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Pull requests: scverse/squidpy

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Pull requests list

cache hed scores in qc_metrics
#1152 opened Apr 8, 2026 by selmanozleyen Loading…
Add pluggable backend dispatch system
#1151 opened Apr 7, 2026 by Intron7 • Draft
12
feat: stalign support for pointclouds
#1150 opened Apr 7, 2026 by selmanozleyen • Draft
1
3
[pre-commit.ci] pre-commit autoupdate
#1149 opened Apr 6, 2026 by pre-commit-ci bot Loading…
1
spatial_neigbours extensibility features and clarification
#1147 opened Apr 2, 2026 by selmanozleyen Loading…
1
@selmanozleyen
20
feat: parallelize per-library spatial graph construction
#1144 opened Mar 23, 2026 by Marius1311 Loading…
1
chore: fix spatialdata access in squidpy via a helper function
#1134 opened Mar 2, 2026 by selmanozleyen Loading…
@selmanozleyen
14
Fix SpatialData table access and and fix getting full key names
#1133 opened Mar 2, 2026 by nilchia Loading…
3
chore: ligrec add explicit reproducibility tests
#1132 opened Mar 2, 2026 by selmanozleyen Loading…
9
feat: remove ligrec parallelize
#1125 opened Feb 23, 2026 by selmanozleyen Loading…
@selmanozleyen
24
feat: remove unnecessary parallelize usage in sepal
#1120 opened Feb 20, 2026 by selmanozleyen Loading…
@selmanozleyen
13
bandaid fix for xarray_schema using pkg_resources instead of importlib.metadata
#1117 opened Feb 18, 2026 by timtreis Loading…
1
7
Improved sliding windows
#1116 opened Feb 10, 2026 by schrf Loading…
1
5
Experimental Feature: Function delegation to rapids_singlecell when gpu is available
#1093 opened Jan 14, 2026 by selmanozleyen • Draft
@selmanozleyen
22
Add new spatial graph features and tests (closes #901)
#1091 opened Jan 3, 2026 by luckyy14 Loading…
1
Update template to v0.7.0
#1090 opened Dec 24, 2025 by scverse-bot Loading…
Add Pytest Benchmarks Feature pytest-benchmark
#1070 opened Dec 1, 2025 by selmanozleyen • Draft
1
update var by dist normalization
#1065 opened Nov 20, 2025 by LLehner Loading…
5
Functions to QC histopathology images
#1036 opened Sep 14, 2025 by timtreis Loading…
1
29
Use the correct image for scatter plots with alternate spatial bases
#1032 opened Sep 8, 2025 by obriencshl Loading…
5
Add COZI to nhood_enrichment()
#1023 opened Aug 12, 2025 by chiarasch Loading…
1 task done
@selmanozleyen
4
Adding Benchmarks benchmark enhancement ✨ New feature or request
#1016 opened Jul 10, 2025 by selmanozleyen Loading…
@flying-sheep @selmanozleyen
5
sq.pp.filter_cells for SpatialData
#1011 opened Jun 18, 2025 by selmanozleyen Loading…
1 task done
1
1
[EXPERIMENTAL]: Integrate cp-measure enhancement ✨ New feature or request image 🔬 release-added sdata compat 🌌 squidpy2.0 Everything releated to a Squidpy 2.0 release
#982 opened Mar 28, 2025 by timtreis Loading…
6
Add filter function that subsets the entire object
#967 opened Mar 4, 2025 by timtreis • Draft
1
@selmanozleyen
1
ProTip! Updated in the last three days: updated:>2026-04-05.