modkit dmr compare-tx-sites works only when GTF files have gene and transcript version numbers

[Kilian-Winiger]

Hi!

Thank you for the new features in modkit 0.6.3!

I wanted to report that modkit dmr compare-tx-sites only seems to works when the GTF file used has version numbers in the transcript ID and the gene ID. This is the case for the Gencode annotation file but not for the RefSeq file (no gene version) or the RefSeq-UCSC file (no gene version and no transcript version).
This might be important for some to know if they want to use the program.

[ArtRand]

Hello @Kilian-Winiger,

Thanks for the report. Let me get a version going that has a "default" version for both.