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[WIP] Minor: Automatically track available BAC and model chemistry in Arkane#396

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[WIP] Minor: Automatically track available BAC and model chemistry in Arkane#396
oscarwumit wants to merge 2 commits into
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model_chem_update

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@oscarwumit

@oscarwumit oscarwumit commented May 12, 2020

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Automatically track available BAC and model chemistry in Arkane.

Comment thread arc/main.py Outdated
if sp_level not in ['ccsd(t)-f12/cc-pvdz-f12', 'ccsd(t)-f12/cc-pvtz-f12', 'ccsd(t)-f12/cc-pvqz-f12',
'b3lyp/cbsb7', 'b3lyp/6-311g(2d,d,p)', 'b3lyp/6-311+g(3df,2p)', 'b3lyp/6-31g(d,p)']\
and self.use_bac:
sp_levels_with_bac_support = ['ccsd(t)-f12/cc-pvdz-f12',

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can we automate this somehow instead of hard coding and manually updating it?
I can give you a parameter with the path to the RMG-db of the user, we'll need to write a parser to the file.
If you want to merge this in ASAP instead, that's also OK

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I think all you need to do is import pbac and mbac from arkane.encorr.data. These are dictionaries with model chemistry as keys. Therefore, you can generate a list of model chemistries with BAC support automatically and on-the-fly

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Many thanks. I have updated the code using pbac and mbac. @amarkpayne Is there also a dictionary of model chemistry in Arkane we can import to improve line 760?

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I think any model chemistry we have in Arkane will at least have atom energies (I don't know of any that we have BACs for but not atom energies, that would be very strange) so you could look at the atom energy keys

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Thanks.

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codecov Bot commented May 12, 2020

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Codecov Report

Merging #396 into master will increase coverage by 0.00%.
The diff coverage is 100.00%.

Impacted file tree graph

@@           Coverage Diff           @@
##           master     #396   +/-   ##
=======================================
  Coverage   54.54%   54.54%           
=======================================
  Files          34       34           
  Lines       11904    11905    +1     
  Branches     3633     3633           
=======================================
+ Hits         6493     6494    +1     
  Misses       4458     4458           
  Partials      953      953           
Impacted Files Coverage Δ
arc/main.py 63.90% <100.00%> (+0.04%) ⬆️

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@oscarwumit oscarwumit force-pushed the model_chem_update branch from f947ce7 to 24071fc Compare May 12, 2020 21:09
@oscarwumit oscarwumit changed the title Minor: update sp levels with BAC support Minor: Automatically track available BAC and model chemistry in Arakane May 12, 2020
@oscarwumit oscarwumit changed the title Minor: Automatically track available BAC and model chemistry in Arakane Minor: Automatically track available BAC and model chemistry in Arkane May 12, 2020
@oscarwumit oscarwumit changed the title Minor: Automatically track available BAC and model chemistry in Arkane [WIP] Minor: Automatically track available BAC and model chemistry in Arkane May 13, 2020
@oscarwumit

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This PR needs ReactionMechanismGenerator/RMG-database#404 to be merged.

@alongd

alongd commented Jun 4, 2020

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@oscarwumit, is there anything here not in #399 that we'd like to implement?

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We can close this PR, but please keep the branch as this is need for using BAC corrections for dlpno/ccsd(t)/def2tzvp//wb97xd/defttzvp, which is not merged into RMG yet.

@alongd

alongd commented Jun 6, 2020

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OK

@alongd alongd closed this Jun 6, 2020
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