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@DigitalSlideArchive Digital Slide Archive

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    38 repositories

    • digital_slide_archive

      Public
      The official deployment of the Digital Slide Archive and HistomicsTK.
      hacktoberfesthistologybioimage-informatics
      hacktoberfesthistologybioimage-informaticsdigital-slide-archivehistomicstk
      Python
      •
      Apache License 2.0
      •61•135•32•0•Updated Apr 30, 2026Apr 30, 2026

    • HistomicsUI

      Public
      A Girder plugin for pathology image annotations and analysis.
      pythonhistologydigital-slide-archive
      pythonhistologydigital-slide-archivebioimage-infomatics
      JavaScript
      •
      Apache License 2.0
      •28•79•45•3•Updated Apr 24, 2026Apr 24, 2026

    • dive-dsa

      Public
      DIVE for Digital Slide Archive
      Vue
      •
      Apache License 2.0
      •0•1•5•3•Updated Apr 22, 2026Apr 22, 2026

    • DSA-WSI-DeID

      Public
      A workflow for redacting PHI from whole slide images (WSI) based on the Digital Slide Archive.
      Python
      •
      Apache License 2.0
      •7•18•13•0•Updated Apr 20, 2026Apr 20, 2026

    • girder_volview

      Public
      Python
      •
      Other
      •3•3•10•1•Updated Apr 16, 2026Apr 16, 2026

    • ImageDePHI

      Public
      Python
      •
      Apache License 2.0
      •2•11•15•0•Updated Apr 7, 2026Apr 7, 2026

    • HistomicsTK

      Public
      A Python toolkit for pathology image analysis algorithms.
      pythonmachine-learningcomputer-vision
      pythonmachine-learningcomputer-visionhistologymedical-image-processingbioimage-informaticsdigital-slide-archive
      Python
      •
      Apache License 2.0
      •128•470•25•2•Updated Apr 6, 2026Apr 6, 2026

    • girder-clamav

      Public
      Python
      •
      Other
      •0•0•0•0•Updated Mar 25, 2026Mar 25, 2026

    • girder_assetstore

      Public
      A Girder plugin for connecting remote Girder instances as Assetstores
      Python
      •
      Other
      •0•0•4•0•Updated Mar 25, 2026Mar 25, 2026

    • large-image-utilities

      Public
      Experimental utilities for use with large_image
      Python
      •
      Apache License 2.0
      •1•4•0•0•Updated Feb 12, 2026Feb 12, 2026

    • tifftools

      Public
      Pure Python tools for reading and writing all TIFF IFDs, sub-IFDs, and tags.
      Python
      •
      Other
      •6•56•3•0•Updated Jan 14, 2026Jan 14, 2026

    • histomicstk-similarity

      Public
      Identify similar tissue within an image using foundational models
      Python
      •
      Other
      •1•1•0•0•Updated Dec 19, 2025Dec 19, 2025

    • girder-client-mount

      Public
      Python
      •
      Apache License 2.0
      •0•1•0•0•Updated Nov 24, 2025Nov 24, 2025

    • HistomicsStream

      Public
      A whole-slide image reader for TensorFlow
      Python
      •
      Apache License 2.0
      •6•25•9•0•Updated Nov 24, 2025Nov 24, 2025

    • superpixel-classification

      Public
      A test cli for classifying superpixels with arbitrary labels
      hacktoberfest
      hacktoberfest
      Python
      •
      Other
      •4•5•0•4•Updated Nov 24, 2025Nov 24, 2025

    • histomics_aws_deployment

      Public
      Infrastructure-as-code scripts for deploying high-availability, scalable Histomics on AWS
      HCL
      •1•0•5•0•Updated Nov 7, 2025Nov 7, 2025

    • import-tracker

      Public
      A Girder plugin for data import tracking in HistomicsUI
      Python
      •
      Other
      •2•2•7•1•Updated Oct 6, 2025Oct 6, 2025

    • histomicstk-extras

      Public
      Python
      •
      Other
      •2•1•0•0•Updated Jul 16, 2025Jul 16, 2025

    • histomics-label

      Public
      A user-interface used in conjunction with HistomicsUI to facilitate active learning on whole slide images
      pythonhistologybioimage-informatics
      pythonhistologybioimage-informaticsdigital-slide-archivewhole-slide-annotationwhole-slide-imagesguided-labeling
      Vue
      •
      Other
      •7•4•14•4•Updated Jun 20, 2025Jun 20, 2025

    • ALBench

      Public
      Benchmarking tool for evaluating Active Learning strategies for machine learning
      Python
      •
      Apache License 2.0
      •2•5•3•0•Updated Sep 4, 2024Sep 4, 2024

    • histomics_load_testing

      Public
      HCL
      •
      Apache License 2.0
      •0•0•3•0•Updated Jul 18, 2024Jul 18, 2024

    • annotation-tracker

      Public
      A Girder plugin for annotation tracking in HistomicsUI
      JavaScript
      •
      Other
      •0•4•2•2•Updated Feb 15, 2024Feb 15, 2024

    • histoqc-dsa-plugin

      Public
      Python
      •2•1•3•0•Updated Feb 1, 2024Feb 1, 2024

    • dsa-run-custom-ai-models

      Public
      Python
      •2•4•2•0•Updated Dec 15, 2023Dec 15, 2023

    • histomics-tour

      Public
      Python
      •
      Other
      •0•0•0•2•Updated Aug 1, 2023Aug 1, 2023

    • large_image_source_isyntax

      Public
      A large_image source using the Philips library for isyntax files
      Python
      •
      Apache License 2.0
      •0•2•0•0•Updated Jun 16, 2023Jun 16, 2023

    • HistomicsDetect

      Public
      A package for cell detection models using TensorFlow
      Python
      •
      Apache License 2.0
      •1•4•10•0•Updated Mar 20, 2023Mar 20, 2023

    • CNNCellDetection

      Public
      This repository contains adaptations of the state-of-the-art deep learning based object detection models for the detection of cell nuclei in histology images
      Python
      •
      Apache License 2.0
      •3•26•0•22•Updated Dec 8, 2022Dec 8, 2022

    • ImageDePHI-Phase-I

      Public
      Whole Slide Image Deidentification for PHI
      Python
      •
      Apache License 2.0
      •0•2•13•0•Updated Aug 27, 2021Aug 27, 2021

    • HTAN

      Public
      Python
      •
      Other
      •1•0•4•0•Updated Jun 7, 2021Jun 7, 2021
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