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    • The official deployment of the Digital Slide Archive and HistomicsTK.
      Python
      Apache License 2.0
      61135320Updated Apr 30, 2026Apr 30, 2026
    • A Girder plugin for pathology image annotations and analysis.
      JavaScript
      Apache License 2.0
      2879453Updated Apr 24, 2026Apr 24, 2026
    • dive-dsa

      Public
      DIVE for Digital Slide Archive
      Vue
      Apache License 2.0
      0153Updated Apr 22, 2026Apr 22, 2026
    • A workflow for redacting PHI from whole slide images (WSI) based on the Digital Slide Archive.
      Python
      Apache License 2.0
      718130Updated Apr 20, 2026Apr 20, 2026
    • Python
      Other
      33101Updated Apr 16, 2026Apr 16, 2026
    • Python
      Apache License 2.0
      211150Updated Apr 7, 2026Apr 7, 2026
    • A Python toolkit for pathology image analysis algorithms.
      Python
      Apache License 2.0
      128470252Updated Apr 6, 2026Apr 6, 2026
    • Python
      Other
      0000Updated Mar 25, 2026Mar 25, 2026
    • A Girder plugin for connecting remote Girder instances as Assetstores
      Python
      Other
      0040Updated Mar 25, 2026Mar 25, 2026
    • Experimental utilities for use with large_image
      Python
      Apache License 2.0
      1400Updated Feb 12, 2026Feb 12, 2026
    • tifftools

      Public
      Pure Python tools for reading and writing all TIFF IFDs, sub-IFDs, and tags.
      Python
      Other
      65630Updated Jan 14, 2026Jan 14, 2026
    • Identify similar tissue within an image using foundational models
      Python
      Other
      1100Updated Dec 19, 2025Dec 19, 2025
    • Python
      Apache License 2.0
      0100Updated Nov 24, 2025Nov 24, 2025
    • A whole-slide image reader for TensorFlow
      Python
      Apache License 2.0
      62590Updated Nov 24, 2025Nov 24, 2025
    • A test cli for classifying superpixels with arbitrary labels
      Python
      Other
      4504Updated Nov 24, 2025Nov 24, 2025
    • Infrastructure-as-code scripts for deploying high-availability, scalable Histomics on AWS
      HCL
      1050Updated Nov 7, 2025Nov 7, 2025
    • A Girder plugin for data import tracking in HistomicsUI
      Python
      Other
      2271Updated Oct 6, 2025Oct 6, 2025
    • Python
      Other
      2100Updated Jul 16, 2025Jul 16, 2025
    • A user-interface used in conjunction with HistomicsUI to facilitate active learning on whole slide images
      Vue
      Other
      74144Updated Jun 20, 2025Jun 20, 2025
    • ALBench

      Public
      Benchmarking tool for evaluating Active Learning strategies for machine learning
      Python
      Apache License 2.0
      2530Updated Sep 4, 2024Sep 4, 2024
    • HCL
      Apache License 2.0
      0030Updated Jul 18, 2024Jul 18, 2024
    • A Girder plugin for annotation tracking in HistomicsUI
      JavaScript
      Other
      0422Updated Feb 15, 2024Feb 15, 2024
    • Python
      2130Updated Feb 1, 2024Feb 1, 2024
    • Python
      2420Updated Dec 15, 2023Dec 15, 2023
    • Python
      Other
      0002Updated Aug 1, 2023Aug 1, 2023
    • A large_image source using the Philips library for isyntax files
      Python
      Apache License 2.0
      0200Updated Jun 16, 2023Jun 16, 2023
    • A package for cell detection models using TensorFlow
      Python
      Apache License 2.0
      14100Updated Mar 20, 2023Mar 20, 2023
    • This repository contains adaptations of the state-of-the-art deep learning based object detection models for the detection of cell nuclei in histology images
      Python
      Apache License 2.0
      326022Updated Dec 8, 2022Dec 8, 2022
    • Whole Slide Image Deidentification for PHI
      Python
      Apache License 2.0
      02130Updated Aug 27, 2021Aug 27, 2021
    • HTAN

      Public
      Python
      Other
      1040Updated Jun 7, 2021Jun 7, 2021
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