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@talmolab

Talmo Lab at the Salk Institute

Talmo Pereira's research group at the Salk Institute for Biological Studies.

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  1. sleap sleap Public

    A deep learning framework for multi-animal pose tracking.

    Python 569 125

  2. sleap-io sleap-io Public

    Standalone utilities for SLEAP pose tracking data.

    Python 21 15

  3. sleap-anipose sleap-anipose Public

    SLEAP to Anipose triangulation pipeline for 3D multi-animal pose tracking.

    Python 31 7

  4. sleap-roots sleap-roots Public

    Analysis tools for SLEAP-based plant root phenotyping.

    Python 13

  5. dreem dreem Public

    DREEM Relates Every Entities' Motion (DREEM). Global Tracking Transformers for biological multi-object tracking.

    Python 16 3

  6. sleap-nn sleap-nn Public

    Neural network backend for training and inference for animal pose estimation.

    Python 18 7

Repositories

Showing 10 of 88 repositories
  • track-mjx Public
    talmolab/track-mjx’s past year of commit activity
    Jupyter Notebook 16 BSD-3-Clause 0 41 3 Updated Apr 8, 2026
  • stac-mjx Public

    Implementation of STAC using MJX for GPU acceleration. Part of VNL project.

    talmolab/stac-mjx’s past year of commit activity
    Jupyter Notebook 23 BSD-3-Clause 5 35 3 Updated Apr 8, 2026
  • vnl-playground Public

    Virtual Neuro Lab (VNL). Deep Reinforcement Learning Environments in JAX with MuJoCo MJX/Playground

    talmolab/vnl-playground’s past year of commit activity
    Jupyter Notebook 7 BSD-3-Clause 0 11 2 Updated Apr 8, 2026
  • lablink Public
    talmolab/lablink’s past year of commit activity
    Python 3 BSD-2-Clause 0 16 2 Updated Apr 8, 2026
  • lablink-template Public template

    Documentation for LabLink template repo.

    talmolab/lablink-template’s past year of commit activity
    Shell 1 BSD-2-Clause 0 4 0 Updated Apr 8, 2026
  • sleap-io.js Public
    talmolab/sleap-io.js’s past year of commit activity
    TypeScript 0 BSD-3-Clause 0 1 0 Updated Apr 8, 2026
  • sleap-io Public

    Standalone utilities for SLEAP pose tracking data.

    talmolab/sleap-io’s past year of commit activity
    Python 21 BSD-3-Clause 15 3 0 Updated Apr 8, 2026
  • emdee Public

    A fast, minimal, cross-platform markdown viewer. Opens .md files natively on macOS, Windows, and Linux.

    talmolab/emdee’s past year of commit activity
    JavaScript 0 MIT 0 1 0 Updated Apr 7, 2026
  • sam-track Public

    Track objects in videos using SAM3

    talmolab/sam-track’s past year of commit activity
    Python 4 BSD-3-Clause 4 0 2 Updated Apr 6, 2026
  • talmolab/lablink-paper-figures’s past year of commit activity
    Python 0 0 0 0 Updated Apr 5, 2026

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