Running ./modules/transforms_demo_2d.ipynb
Checking PEP8 compliance...
Running notebook...
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Executing: 20%|██ | 4/20 [00:08<00:26, 1.69s/cell]
Executing: 50%|█████ | 10/20 [00:24<00:20, 2.02s/cell]
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Executing: 70%|███████ | 14/20 [00:30<00:12, 2.16s/cell]
Traceback (most recent call last):
File "/opt/conda/bin/papermill", line 8, in <module>
sys.exit(papermill())
File "/opt/conda/lib/python3.8/site-packages/click/core.py", line 829, in __call__
return self.main(*args, **kwargs)
File "/opt/conda/lib/python3.8/site-packages/click/core.py", line 782, in main
rv = self.invoke(ctx)
File "/opt/conda/lib/python3.8/site-packages/click/core.py", line 1066, in invoke
return ctx.invoke(self.callback, **ctx.params)
File "/opt/conda/lib/python3.8/site-packages/click/core.py", line 610, in invoke
return callback(*args, **kwargs)
File "/opt/conda/lib/python3.8/site-packages/click/decorators.py", line 21, in new_func
return f(get_current_context(), *args, **kwargs)
File "/opt/conda/lib/python3.8/site-packages/papermill/cli.py", line 250, in papermill
execute_notebook(
File "/opt/conda/lib/python3.8/site-packages/papermill/execute.py", line 122, in execute_notebook
raise_for_execution_errors(nb, output_path)
File "/opt/conda/lib/python3.8/site-packages/papermill/execute.py", line 234, in raise_for_execution_errors
raise error
papermill.exceptions.PapermillExecutionError:
---------------------------------------------------------------------------
Exception encountered at "In [8]":
---------------------------------------------------------------------------
AttributeError Traceback (most recent call last)
<ipython-input-8-63f386481380> in <module>
14 new_img = affine(im_data, (300, 400), mode="bilinear")
15 new_seg = affine(seg_data, (300, 400), mode="nearest")
---> 16 print(new_img.shape, new_seg.shape)
AttributeError: 'tuple' object has no attribute 'shape'
Describe the bug
full logs at https://github.com/Project-MONAI/MONAI/runs/2199322271?check_suite_focus=true
due to the recent PR Project-MONAI/MONAI#1836