_release to
avoid leaking their contents.

Leak output seen when running t0021 with LSAN:

Direct leak of 24 byte(s) in 1 object(s) allocated from:
    #0 0x49ab49 in realloc ../projects/compiler-rt/lib/asan/asan_malloc_linux.cpp:164:3
    #1 0xa8c2b5 in xrealloc wrapper.c:126:8
    #2 0x9ff99d in strbuf_grow strbuf.c:98:2
    #3 0x9ff99d in strbuf_addbuf strbuf.c:304:2
    #4 0xa101d6 in subprocess_read_status sub-process.c:45:5
    #5 0x77793c in apply_multi_file_filter convert.c:886:8
    #6 0x77793c in apply_filter convert.c:1042:10
    #7 0x77a0b5 in convert_to_git_filter_fd convert.c:1492:7
    #8 0x8b48cd in index_stream_convert_blob object-file.c:2156:2
    #9 0x8b48cd in index_fd object-file.c:2248:9
    #10 0x597411 in hash_fd builtin/hash-object.c:43:9
    #11 0x596be1 in hash_object builtin/hash-object.c:59:2
    #12 0x596be1 in cmd_hash_object builtin/hash-object.c:153:3
    #13 0x4ce83e in run_builtin git.c:475:11
    #14 0x4ccafe in handle_builtin git.c:729:3
    #15 0x4cb01c in run_argv git.c:818:4
    #16 0x4cb01c in cmd_main git.c:949:19
    #17 0x6bdc2d in main common-main.c:52:11
    #18 0x7f42acf79349 in __libc_start_main (/lib64/libc.so.6+0x24349)

SUMMARY: AddressSanitizer: 24 byte(s) leaked in 1 allocation(s).

Direct leak of 120 byte(s) in 5 object(s) allocated from:
    #0 0x49ab49 in realloc ../projects/compiler-rt/lib/asan/asan_malloc_linux.cpp:164:3
    #1 0xa8c295 in xrealloc wrapper.c:126:8
    #2 0x9ff97d in strbuf_grow strbuf.c:98:2
    #3 0x9ff97d in strbuf_addbuf strbuf.c:304:2
    #4 0xa101b6 in subprocess_read_status sub-process.c:45:5
    #5 0x775c73 in async_query_available_blobs convert.c:960:8
    #6 0x80029d in finish_delayed_checkout entry.c:183:9
    #7 0xa65d1e in check_updates unpack-trees.c:493:10
    #8 0xa5f469 in unpack_trees unpack-trees.c:1747:8
    #9 0x525971 in checkout builtin/clone.c:815:6
    #10 0x525971 in cmd_clone builtin/clone.c:1409:8
    #11 0x4ce83e in run_builtin git.c:475:11
    #12 0x4ccafe in handle_builtin git.c:729:3
    #13 0x4cb01c in run_argv git.c:818:4
    #14 0x4cb01c in cmd_main git.c:949:19
    #15 0x6bdc2d in main common-main.c:52:11
    #16 0x7fa253fce349 in __libc_start_main (/lib64/libc.so.6+0x24349)

SUMMARY: AddressSanitizer: 120 byte(s) leaked in 5 allocation(s).

Signed-off-by: Andrzej Hunt <andrzej@ahunt.org>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
derrickstolee pushed a commit that referenced this pull request Aug 10, 2021
These leaks all happen at the end of cmd_mv, hence don't matter in any
way. But we still fix the easy ones and squash the rest to get us closer
to being able to run tests without leaks.

LSAN output from t0050:

Direct leak of 384 byte(s) in 1 object(s) allocated from:
    #0 0x49ab49 in realloc ../projects/compiler-rt/lib/asan/asan_malloc_linux.cpp:164:3
    #1 0xa8c015 in xrealloc wrapper.c:126:8
    #2 0xa0a7e1 in add_entry string-list.c:44:2
    #3 0xa0a7e1 in string_list_insert string-list.c:58:14
    #4 0x5dac03 in cmd_mv builtin/mv.c:248:4
    #5 0x4ce83e in run_builtin git.c:475:11
    #6 0x4ccafe in handle_builtin git.c:729:3
    #7 0x4cb01c in run_argv git.c:818:4
    #8 0x4cb01c in cmd_main git.c:949:19
    #9 0x6bd9ad in main common-main.c:52:11
    #10 0x7fbfeffc4349 in __libc_start_main (/lib64/libc.so.6+0x24349)

Direct leak of 16 byte(s) in 1 object(s) allocated from:
    #0 0x49a82d in malloc ../projects/compiler-rt/lib/asan/asan_malloc_linux.cpp:145:3
    #1 0xa8bd09 in do_xmalloc wrapper.c:41:8
    #2 0x5dbc34 in internal_prefix_pathspec builtin/mv.c:32:2
    #3 0x5da575 in cmd_mv builtin/mv.c:158:14
    #4 0x4ce83e in run_builtin git.c:475:11
    #5 0x4ccafe in handle_builtin git.c:729:3
    #6 0x4cb01c in run_argv git.c:818:4
    #7 0x4cb01c in cmd_main git.c:949:19
    #8 0x6bd9ad in main common-main.c:52:11
    #9 0x7fbfeffc4349 in __libc_start_main (/lib64/libc.so.6+0x24349)

Direct leak of 16 byte(s) in 1 object(s) allocated from:
    #0 0x49a82d in malloc ../projects/compiler-rt/lib/asan/asan_malloc_linux.cpp:145:3
    #1 0xa8bd09 in do_xmalloc wrapper.c:41:8
    #2 0x5dbc34 in internal_prefix_pathspec builtin/mv.c:32:2
    #3 0x5da4e4 in cmd_mv builtin/mv.c:148:11
    #4 0x4ce83e in run_builtin git.c:475:11
    #5 0x4ccafe in handle_builtin git.c:729:3
    #6 0x4cb01c in run_argv git.c:818:4
    #7 0x4cb01c in cmd_main git.c:949:19
    #8 0x6bd9ad in main common-main.c:52:11
    #9 0x7fbfeffc4349 in __libc_start_main (/lib64/libc.so.6+0x24349)

Direct leak of 8 byte(s) in 1 object(s) allocated from:
    #0 0x49a9a2 in calloc ../projects/compiler-rt/lib/asan/asan_malloc_linux.cpp:154:3
    #1 0xa8c119 in xcalloc wrapper.c:140:8
    #2 0x5da585 in cmd_mv builtin/mv.c:159:22
    #3 0x4ce83e in run_builtin git.c:475:11
    #4 0x4ccafe in handle_builtin git.c:729:3
    #5 0x4cb01c in run_argv git.c:818:4
    #6 0x4cb01c in cmd_main git.c:949:19
    #7 0x6bd9ad in main common-main.c:52:11
    #8 0x7fbfeffc4349 in __libc_start_main (/lib64/libc.so.6+0x24349)

Direct leak of 4 byte(s) in 1 object(s) allocated from:
    #0 0x49a9a2 in calloc ../projects/compiler-rt/lib/asan/asan_malloc_linux.cpp:154:3
    #1 0xa8c119 in xcalloc wrapper.c:140:8
    #2 0x5da4f8 in cmd_mv builtin/mv.c:149:10
    #3 0x4ce83e in run_builtin git.c:475:11
    #4 0x4ccafe in handle_builtin git.c:729:3
    #5 0x4cb01c in run_argv git.c:818:4
    #6 0x4cb01c in cmd_main git.c:949:19
    #7 0x6bd9ad in main common-main.c:52:11
    #8 0x7fbfeffc4349 in __libc_start_main (/lib64/libc.so.6+0x24349)

Indirect leak of 65 byte(s) in 1 object(s) allocated from:
    #0 0x49ab49 in realloc ../projects/compiler-rt/lib/asan/asan_malloc_linux.cpp:164:3
    #1 0xa8c015 in xrealloc wrapper.c:126:8
    #2 0xa00226 in strbuf_grow strbuf.c:98:2
    #3 0xa00226 in strbuf_vaddf strbuf.c:394:3
    #4 0xa065c7 in xstrvfmt strbuf.c:981:2
    #5 0xa065c7 in xstrfmt strbuf.c:991:8
    #6 0x9e7ce7 in prefix_path_gently setup.c:115:15
    #7 0x9e7fa6 in prefix_path setup.c:128:12
    #8 0x5dbdbf in internal_prefix_pathspec builtin/mv.c:55:23
    #9 0x5da575 in cmd_mv builtin/mv.c:158:14
    #10 0x4ce83e in run_builtin git.c:475:11
    #11 0x4ccafe in handle_builtin git.c:729:3
    #12 0x4cb01c in run_argv git.c:818:4
    #13 0x4cb01c in cmd_main git.c:949:19
    #14 0x6bd9ad in main common-main.c:52:11
    #15 0x7fbfeffc4349 in __libc_start_main (/lib64/libc.so.6+0x24349)

Indirect leak of 65 byte(s) in 1 object(s) allocated from:
    #0 0x49ab49 in realloc ../projects/compiler-rt/lib/asan/asan_malloc_linux.cpp:164:3
    #1 0xa8c015 in xrealloc wrapper.c:126:8
    #2 0xa00226 in strbuf_grow strbuf.c:98:2
    #3 0xa00226 in strbuf_vaddf strbuf.c:394:3
    #4 0xa065c7 in xstrvfmt strbuf.c:981:2
    #5 0xa065c7 in xstrfmt strbuf.c:991:8
    #6 0x9e7ce7 in prefix_path_gently setup.c:115:15
    #7 0x9e7fa6 in prefix_path setup.c:128:12
    #8 0x5dbdbf in internal_prefix_pathspec builtin/mv.c:55:23
    #9 0x5da4e4 in cmd_mv builtin/mv.c:148:11
    #10 0x4ce83e in run_builtin git.c:475:11
    #11 0x4ccafe in handle_builtin git.c:729:3
    #12 0x4cb01c in run_argv git.c:818:4
    #13 0x4cb01c in cmd_main git.c:949:19
    #14 0x6bd9ad in main common-main.c:52:11
    #15 0x7fbfeffc4349 in __libc_start_main (/lib64/libc.so.6+0x24349)

SUMMARY: AddressSanitizer: 558 byte(s) leaked in 7 allocation(s).

Signed-off-by: Andrzej Hunt <andrzej@ahunt.org>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
derrickstolee pushed a commit that referenced this pull request Aug 10, 2021
merge_name() calls dwim_ref(), which allocates a new string into
found_ref. Therefore add a free() to avoid leaking found_ref.

LSAN output from t0021:

Direct leak of 16 byte(s) in 1 object(s) allocated from:
    #0 0x486804 in strdup ../projects/compiler-rt/lib/asan/asan_interceptors.cpp:452:3
    #1 0xa8beb8 in xstrdup wrapper.c:29:14
    #2 0x954054 in expand_ref refs.c:671:12
    #3 0x953cb6 in repo_dwim_ref refs.c:644:22
    #4 0x5d3759 in dwim_ref refs.h:162:9
    #5 0x5d3759 in merge_name builtin/merge.c:517:6
    #6 0x5d3759 in collect_parents builtin/merge.c:1214:5
    #7 0x5cf60d in cmd_merge builtin/merge.c:1458:16
    #8 0x4ce83e in run_builtin git.c:475:11
    #9 0x4ccafe in handle_builtin git.c:729:3
    #10 0x4cb01c in run_argv git.c:818:4
    #11 0x4cb01c in cmd_main git.c:949:19
    #12 0x6bdbfd in main common-main.c:52:11
    #13 0x7f0430502349 in __libc_start_main (/lib64/libc.so.6+0x24349)

SUMMARY: AddressSanitizer: 16 byte(s) leaked in 1 allocation(s).

Signed-off-by: Andrzej Hunt <andrzej@ahunt.org>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
derrickstolee pushed a commit that referenced this pull request Aug 10, 2021
- cmd_rebase populates rebase_options.strategy with newly allocated
  strings, hence we need to free those strings at the end of cmd_rebase
  to avoid a leak.
- In some cases: get_replay_opts() is called, which prepares replay_opts
  using data from rebase_options. We used to simply copy the pointer
  from rebase_options.strategy,  however that would now result in a
  double-free because sequencer_remove_state() is eventually used to
  free replay_opts.strategy. To avoid this we xstrdup() strategy when
  adding it to replay_opts.

The original leak happens because we always populate
rebase_options.strategy, but we don't always enter the path that calls
get_replay_opts() and later sequencer_remove_state() - in  other words
we'd always allocate a new string into rebase_options.strategy but
only sometimes did we free it. We now make sure that rebase_options
and replay_opts both own their own copies of strategy, and each copy
is free'd independently.

This was first seen when running t0021 with LSAN, but t2012 helped catch
the fact that we can't just free(options.strategy) at the end of
cmd_rebase (as that can cause a double-free). LSAN output from t0021:

LSAN output from t0021:

Direct leak of 4 byte(s) in 1 object(s) allocated from:
    #0 0x486804 in strdup ../projects/compiler-rt/lib/asan/asan_interceptors.cpp:452:3
    #1 0xa71eb8 in xstrdup wrapper.c:29:14
    #2 0x61b1cc in cmd_rebase builtin/rebase.c:1779:22
    #3 0x4ce83e in run_builtin git.c:475:11
    #4 0x4ccafe in handle_builtin git.c:729:3
    #5 0x4cb01c in run_argv git.c:818:4
    #6 0x4cb01c in cmd_main git.c:949:19
    #7 0x6b3fad in main common-main.c:52:11
    #8 0x7f267b512349 in __libc_start_main (/lib64/libc.so.6+0x24349)

SUMMARY: AddressSanitizer: 4 byte(s) leaked in 1 allocation(s).

Signed-off-by: Andrzej Hunt <andrzej@ahunt.org>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
derrickstolee pushed a commit that referenced this pull request Aug 10, 2021
setup_unpack_trees_porcelain() populates various fields on
unpack_tree_opts, we need to call clear_unpack_trees_porcelain() to
avoid leaking them. Specifically, we used to leak
unpack_tree_opts.msgs_to_free.

We have to do this in leave_reset_head because there are multiple
scenarios where unpack_tree_opts has already been configured, followed
by a 'goto leave_reset_head'. But we can also 'goto leave_reset_head'
prior to having initialised unpack_tree_opts via memset(..., 0, ...).
Therefore we also move unpack_tree_opts initialisation to the start of
reset_head(), and convert it to use brace initialisation - which
guarantees that we can never clear an uninitialised unpack_tree_opts.
clear_unpack_tree_opts() is always safe to call as long as
unpack_tree_opts is at least zero-initialised, i.e. it does not depend
on a previous call to setup_unpack_trees_porcelain().

LSAN output from t0021:

Direct leak of 192 byte(s) in 1 object(s) allocated from:
    #0 0x49ab49 in realloc ../projects/compiler-rt/lib/asan/asan_malloc_linux.cpp:164:3
    #1 0xa721e5 in xrealloc wrapper.c:126:8
    #2 0x9f7861 in strvec_push_nodup strvec.c:19:2
    #3 0x9f7861 in strvec_pushf strvec.c:39:2
    #4 0xa43e14 in setup_unpack_trees_porcelain unpack-trees.c:129:3
    #5 0x97e011 in reset_head reset.c:53:2
    #6 0x61dfa5 in cmd_rebase builtin/rebase.c:1991:9
    #7 0x4ce83e in run_builtin git.c:475:11
    #8 0x4ccafe in handle_builtin git.c:729:3
    #9 0x4cb01c in run_argv git.c:818:4
    #10 0x4cb01c in cmd_main git.c:949:19
    #11 0x6b3f3d in main common-main.c:52:11
    #12 0x7fa8addf3349 in __libc_start_main (/lib64/libc.so.6+0x24349)

Indirect leak of 147 byte(s) in 1 object(s) allocated from:
    #0 0x49ab49 in realloc ../projects/compiler-rt/lib/asan/asan_malloc_linux.cpp:164:3
    #1 0xa721e5 in xrealloc wrapper.c:126:8
    #2 0x9e8d54 in strbuf_grow strbuf.c:98:2
    #3 0x9e8d54 in strbuf_vaddf strbuf.c:401:3
    #4 0x9f7774 in strvec_pushf strvec.c:36:2
    #5 0xa43e14 in setup_unpack_trees_porcelain unpack-trees.c:129:3
    #6 0x97e011 in reset_head reset.c:53:2
    #7 0x61dfa5 in cmd_rebase builtin/rebase.c:1991:9
    #8 0x4ce83e in run_builtin git.c:475:11
    #9 0x4ccafe in handle_builtin git.c:729:3
    #10 0x4cb01c in run_argv git.c:818:4
    #11 0x4cb01c in cmd_main git.c:949:19
    #12 0x6b3f3d in main common-main.c:52:11
    #13 0x7fa8addf3349 in __libc_start_main (/lib64/libc.so.6+0x24349)

Indirect leak of 134 byte(s) in 1 object(s) allocated from:
    #0 0x49ab49 in realloc ../projects/compiler-rt/lib/asan/asan_malloc_linux.cpp:164:3
    #1 0xa721e5 in xrealloc wrapper.c:126:8
    #2 0x9e8d54 in strbuf_grow strbuf.c:98:2
    #3 0x9e8d54 in strbuf_vaddf strbuf.c:401:3
    #4 0x9f7774 in strvec_pushf strvec.c:36:2
    #5 0xa43fe4 in setup_unpack_trees_porcelain unpack-trees.c:168:3
    #6 0x97e011 in reset_head reset.c:53:2
    #7 0x61dfa5 in cmd_rebase builtin/rebase.c:1991:9
    #8 0x4ce83e in run_builtin git.c:475:11
    #9 0x4ccafe in handle_builtin git.c:729:3
    #10 0x4cb01c in run_argv git.c:818:4
    #11 0x4cb01c in cmd_main git.c:949:19
    #12 0x6b3f3d in main common-main.c:52:11
    #13 0x7fa8addf3349 in __libc_start_main (/lib64/libc.so.6+0x24349)

Indirect leak of 130 byte(s) in 1 object(s) allocated from:
    #0 0x49ab49 in realloc ../projects/compiler-rt/lib/asan/asan_malloc_linux.cpp:164:3
    #1 0xa721e5 in xrealloc wrapper.c:126:8
    #2 0x9e8d54 in strbuf_grow strbuf.c:98:2
    #3 0x9e8d54 in strbuf_vaddf strbuf.c:401:3
    #4 0x9f7774 in strvec_pushf strvec.c:36:2
    #5 0xa43f20 in setup_unpack_trees_porcelain unpack-trees.c:150:3
    #6 0x97e011 in reset_head reset.c:53:2
    #7 0x61dfa5 in cmd_rebase builtin/rebase.c:1991:9
    #8 0x4ce83e in run_builtin git.c:475:11
    #9 0x4ccafe in handle_builtin git.c:729:3
    #10 0x4cb01c in run_argv git.c:818:4
    #11 0x4cb01c in cmd_main git.c:949:19
    #12 0x6b3f3d in main common-main.c:52:11
    #13 0x7fa8addf3349 in __libc_start_main (/lib64/libc.so.6+0x24349)

SUMMARY: AddressSanitizer: 603 byte(s) leaked in 4 allocation(s).

Signed-off-by: Andrzej Hunt <andrzej@ahunt.org>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
derrickstolee pushed a commit that referenced this pull request Oct 7, 2021
In a sparse index it is possible for the tree that is being verified
to be freed while it is being verified. This happens when the index is
sparse but the cache tree is not and index_name_pos() looks up a path
from the cache tree that is a descendant of a sparse index entry. That
triggers a call to ensure_full_index() which frees the cache tree that
is being verified.  Carrying on trying to verify the tree after this
results in a use-after-free bug. Instead restart the verification if a
sparse index is converted to a full index. This bug is triggered by a
call to reset_head() in "git rebase --apply". Thanks to René Scharfe
and Derick Stolee for their help analyzing the problem.

==74345==ERROR: AddressSanitizer: heap-use-after-free on address 0x606000001b20 at pc 0x557cbe82d3a2 bp 0x7ffdfee08090 sp 0x7ffdfee08080
READ of size 4 at 0x606000001b20 thread T0
    #0 0x557cbe82d3a1 in verify_one /home/phil/src/git/cache-tree.c:863
    #1 0x557cbe82ca9d in verify_one /home/phil/src/git/cache-tree.c:840
    #2 0x557cbe82ca9d in verify_one /home/phil/src/git/cache-tree.c:840
    #3 0x557cbe82ca9d in verify_one /home/phil/src/git/cache-tree.c:840
    #4 0x557cbe830a2b in cache_tree_verify /home/phil/src/git/cache-tree.c:910
    #5 0x557cbea53741 in write_locked_index /home/phil/src/git/read-cache.c:3250
    #6 0x557cbeab7fdd in reset_head /home/phil/src/git/reset.c:87
    #7 0x557cbe72147f in cmd_rebase builtin/rebase.c:2074
    #8 0x557cbe5bd151 in run_builtin /home/phil/src/git/git.c:461
    #9 0x557cbe5bd151 in handle_builtin /home/phil/src/git/git.c:714
    #10 0x557cbe5c0503 in run_argv /home/phil/src/git/git.c:781
    #11 0x557cbe5c0503 in cmd_main /home/phil/src/git/git.c:912
    #12 0x557cbe5bad28 in main /home/phil/src/git/common-main.c:52
    #13 0x7fdd4b82eb24 in __libc_start_main (/usr/lib/libc.so.6+0x27b24)
    #14 0x557cbe5bcb8d in _start (/home/phil/src/git/git+0x1b9b8d)

0x606000001b20 is located 0 bytes inside of 56-byte region [0x606000001b20,0x606000001b58)
freed by thread T0 here:
    #0 0x7fdd4bacff19 in __interceptor_free /build/gcc/src/gcc/libsanitizer/asan/asan_malloc_linux.cpp:127
    #1 0x557cbe82af60 in cache_tree_free /home/phil/src/git/cache-tree.c:35
    #2 0x557cbe82aee5 in cache_tree_free /home/phil/src/git/cache-tree.c:31
    #3 0x557cbe82aee5 in cache_tree_free /home/phil/src/git/cache-tree.c:31
    #4 0x557cbe82aee5 in cache_tree_free /home/phil/src/git/cache-tree.c:31
    #5 0x557cbeb2557a in ensure_full_index /home/phil/src/git/sparse-index.c:310
    #6 0x557cbea45c4a in index_name_stage_pos /home/phil/src/git/read-cache.c:588
    #7 0x557cbe82ce37 in verify_one /home/phil/src/git/cache-tree.c:850
    #8 0x557cbe82ca9d in verify_one /home/phil/src/git/cache-tree.c:840
    #9 0x557cbe82ca9d in verify_one /home/phil/src/git/cache-tree.c:840
    #10 0x557cbe82ca9d in verify_one /home/phil/src/git/cache-tree.c:840
    #11 0x557cbe830a2b in cache_tree_verify /home/phil/src/git/cache-tree.c:910
    #12 0x557cbea53741 in write_locked_index /home/phil/src/git/read-cache.c:3250
    #13 0x557cbeab7fdd in reset_head /home/phil/src/git/reset.c:87
    #14 0x557cbe72147f in cmd_rebase builtin/rebase.c:2074
    #15 0x557cbe5bd151 in run_builtin /home/phil/src/git/git.c:461
    #16 0x557cbe5bd151 in handle_builtin /home/phil/src/git/git.c:714
    #17 0x557cbe5c0503 in run_argv /home/phil/src/git/git.c:781
    #18 0x557cbe5c0503 in cmd_main /home/phil/src/git/git.c:912
    #19 0x557cbe5bad28 in main /home/phil/src/git/common-main.c:52
    #20 0x7fdd4b82eb24 in __libc_start_main (/usr/lib/libc.so.6+0x27b24)

previously allocated by thread T0 here:
    #0 0x7fdd4bad0459 in __interceptor_calloc /build/gcc/src/gcc/libsanitizer/asan/asan_malloc_linux.cpp:154
    #1 0x557cbebc1807 in xcalloc /home/phil/src/git/wrapper.c:140
    #2 0x557cbe82b7d8 in cache_tree /home/phil/src/git/cache-tree.c:17
    #3 0x557cbe82b7d8 in prime_cache_tree_rec /home/phil/src/git/cache-tree.c:763
    #4 0x557cbe82b837 in prime_cache_tree_rec /home/phil/src/git/cache-tree.c:764
    #5 0x557cbe82b837 in prime_cache_tree_rec /home/phil/src/git/cache-tree.c:764
    #6 0x557cbe8304e1 in prime_cache_tree /home/phil/src/git/cache-tree.c:779
    #7 0x557cbeab7fa7 in reset_head /home/phil/src/git/reset.c:85
    #8 0x557cbe72147f in cmd_rebase builtin/rebase.c:2074
    #9 0x557cbe5bd151 in run_builtin /home/phil/src/git/git.c:461
    #10 0x557cbe5bd151 in handle_builtin /home/phil/src/git/git.c:714
    #11 0x557cbe5c0503 in run_argv /home/phil/src/git/git.c:781
    #12 0x557cbe5c0503 in cmd_main /home/phil/src/git/git.c:912
    #13 0x557cbe5bad28 in main /home/phil/src/git/common-main.c:52
    #14 0x7fdd4b82eb24 in __libc_start_main (/usr/lib/libc.so.6+0x27b24)

Signed-off-by: Phillip Wood <phillip.wood@dunelm.org.uk>
Signed-off-by: Derrick Stolee <dstolee@microsoft.com>
derrickstolee pushed a commit that referenced this pull request Oct 7, 2021
In a sparse index it is possible for the tree that is being verified
to be freed while it is being verified. This happens when the index is
sparse but the cache tree is not and index_name_pos() looks up a path
from the cache tree that is a descendant of a sparse index entry. That
triggers a call to ensure_full_index() which frees the cache tree that
is being verified.  Carrying on trying to verify the tree after this
results in a use-after-free bug. Instead restart the verification if a
sparse index is converted to a full index. This bug is triggered by a
call to reset_head() in "git rebase --apply". Thanks to René Scharfe
and Derrick Stolee for their help analyzing the problem.

==74345==ERROR: AddressSanitizer: heap-use-after-free on address 0x606000001b20 at pc 0x557cbe82d3a2 bp 0x7ffdfee08090 sp 0x7ffdfee08080
READ of size 4 at 0x606000001b20 thread T0
    #0 0x557cbe82d3a1 in verify_one /home/phil/src/git/cache-tree.c:863
    #1 0x557cbe82ca9d in verify_one /home/phil/src/git/cache-tree.c:840
    #2 0x557cbe82ca9d in verify_one /home/phil/src/git/cache-tree.c:840
    #3 0x557cbe82ca9d in verify_one /home/phil/src/git/cache-tree.c:840
    #4 0x557cbe830a2b in cache_tree_verify /home/phil/src/git/cache-tree.c:910
    #5 0x557cbea53741 in write_locked_index /home/phil/src/git/read-cache.c:3250
    #6 0x557cbeab7fdd in reset_head /home/phil/src/git/reset.c:87
    #7 0x557cbe72147f in cmd_rebase builtin/rebase.c:2074
    #8 0x557cbe5bd151 in run_builtin /home/phil/src/git/git.c:461
    #9 0x557cbe5bd151 in handle_builtin /home/phil/src/git/git.c:714
    #10 0x557cbe5c0503 in run_argv /home/phil/src/git/git.c:781
    #11 0x557cbe5c0503 in cmd_main /home/phil/src/git/git.c:912
    #12 0x557cbe5bad28 in main /home/phil/src/git/common-main.c:52
    #13 0x7fdd4b82eb24 in __libc_start_main (/usr/lib/libc.so.6+0x27b24)
    #14 0x557cbe5bcb8d in _start (/home/phil/src/git/git+0x1b9b8d)

0x606000001b20 is located 0 bytes inside of 56-byte region [0x606000001b20,0x606000001b58)
freed by thread T0 here:
    #0 0x7fdd4bacff19 in __interceptor_free /build/gcc/src/gcc/libsanitizer/asan/asan_malloc_linux.cpp:127
    #1 0x557cbe82af60 in cache_tree_free /home/phil/src/git/cache-tree.c:35
    #2 0x557cbe82aee5 in cache_tree_free /home/phil/src/git/cache-tree.c:31
    #3 0x557cbe82aee5 in cache_tree_free /home/phil/src/git/cache-tree.c:31
    #4 0x557cbe82aee5 in cache_tree_free /home/phil/src/git/cache-tree.c:31
    #5 0x557cbeb2557a in ensure_full_index /home/phil/src/git/sparse-index.c:310
    #6 0x557cbea45c4a in index_name_stage_pos /home/phil/src/git/read-cache.c:588
    #7 0x557cbe82ce37 in verify_one /home/phil/src/git/cache-tree.c:850
    #8 0x557cbe82ca9d in verify_one /home/phil/src/git/cache-tree.c:840
    #9 0x557cbe82ca9d in verify_one /home/phil/src/git/cache-tree.c:840
    #10 0x557cbe82ca9d in verify_one /home/phil/src/git/cache-tree.c:840
    #11 0x557cbe830a2b in cache_tree_verify /home/phil/src/git/cache-tree.c:910
    #12 0x557cbea53741 in write_locked_index /home/phil/src/git/read-cache.c:3250
    #13 0x557cbeab7fdd in reset_head /home/phil/src/git/reset.c:87
    #14 0x557cbe72147f in cmd_rebase builtin/rebase.c:2074
    #15 0x557cbe5bd151 in run_builtin /home/phil/src/git/git.c:461
    #16 0x557cbe5bd151 in handle_builtin /home/phil/src/git/git.c:714
    #17 0x557cbe5c0503 in run_argv /home/phil/src/git/git.c:781
    #18 0x557cbe5c0503 in cmd_main /home/phil/src/git/git.c:912
    #19 0x557cbe5bad28 in main /home/phil/src/git/common-main.c:52
    #20 0x7fdd4b82eb24 in __libc_start_main (/usr/lib/libc.so.6+0x27b24)

previously allocated by thread T0 here:
    #0 0x7fdd4bad0459 in __interceptor_calloc /build/gcc/src/gcc/libsanitizer/asan/asan_malloc_linux.cpp:154
    #1 0x557cbebc1807 in xcalloc /home/phil/src/git/wrapper.c:140
    #2 0x557cbe82b7d8 in cache_tree /home/phil/src/git/cache-tree.c:17
    #3 0x557cbe82b7d8 in prime_cache_tree_rec /home/phil/src/git/cache-tree.c:763
    #4 0x557cbe82b837 in prime_cache_tree_rec /home/phil/src/git/cache-tree.c:764
    #5 0x557cbe82b837 in prime_cache_tree_rec /home/phil/src/git/cache-tree.c:764
    #6 0x557cbe8304e1 in prime_cache_tree /home/phil/src/git/cache-tree.c:779
    #7 0x557cbeab7fa7 in reset_head /home/phil/src/git/reset.c:85
    #8 0x557cbe72147f in cmd_rebase builtin/rebase.c:2074
    #9 0x557cbe5bd151 in run_builtin /home/phil/src/git/git.c:461
    #10 0x557cbe5bd151 in handle_builtin /home/phil/src/git/git.c:714
    #11 0x557cbe5c0503 in run_argv /home/phil/src/git/git.c:781
    #12 0x557cbe5c0503 in cmd_main /home/phil/src/git/git.c:912
    #13 0x557cbe5bad28 in main /home/phil/src/git/common-main.c:52
    #14 0x7fdd4b82eb24 in __libc_start_main (/usr/lib/libc.so.6+0x27b24)

Signed-off-by: Phillip Wood <phillip.wood@dunelm.org.uk>
Signed-off-by: Derrick Stolee <dstolee@microsoft.com>
derrickstolee pushed a commit that referenced this pull request Oct 26, 2021
In a sparse index it is possible for the tree that is being verified
to be freed while it is being verified. This happens when the index is
sparse but the cache tree is not and index_name_pos() looks up a path
from the cache tree that is a descendant of a sparse index entry. That
triggers a call to ensure_full_index() which frees the cache tree that
is being verified.  Carrying on trying to verify the tree after this
results in a use-after-free bug. Instead restart the verification if a
sparse index is converted to a full index. This bug is triggered by a
call to reset_head() in "git rebase --apply". Thanks to René Scharfe
and Derrick Stolee for their help analyzing the problem.

==74345==ERROR: AddressSanitizer: heap-use-after-free on address 0x606000001b20 at pc 0x557cbe82d3a2 bp 0x7ffdfee08090 sp 0x7ffdfee08080
READ of size 4 at 0x606000001b20 thread T0
    #0 0x557cbe82d3a1 in verify_one /home/phil/src/git/cache-tree.c:863
    #1 0x557cbe82ca9d in verify_one /home/phil/src/git/cache-tree.c:840
    #2 0x557cbe82ca9d in verify_one /home/phil/src/git/cache-tree.c:840
    #3 0x557cbe82ca9d in verify_one /home/phil/src/git/cache-tree.c:840
    #4 0x557cbe830a2b in cache_tree_verify /home/phil/src/git/cache-tree.c:910
    #5 0x557cbea53741 in write_locked_index /home/phil/src/git/read-cache.c:3250
    #6 0x557cbeab7fdd in reset_head /home/phil/src/git/reset.c:87
    #7 0x557cbe72147f in cmd_rebase builtin/rebase.c:2074
    #8 0x557cbe5bd151 in run_builtin /home/phil/src/git/git.c:461
    #9 0x557cbe5bd151 in handle_builtin /home/phil/src/git/git.c:714
    #10 0x557cbe5c0503 in run_argv /home/phil/src/git/git.c:781
    #11 0x557cbe5c0503 in cmd_main /home/phil/src/git/git.c:912
    #12 0x557cbe5bad28 in main /home/phil/src/git/common-main.c:52
    #13 0x7fdd4b82eb24 in __libc_start_main (/usr/lib/libc.so.6+0x27b24)
    #14 0x557cbe5bcb8d in _start (/home/phil/src/git/git+0x1b9b8d)

0x606000001b20 is located 0 bytes inside of 56-byte region [0x606000001b20,0x606000001b58)
freed by thread T0 here:
    #0 0x7fdd4bacff19 in __interceptor_free /build/gcc/src/gcc/libsanitizer/asan/asan_malloc_linux.cpp:127
    #1 0x557cbe82af60 in cache_tree_free /home/phil/src/git/cache-tree.c:35
    #2 0x557cbe82aee5 in cache_tree_free /home/phil/src/git/cache-tree.c:31
    #3 0x557cbe82aee5 in cache_tree_free /home/phil/src/git/cache-tree.c:31
    #4 0x557cbe82aee5 in cache_tree_free /home/phil/src/git/cache-tree.c:31
    #5 0x557cbeb2557a in ensure_full_index /home/phil/src/git/sparse-index.c:310
    #6 0x557cbea45c4a in index_name_stage_pos /home/phil/src/git/read-cache.c:588
    #7 0x557cbe82ce37 in verify_one /home/phil/src/git/cache-tree.c:850
    #8 0x557cbe82ca9d in verify_one /home/phil/src/git/cache-tree.c:840
    #9 0x557cbe82ca9d in verify_one /home/phil/src/git/cache-tree.c:840
    #10 0x557cbe82ca9d in verify_one /home/phil/src/git/cache-tree.c:840
    #11 0x557cbe830a2b in cache_tree_verify /home/phil/src/git/cache-tree.c:910
    #12 0x557cbea53741 in write_locked_index /home/phil/src/git/read-cache.c:3250
    #13 0x557cbeab7fdd in reset_head /home/phil/src/git/reset.c:87
    #14 0x557cbe72147f in cmd_rebase builtin/rebase.c:2074
    #15 0x557cbe5bd151 in run_builtin /home/phil/src/git/git.c:461
    #16 0x557cbe5bd151 in handle_builtin /home/phil/src/git/git.c:714
    #17 0x557cbe5c0503 in run_argv /home/phil/src/git/git.c:781
    #18 0x557cbe5c0503 in cmd_main /home/phil/src/git/git.c:912
    #19 0x557cbe5bad28 in main /home/phil/src/git/common-main.c:52
    #20 0x7fdd4b82eb24 in __libc_start_main (/usr/lib/libc.so.6+0x27b24)

previously allocated by thread T0 here:
    #0 0x7fdd4bad0459 in __interceptor_calloc /build/gcc/src/gcc/libsanitizer/asan/asan_malloc_linux.cpp:154
    #1 0x557cbebc1807 in xcalloc /home/phil/src/git/wrapper.c:140
    #2 0x557cbe82b7d8 in cache_tree /home/phil/src/git/cache-tree.c:17
    #3 0x557cbe82b7d8 in prime_cache_tree_rec /home/phil/src/git/cache-tree.c:763
    #4 0x557cbe82b837 in prime_cache_tree_rec /home/phil/src/git/cache-tree.c:764
    #5 0x557cbe82b837 in prime_cache_tree_rec /home/phil/src/git/cache-tree.c:764
    #6 0x557cbe8304e1 in prime_cache_tree /home/phil/src/git/cache-tree.c:779
    #7 0x557cbeab7fa7 in reset_head /home/phil/src/git/reset.c:85
    #8 0x557cbe72147f in cmd_rebase builtin/rebase.c:2074
    #9 0x557cbe5bd151 in run_builtin /home/phil/src/git/git.c:461
    #10 0x557cbe5bd151 in handle_builtin /home/phil/src/git/git.c:714
    #11 0x557cbe5c0503 in run_argv /home/phil/src/git/git.c:781
    #12 0x557cbe5c0503 in cmd_main /home/phil/src/git/git.c:912
    #13 0x557cbe5bad28 in main /home/phil/src/git/common-main.c:52
    #14 0x7fdd4b82eb24 in __libc_start_main (/usr/lib/libc.so.6+0x27b24)

Signed-off-by: Phillip Wood <phillip.wood@dunelm.org.uk>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
derrickstolee added a commit that referenced this pull request Nov 2, 2021
When I was playing around with trace2 data and creating flamegraphs, I tried a `git fetch` call to see how the `git-remote-https` command would show up. What I didn't expect was an `ensure_full_index()` region!

It turns out that `git fetch` and `git pull` need to check the index for a `.gitmodules` file to see if it should recurse into any submodules. Here is the stack trace from a debugger:

```
#0  ensure_full_index (istate=0x555555ac1c80 <the_index>) at sparse-index.c:404
#1  0x000055555571a979 in do_read_index (istate=istate@entry=0x555555ac1c80 <the_index>, path=path@entry=0x555555ad7b90 ".git/index", must_exist=must_exist@entry=0) at read-cache.c:2386
#2  0x000055555571eb7d in do_read_index (must_exist=0, path=0x555555ad7b90 ".git/index", istate=0x555555ac1c80 <the_index>) at hash.h:244
#3  read_index_from (istate=0x555555ac1c80 <the_index>, path=0x555555ad7b90 ".git/index", gitdir=0x555555ad7b30 ".git") at read-cache.c:2426
#4  0x000055555573f4c2 in repo_read_index (repo=repo@entry=0x555555ac1da0 <the_repo>) at repository.c:286
#5  0x00005555556f14d0 in get_oid_with_context_1 (repo=repo@entry=0x555555ac1da0 <the_repo>, name=name@entry=0x55555582c022 ":.gitmodules", flags=flags@entry=0, prefix=prefix@entry=0x0, 
    oid=oid@entry=0x7fffffffdb00, oc=oc@entry=0x7fffffffda70) at object-name.c:1850
#6  0x00005555556f1f53 in get_oid_with_context (oc=0x7fffffffda70, oid=0x7fffffffdb00, flags=0, str=0x55555582c022 ":.gitmodules", repo=0x555555ac1da0 <the_repo>) at object-name.c:1947
#7  repo_get_oid (r=r@entry=0x555555ac1da0 <the_repo>, name=name@entry=0x55555582c022 ":.gitmodules", oid=oid@entry=0x7fffffffdb00) at object-name.c:1603
#8  0x000055555577330f in config_from_gitmodules (fn=fn@entry=0x555555773460 <gitmodules_fetch_config>, repo=0x555555ac1da0 <the_repo>, data=data@entry=0x7fffffffdb60) at submodule-config.c:650
#9  0x000055555577462d in config_from_gitmodules (data=0x7fffffffdb60, repo=<optimized out>, fn=0x555555773460 <gitmodules_fetch_config>) at submodule-config.c:638
#10 fetch_config_from_gitmodules (max_children=<optimized out>, recurse_submodules=<optimized out>) at submodule-config.c:800
#11 0x00005555555b9e41 in cmd_fetch (argc=1, argv=0x7fffffffe090, prefix=0x0) at builtin/fetch.c:1999
#12 0x0000555555573ff6 in run_builtin (argv=<optimized out>, argc=<optimized out>, p=<optimized out>) at git.c:528
#13 handle_builtin (argc=<optimized out>, argv=<optimized out>) at git.c:785
#14 0x000055555557528c in run_argv (argv=0x7fffffffddf0, argcp=0x7fffffffddfc) at git.c:857
#15 cmd_main (argc=<optimized out>, argv=<optimized out>) at git.c:993
#16 0x0000555555573ac8 in main (argc=3, argv=0x7fffffffe088) at common-main.c:52
```

The operations these commands use are guarded by items such as `index_name_pos()` and others. Since the `.gitmodules` file is always at root, we would not need to expand, anyway.
derrickstolee added a commit that referenced this pull request Nov 8, 2021
When I was playing around with trace2 data and creating flamegraphs, I tried a `git fetch` call to see how the `git-remote-https` command would show up. What I didn't expect was an `ensure_full_index()` region!

It turns out that `git fetch` and `git pull` need to check the index for a `.gitmodules` file to see if it should recurse into any submodules. Here is the stack trace from a debugger:

```
#0  ensure_full_index (istate=0x555555ac1c80 <the_index>) at sparse-index.c:404
#1  0x000055555571a979 in do_read_index (istate=istate@entry=0x555555ac1c80 <the_index>, path=path@entry=0x555555ad7b90 ".git/index", must_exist=must_exist@entry=0) at read-cache.c:2386
#2  0x000055555571eb7d in do_read_index (must_exist=0, path=0x555555ad7b90 ".git/index", istate=0x555555ac1c80 <the_index>) at hash.h:244
#3  read_index_from (istate=0x555555ac1c80 <the_index>, path=0x555555ad7b90 ".git/index", gitdir=0x555555ad7b30 ".git") at read-cache.c:2426
#4  0x000055555573f4c2 in repo_read_index (repo=repo@entry=0x555555ac1da0 <the_repo>) at repository.c:286
#5  0x00005555556f14d0 in get_oid_with_context_1 (repo=repo@entry=0x555555ac1da0 <the_repo>, name=name@entry=0x55555582c022 ":.gitmodules", flags=flags@entry=0, prefix=prefix@entry=0x0, 
    oid=oid@entry=0x7fffffffdb00, oc=oc@entry=0x7fffffffda70) at object-name.c:1850
#6  0x00005555556f1f53 in get_oid_with_context (oc=0x7fffffffda70, oid=0x7fffffffdb00, flags=0, str=0x55555582c022 ":.gitmodules", repo=0x555555ac1da0 <the_repo>) at object-name.c:1947
#7  repo_get_oid (r=r@entry=0x555555ac1da0 <the_repo>, name=name@entry=0x55555582c022 ":.gitmodules", oid=oid@entry=0x7fffffffdb00) at object-name.c:1603
#8  0x000055555577330f in config_from_gitmodules (fn=fn@entry=0x555555773460 <gitmodules_fetch_config>, repo=0x555555ac1da0 <the_repo>, data=data@entry=0x7fffffffdb60) at submodule-config.c:650
#9  0x000055555577462d in config_from_gitmodules (data=0x7fffffffdb60, repo=<optimized out>, fn=0x555555773460 <gitmodules_fetch_config>) at submodule-config.c:638
#10 fetch_config_from_gitmodules (max_children=<optimized out>, recurse_submodules=<optimized out>) at submodule-config.c:800
#11 0x00005555555b9e41 in cmd_fetch (argc=1, argv=0x7fffffffe090, prefix=0x0) at builtin/fetch.c:1999
#12 0x0000555555573ff6 in run_builtin (argv=<optimized out>, argc=<optimized out>, p=<optimized out>) at git.c:528
#13 handle_builtin (argc=<optimized out>, argv=<optimized out>) at git.c:785
#14 0x000055555557528c in run_argv (argv=0x7fffffffddf0, argcp=0x7fffffffddfc) at git.c:857
#15 cmd_main (argc=<optimized out>, argv=<optimized out>) at git.c:993
#16 0x0000555555573ac8 in main (argc=3, argv=0x7fffffffe088) at common-main.c:52
```

The operations these commands use are guarded by items such as `index_name_pos()` and others. Since the `.gitmodules` file is always at root, we would not need to expand, anyway.
derrickstolee added a commit that referenced this pull request Nov 10, 2021
When I was playing around with trace2 data and creating flamegraphs, I tried a `git fetch` call to see how the `git-remote-https` command would show up. What I didn't expect was an `ensure_full_index()` region!

It turns out that `git fetch` and `git pull` need to check the index for a `.gitmodules` file to see if it should recurse into any submodules. Here is the stack trace from a debugger:

```
#0  ensure_full_index (istate=0x555555ac1c80 <the_index>) at sparse-index.c:404
#1  0x000055555571a979 in do_read_index (istate=istate@entry=0x555555ac1c80 <the_index>, path=path@entry=0x555555ad7b90 ".git/index", must_exist=must_exist@entry=0) at read-cache.c:2386
#2  0x000055555571eb7d in do_read_index (must_exist=0, path=0x555555ad7b90 ".git/index", istate=0x555555ac1c80 <the_index>) at hash.h:244
#3  read_index_from (istate=0x555555ac1c80 <the_index>, path=0x555555ad7b90 ".git/index", gitdir=0x555555ad7b30 ".git") at read-cache.c:2426
#4  0x000055555573f4c2 in repo_read_index (repo=repo@entry=0x555555ac1da0 <the_repo>) at repository.c:286
#5  0x00005555556f14d0 in get_oid_with_context_1 (repo=repo@entry=0x555555ac1da0 <the_repo>, name=name@entry=0x55555582c022 ":.gitmodules", flags=flags@entry=0, prefix=prefix@entry=0x0, 
    oid=oid@entry=0x7fffffffdb00, oc=oc@entry=0x7fffffffda70) at object-name.c:1850
#6  0x00005555556f1f53 in get_oid_with_context (oc=0x7fffffffda70, oid=0x7fffffffdb00, flags=0, str=0x55555582c022 ":.gitmodules", repo=0x555555ac1da0 <the_repo>) at object-name.c:1947
#7  repo_get_oid (r=r@entry=0x555555ac1da0 <the_repo>, name=name@entry=0x55555582c022 ":.gitmodules", oid=oid@entry=0x7fffffffdb00) at object-name.c:1603
#8  0x000055555577330f in config_from_gitmodules (fn=fn@entry=0x555555773460 <gitmodules_fetch_config>, repo=0x555555ac1da0 <the_repo>, data=data@entry=0x7fffffffdb60) at submodule-config.c:650
#9  0x000055555577462d in config_from_gitmodules (data=0x7fffffffdb60, repo=<optimized out>, fn=0x555555773460 <gitmodules_fetch_config>) at submodule-config.c:638
#10 fetch_config_from_gitmodules (max_children=<optimized out>, recurse_submodules=<optimized out>) at submodule-config.c:800
#11 0x00005555555b9e41 in cmd_fetch (argc=1, argv=0x7fffffffe090, prefix=0x0) at builtin/fetch.c:1999
#12 0x0000555555573ff6 in run_builtin (argv=<optimized out>, argc=<optimized out>, p=<optimized out>) at git.c:528
#13 handle_builtin (argc=<optimized out>, argv=<optimized out>) at git.c:785
#14 0x000055555557528c in run_argv (argv=0x7fffffffddf0, argcp=0x7fffffffddfc) at git.c:857
#15 cmd_main (argc=<optimized out>, argv=<optimized out>) at git.c:993
#16 0x0000555555573ac8 in main (argc=3, argv=0x7fffffffe088) at common-main.c:52
```

The operations these commands use are guarded by items such as `index_name_pos()` and others. Since the `.gitmodules` file is always at root, we would not need to expand, anyway.
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