Is is_fastq_gz suppose to be false for bam files? I think it is currently set to false, which causes bam files to be read as regular file instead of binary in get_tile_split_position. I get weird-looking output when I print out the first line of bam file in this funciton.
Is
is_fastq_gzsuppose to befalsefor bam files? I think it is currently set tofalse, which causes bam files to be read as regular file instead of binary inget_tile_split_position. I get weird-looking output when I print out the first line of bam file in this funciton.