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1. treangenlab/somatem treangenlab/somatem Public

   LLM accessible long-read metagenomics pipeline with best practices

   Python 3

2. myoga myoga Public

   Local visualization of metadata associated with parsnp variant data

   JavaScript

3. mlvamaps mlvamaps Public

   Classic and culture-free MLVA typing from long reads and assemblies.

   Python

4. aln_stats aln_stats Public

   Generate nucleotide alignment statistics from various file types

   Python 1