test branch has 3 versions of inak2005 inak2005 is the orig inak2005a is the one switched to NEURON inegration with cnexp inak2005b is similar to orig but was editing to see if any minor changes made any difference
nrnivmodl # to compile
nrniv -python test.py
Port of Dravet thalamocortical seizure model. For proper results, run with the multiple synapse netpyne version at: https://github.com/jchen6727/netpyne.git (a pull request is pending on the official netpyne development version)
run with python init.py
or with openmpi
mpiexec -n nrniv -python -mpi init.py
a raster plot of the network activity will be in the images directory
raster plot of our results when running on 4 cores:
mpiexec -n 4 nrniv -python -mpi init.py
is located in the images folder as RESULTS.png:
images/RESULTS.png
NOTE IF YOU ARE USING OFFICIAL NETPYNE VERSION:
working with the current dev branch of netpyne will yield different results, as GABA b receptors will be implemented as a single point process instead of multiple point processes.
A raster plot resulting from running with the official netpyne development version (as opposed to the multiple synapse netpyne version) is located in the images folder as RESULTS_DEV.png
images/RESULTS_DEV.png