Dev#161
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robert-a-forsyth wants to merge 327 commits into
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ascat raw segments txt files added to output + fixed pdf plot output
Missing output file(s) `phasing_output/*.rephased.vcf.gz` expected by process `INTGENOMICSLAB_LRSOMATIC:LRSOMATIC:WAKHAN
Fix path pattern for rephased VCF files
…ements and removing versioning where it is done with topic channels
initial syntax changes and bulk modules update
add long_phase supplementary alignment tag to extended args
added changelog and docs
… into template_update
template update
Bug fix consensus
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PR checklist
nf-core pipelines lint).nextflow run . -profile test,docker --outdir <OUTDIR>).nextflow run . -profile debug,test,docker --outdir <OUTDIR>).docs/usage.mdis updated.docs/output.mdis updated.CHANGELOG.mdis updated.README.mdis updated (including new tool citations and authors/contributors).