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fix: make standard scan inventory authoritative - #88

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mdangelo/codex/authoritative-scan-inventory
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fix: make standard scan inventory authoritative#88
mldangelo-oai wants to merge 37 commits into
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mdangelo/codex/authoritative-scan-inventory

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@mldangelo-oai mldangelo-oai commented Jul 29, 2026

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Summary

  • Materialize the exhaustive standard-scan inventory before starting Codex or spending model tokens.
  • Keep the bundled security-scan skill, standard workflow, artifact conventions, and capability preflight aligned with the host-attested JSONL inventory.
  • Include ignored first-party files and explicitly requested SDK or manual dependency scopes without recursively including unrelated .git, node_modules, or symlink entries.
  • Declare every omitted regular, broken, external, directory, and selected-dependency symlink as an exact exclusion; never silently claim that an unreviewed symlink was covered.
  • Persist the host-owned canonical exclusions at scan registration, safely migrate existing workbench databases without changing replayable recipes, and fail closed on corrupted or duplicate persisted exclusions.
  • Bind every Git-metadata, installed-dependency, and symbolic-link exclusion, including its reason, into scan.scope.excludePaths, coverage.excludePaths, and coverage.explicitExclusions; preserve explicitly requested dependencies even when a broader repository or package scope overlaps them or a requested scope disappears during the scan.
  • Fail closed when an in-scope directory cannot be safely enumerated.
  • Keep the exact read-only snapshot consumed by the model physically outside every writable state, output, and repository root, including supported broad state-directory configurations.
  • Attest both the durable inventory and protected snapshot before finalization, and fail before starting Codex if a genuinely read-only snapshot location is unavailable.
  • Stage the verifier outside every model-writable root, reject direct and indirect writable Python interpreter aliases, and independently verify the exact authoritative inventory before and after SDK finalizer recovery.
  • Seal the inventory, candidate ledger, and exhaustive review receipt together on one authoritative coverage surface; reject missing, split, duplicate, forged, or unbounded evidence.
  • Preserve every normalized candidate location across independently reportable child findings, including shared sinks outside the selected scope.
  • Require a unique, bidirectionally reconciled deferred candidate and its exact recorded proof gap; reject contradictory, reported, nonexistent, or falsely complete deferred outcomes.
  • Verify manual standard-scan coverage before strict finalization and preserve the finalizer's existing no-recovery, fail-before-seal behavior.
  • Bound inventory traversal as files are discovered, give exhaustive review receipts their own explicitly bounded and inventory-derived size limit, and verify even an empty authoritative scope.
  • Make unavailable protected-inventory-root regression coverage deterministic across native Windows drive layouts.
  • Preserve the workbench-authoritative target kind, bind the required digest for committed, range, and working-tree Git diffs, and remove incompatible model-authored coordinates when only one target kind is permitted.
  • Preserve legal colon- and backslash-containing repository filenames through POSIX inventory, candidate normalization, finalization, SARIF, and SDK contract loading without relaxing Windows drive-letter, separator, or portable artifact-path protections.
  • Preserve deep and diff workflows, legacy candidate normalization, non-Git repositories, bounded files, cancellation, and Windows line endings.
  • Preserve current-main managed Codex credential keyrings, the 0.1.4 package release, protected release locks, the high-severity production dependency audit, and the complete Node 22.13/24.0/24/26.0/26 cross-platform package-smoke matrix.

Why

A standard scan cannot honestly claim full coverage if discovery silently omits an inaccessible directory or symbolic link, its bundled instructions regenerate a smaller filtered file list, an explicitly requested scope disappears, built-in exclusions are presented as an empty scope, the model can replace and restore the inventory it actually consumes, or the final coverage omits inventoried files. Likewise, a valid scan must not fail finalization because a model-authored target kind conflicts with the sole target kind permitted by the workbench.

Contributor credit

Builds directly on @createsomethingtoday's thorough scoped-inventory design, real scan reproductions, and singleton target-binding fix in #71. The hardening commit includes the original contributor as an explicit Git co-author and preserves the original standard-workflow and finalizer improvements.

Verification

  • Exact original contributor head: 378 passed, 3 expected skips, 0 failed.
  • Current 0.1.4 base: ab3b91c8b1fc0403d7fd6ae35a3a46f7fb2a470f; exact reviewed head: 6ae935ef00187c12869b5a61af711972400aa48b.
  • CI-pinned Bun 1.3.14 complete regression suite: 502 passed, 6 expected platform/model skips, 0 failed.
  • 22 focused end-to-end security regressions: bundled workflow and strict manual completion; exact native POSIX filename normalization and sealed-contract loading; safe Windows and portable artifact paths; protected Python, direct symlinks, and symlinked parents; immutable verifier execution; post-recovery coverage; split evidence receipts; omitted shared sinks; exact, unique, bidirectionally reconciled candidate outcomes; repository and overlapping requested-dependency scope; disappeared requested paths and symlinks; version-25 database upgrade without replayable-recipe mutation; and fail-closed rejection of corrupted or duplicate persisted exclusions.
  • Security failures were first reproduced against the vulnerable behavior and then retested after each production fix.
  • Independent non-root, capability-dropped, network-disabled Linux regression proves repository, scoped-package, directly selected dependency, and overlapping-scope exclusions in both canonical documents; independently proves persisted scope and symlink exclusions survive a disappearing scope; verifies every omitted file, directory, broken, external, and dependency symlink is explicitly excluded; preserves explicitly requested dependency code while excluding sibling and transitive dependencies; confirms unreadable directories fail before an incomplete inventory can be produced; accepts an actual complete host-verified scope review and normalized candidate; and rejects filtered or deferred-as-complete coverage, forged candidates, unsealed review receipts, and unsafe traversal.
  • The exact 0.1.4 archive passes the complete 179-entry package and 95-file bundled-plugin contracts and two fresh npm consumer installations.
  • Network-disabled Linux/Node 22 customer-image smoke verifies the package version, public CLI, scan and bulk-scan help, JSON metadata, and pinned Codex 0.144.6.
  • Strict package provenance independently validates gitHead=6ae935ef00187c12869b5a61af711972400aa48b and the current ^22.13.0 || ^24.0.0 || ^26.0.0 Node engines.
  • Type generation, typechecking, formatting, production build, high-severity production dependency audit, package provenance, and git diff --check pass.
  • Official exact-head workflows: node-ci 30502627963 (all seven Node/OS jobs passed) and container-ci 30502627900 (Linux amd64 passed).
  • All 39 reviewed threads are resolved, and a fresh exact-head Codex review has been requested. The original contributor PR, fork, review, and comment count are unchanged.

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Comment thread sdk/typescript/src/api.ts
Comment thread sdk/typescript/_bundled_plugin/scripts/generate_rank_input.py Outdated
Comment thread sdk/typescript/src/api.ts Outdated
mldangelo-oai and others added 3 commits July 29, 2026 13:17
Preserve and harden the scoped-inventory design from external PR #71. Keep standard workflow instructions, explicitly selected dependency scopes, both attested inventories, and authoritative target finalization consistent with the released 0.1.3 base.

Co-authored-by: Create Something <micah@createsomething.io>

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Comment thread sdk/typescript/src/api.ts Outdated
Comment thread sdk/typescript/_bundled_plugin/scripts/generate_rank_input.py
Address the fresh exact-head review findings without relying on recoverable snapshot hashes or fragile CLI configuration overrides. Keep the private inventory physically outside configured state, output, and repository roots; fail closed if no safe location exists; and honor manually selected dependency scopes.

Co-authored-by: Create Something <micah@createsomething.io>

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Comment thread sdk/typescript/src/api.ts Outdated
mldangelo-oai and others added 2 commits July 29, 2026 14:54
Verify exhaustive sealed per-file review, candidate scope, and completion against the protected host inventory. Make the fail-closed protected-root regression deterministic across Windows drive layouts.

Co-authored-by: Create Something <micah@createsomething.io>

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Comment thread sdk/typescript/_bundled_plugin/scripts/generate_rank_input.py
Comment thread sdk/typescript/src/api.ts Outdated
Comment thread sdk/typescript/_bundled_plugin/scripts/generate_rank_input.py Outdated
Comment thread sdk/typescript/_bundled_plugin/scripts/generate_rank_input.py Outdated
Comment thread sdk/typescript/src/runtime.ts Outdated
Use the current workbench registration contract and a deterministic unavailable inventory-root fixture on every operating system, including native Windows.

Co-authored-by: Create Something <micah@createsomething.io>

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Comment thread sdk/typescript/_bundled_plugin/scripts/generate_rank_input.py Outdated
Comment thread sdk/typescript/_bundled_plugin/scripts/finalize_scan_contract.py
Comment thread sdk/typescript/src/runtime.ts Outdated
Reconcile candidate outcomes and sealed findings, validate full phase closures and empty scopes, enforce bounded inventory traversal, and execute verification from the isolated plugin copy.

Co-authored-by: Create Something <micah@createsomething.io>

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Comment thread sdk/typescript/src/api.ts Outdated
Comment thread sdk/typescript/_bundled_plugin/scripts/generate_rank_input.py Outdated
Comment thread sdk/typescript/_bundled_plugin/scripts/generate_rank_input.py Outdated
Allow independently bounded exhaustive review receipts, bind the authoritative digest for all Git diff modes, and preserve valid POSIX colon filenames without relaxing Windows path safety. Add failing-first regressions against the real inventory verifier and workbench finalizer.

Co-authored-by: Create Something <micah@createsomething.io>

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Comment thread sdk/typescript/_bundled_plugin/scripts/generate_rank_input.py
Stage the isolated Python verifier outside all model-writable roots before starting a scan. Bind reportable finding CWE, precise locations, severity, confidence, validation evidence, and attack-path closure to the authoritative candidate. Reject coverage surfaces that finalization cannot seal and document the exact durable-artifact mapping.

Co-authored-by: Create Something <micah@createsomething.io>

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Blocking: the new verifier staging breaks the existing standard scan path. The required Linux, macOS, and Windows Node tests all fail with ENOENT for installed-plugin verifier scripts. Fix the staging contract and get the required tests green.

Comment thread sdk/typescript/src/api.ts

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Comment thread sdk/typescript/_bundled_plugin/scripts/generate_rank_input.py
Comment thread sdk/typescript/_bundled_plugin/scripts/normalize_candidates.py Outdated
Comment thread sdk/typescript/_bundled_plugin/scripts/generate_rank_input.py Outdated
Verify sealed candidate and review artifacts again immediately after workbench recovery and before publishing completion. Materialize the actual installed plugin in the injection-resistant prompt fixture so the isolated verifier passes unchanged on Windows, macOS, and Linux.

Co-authored-by: Create Something <micah@createsomething.io>
ianw-oai
ianw-oai previously approved these changes Jul 29, 2026

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Approved. The updated head fixes the installed-plugin test fixture and verifies authoritative coverage again after finalization.

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Comment thread sdk/typescript/_bundled_plugin/scripts/generate_rank_input.py
Validate host-attested inventory paths lexically so disappeared files remain durable deferred coverage, require the associated receipt surface to signal follow-up, and normalize supported list-valued change conditions into the canonical finding schema. Prove each edge case with failing-first real-helper regressions.

Co-authored-by: Create Something <micah@createsomething.io>

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Comment thread sdk/typescript/_bundled_plugin/scripts/generate_rank_input.py Outdated
Comment thread sdk/typescript/src/api.ts
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Seal the exact attested inventory and normalized candidate ledger alongside exhaustive review receipts. Preserve independently reportable child instances, canonical severity fields, escaped-path security, and deferred files after deletion; independently verify every protected input and final finding.

Co-authored-by: Create Something <micah@createsomething.io>

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Comment thread sdk/typescript/_bundled_plugin/skills/security-scan/SKILL.md Outdated
Comment thread sdk/typescript/_bundled_plugin/scripts/generate_rank_input.py Outdated
Reject a Python verifier inside model-writable scan state before starting Codex, bind deferred coverage to its exact validated proof gap, and regression-test protected interpreter, complete sealed provenance, independent child findings, and finalizer recovery.

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Comment thread sdk/typescript/_bundled_plugin/scripts/generate_rank_input.py
…itative-scan-inventory

# Conflicts:
#	sdk/typescript/tests-ts/scan-recovery.test.ts
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@codex review

Please review exact pushed head def1450, including the contributor-attributed authoritative inventory, current-main nested-Git conflict resolution, all upstream CLI changes, and 190 passing focused regression tests.

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@codex review exact head 8dd1f65

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Security review completed. No security issues were found in this pull request.

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@codex review exact head 64efc3e

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@codex review exact head 8ddff07

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@codex review exact head 73500c1

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@codex review exact head fcdd06c

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Your team has set up Codex to review pull requests in this repo. Reviews are triggered when you

  • Open a pull request for review
  • Mark a draft as ready
  • Comment "@codex review".

If Codex has suggestions, it will comment; otherwise it will react with 👍.

Codex can also answer questions or update the PR. Try commenting "@codex address that feedback".

Comment thread sdk/typescript/_bundled_plugin/scripts/generate_rank_input.py Outdated

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💡 Codex Security Review

Here are some automated security review suggestions for this pull request.

Reviewed commit: fcdd06c135

View security finding report

ℹ️ About Codex security reviews in GitHub

This is an experimental Codex feature. Security reviews are triggered when:

  • You comment "@codex security review"
  • A regular code review gets triggered (for example, "@codex review" or when a PR is opened), and you’re opted in so security review runs alongside code review

Once complete, Codex will leave suggestions, or a comment if no findings are found.

Comment thread sdk/typescript/_bundled_plugin/scripts/normalize_candidates.py
@mldangelo-oai

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Collaborator Author

@codex review 843a10f

@chatgpt-codex-connector

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Codex Review: Didn't find any major issues. Hooray!

Reviewed commit: 843a10f001

ℹ️ About Codex in GitHub

Your team has set up Codex to review pull requests in this repo. Reviews are triggered when you

  • Open a pull request for review
  • Mark a draft as ready
  • Comment "@codex review".

If Codex has suggestions, it will comment; otherwise it will react with 👍.

Codex can also answer questions or update the PR. Try commenting "@codex address that feedback".

@chatgpt-codex-connector

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Copy Markdown

Security review completed. No security issues were found in this pull request.

Reviewed commit: 843a10f001

View security finding report

ℹ️ About Codex security reviews in GitHub

This is an experimental Codex feature. Security reviews are triggered when:

  • You comment "@codex security review"
  • A regular code review gets triggered (for example, "@codex review" or when a PR is opened), and you’re opted in so security review runs alongside code review

Once complete, Codex will leave suggestions, or a comment if no findings are found.

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2 participants