fixed a couple more capitalizations of ID

src/data/schematic/include_schematic_linkml.Biospecimen.manifest.csv

@@ -1 +1 @@
-Study Code,Participant External ID,Sample Global ID,Sample External ID,Sample Type,Age At Biospecimen Collection,Parent Sample Global Id,Parent Sample External Id,Parent Sample Type,Collection Global ID,Collection External ID,Collection Sample Type,Container Global ID,Container External ID,Volume,Volume Unit,Concentration,Concentration Unit,Laboratory Procedure,Biospecimen Storage,Sample Availability
+Study Code,Participant External ID,Sample Global ID,Sample External ID,Sample Type,Age At Biospecimen Collection,Parent Sample Global ID,Parent Sample External ID,Parent Sample Type,Collection Global ID,Collection External ID,Collection Sample Type,Container Global ID,Container External ID,Volume,Volume Unit,Concentration,Concentration Unit,Laboratory Procedure,Biospecimen Storage,Sample Availability

src/data/schematic/include_schematic_linkml.Biospecimen.schema.json

@@ -4,80 +4,80 @@
   "title": "INCLUDE.Biospecimen.manifest",
   "type": "object",
   "properties": {
-    "Container Global ID": {},
-    "Biospecimen Storage": {},
-    "Sample Global ID": {},
-    "Volume Unit": {},
     "Concentration Unit": {},
+    "Parent Sample Type": {},
+    "Sample External ID": {
+      "not": {
+        "type": "null"
+      },
+      "minLength": 1
+    },
+    "Age At Biospecimen Collection": {},
+    "Laboratory Procedure": {},
+    "Sample Global ID": {},
+    "Participant External ID": {
+      "not": {
+        "type": "null"
+      },
+      "minLength": 1
+    },
+    "Concentration": {},
+    "Collection Sample Type": {},
+    "Biospecimen Storage": {},
+    "Parent Sample Global ID": {},
+    "Container Global ID": {},
+    "Parent Sample External ID": {},
+    "Container External ID": {},
     "Study Code": {
       "enum": [
-        "DS-COG-ALL",
-        "DS-COG-AML",
-        "DSC",
-        "DS-Brain",
+        "DS-ISP",
         "DS-Sleep",
+        "DSC",
+        "ADS",
+        "ECODS",
+        "BRI-DSR",
+        "TRC-DS",
+        "CHARGE-DS",
+        "DS-COG-ALL",
         "DS-PCGC",
-        "DS-ISP",
         "DS360-CHD",
+        "HTP",
+        "DS-COG-AML",
+        "DS-Nexus",
         "BrainPower",
-        "BRI-DSR",
+        "DS-HSAT",
+        "DS-Brain",
+        "X01-Hakon",
         "DS-PALS",
-        "ECODS",
+        "AECOM-DS",
         "ExCEEDS",
         "ABC-DS",
-        "ADS",
-        "DS-DETERMINED",
-        "DS-HSAT",
-        "DS-Nexus",
-        "CHARGE-DS",
-        "TRC-DS",
-        "HTP",
         "X01-deSmith",
-        "X01-Hakon",
-        "AECOM-DS"
+        "DS-DETERMINED"
       ]
     },
-    "Parent Sample Type": {},
-    "Laboratory Procedure": {},
     "Collection Global ID": {},
-    "Parent Sample Global Id": {},
-    "Collection External ID": {},
-    "Volume": {},
-    "Age At Biospecimen Collection": {},
-    "Parent Sample External Id": {},
-    "Sample Type": {
-      "not": {
-        "type": "null"
-      },
-      "minLength": 1
-    },
-    "Container External ID": {},
-    "Sample External ID": {
-      "not": {
-        "type": "null"
-      },
-      "minLength": 1
-    },
-    "Collection Sample Type": {},
     "Sample Availability": {
       "enum": [
-        "Unavailable",
         "Available",
+        "Unavailable",
         ""
       ]
     },
-    "Participant External ID": {
+    "Volume": {},
+    "Sample Type": {
       "not": {
         "type": "null"
       },
       "minLength": 1
     },
-    "Concentration": {}
+    "Volume Unit": {},
+    "Collection External ID": {}
   },
   "required": [
-    "Study Code",
-    "Sample Type",
     "Sample External ID",
-    "Participant External ID"
+    "Participant External ID",
+    "Study Code",
+    "Sample Type"
   ]
 }

src/data/schematic/include_schematic_linkml.Condition.manifest.csv

@@ -1 +1 @@
-Participant External ID,Event Id,Event Type,Condition or Measure Source Text,Age At Condition or Measure Observation,Condition Interpretation,Condition Status,Condition Data Source,HPO Label,HPO Code,MONDO Label,MONDO Code,MAXO Label,MAXO Code,Other Label,Other Code,Measure Value,Measure Unit
+Participant External ID,Event ID,Event Type,Condition or Measure Source Text,Age At Condition or Measure Observation,Condition Interpretation,Condition Status,Condition Data Source,HPO Label,HPO Code,MONDO Label,MONDO Code,MAXO Label,MAXO Code,Other Label,Other Code,Measure Value,Measure Unit

src/data/schematic/include_schematic_linkml.Condition.schema.json

@@ -4,48 +4,48 @@
   "title": "INCLUDE.Condition.manifest",
   "type": "object",
   "properties": {
-    "Age At Condition or Measure Observation": {},
-    "Measure Unit": {},
-    "Event Id": {},
-    "Condition Status": {
-      "enum": [
-        "Resolved",
-        "Current",
-        "History Of",
-        ""
-      ]
-    },
-    "MONDO Code": {},
-    "Other Label": {},
-    "MAXO Label": {},
-    "Condition or Measure Source Text": {},
     "Condition Data Source": {
       "enum": [
-        "Self-reported",
         "Clinical",
+        "Self-reported",
         ""
       ]
     },
-    "MAXO Code": {},
-    "HPO Label": {},
-    "Measure Value": {},
-    "MONDO Label": {},
+    "Condition or Measure Source Text": {},
     "Other Code": {},
     "HPO Code": {},
+    "MONDO Label": {},
+    "MONDO Code": {},
+    "Event Type": {},
+    "MAXO Code": {},
+    "MAXO Label": {},
+    "Event ID": {},
     "Condition Interpretation": {
       "enum": [
         "Observed",
         "Not Observed",
         ""
       ]
     },
+    "Other Label": {},
+    "Measure Value": {},
+    "Measure Unit": {},
+    "HPO Label": {},
+    "Age At Condition or Measure Observation": {},
+    "Condition Status": {
+      "enum": [
+        "Resolved",
+        "Current",
+        "History Of",
+        ""
+      ]
+    },
     "Participant External ID": {
       "not": {
         "type": "null"
       },
       "minLength": 1
-    },
-    "Event Type": {}
+    }
   },
   "required": [
     "Participant External ID"

src/data/schematic/include_schematic_linkml.DataFile.schema.json

@@ -4,95 +4,95 @@
   "title": "INCLUDE.DataFile.manifest",
   "type": "object",
   "properties": {
-    "Data Category": {
+    "File Hash": {},
+    "Publication DOI": {},
+    "Data Type": {},
+    "File External ID": {
       "not": {
         "type": "null"
       },
       "minLength": 1
     },
     "File Global ID": {},
-    "Experimental Strategy": {},
-    "File Size": {},
-    "File Size Unit": {},
-    "Access URL": {},
-    "Study Code": {
+    "Data Access": {
       "enum": [
-        "DS-COG-ALL",
-        "DS-COG-AML",
-        "DSC",
-        "DS-Brain",
-        "DS-Sleep",
-        "DS-PCGC",
-        "DS-ISP",
-        "DS360-CHD",
-        "BrainPower",
-        "BRI-DSR",
-        "DS-PALS",
-        "ECODS",
-        "ExCEEDS",
-        "ABC-DS",
-        "ADS",
-        "DS-DETERMINED",
-        "DS-HSAT",
-        "DS-Nexus",
-        "CHARGE-DS",
-        "TRC-DS",
-        "HTP",
-        "X01-deSmith",
-        "X01-Hakon",
-        "AECOM-DS"
+        "Controlled",
+        "Registered",
+        "Open",
+        ""
       ]
     },
-    "File External ID": {
+    "File Size Unit": {},
+    "Access URL": {},
+    "Data Category": {
       "not": {
         "type": "null"
       },
       "minLength": 1
     },
-    "File Name": {
+    "File Size": {},
+    "File Format": {
       "not": {
         "type": "null"
       },
       "minLength": 1
     },
+    "Experimental Strategy": {},
+    "Experimental Platform": {},
     "Sample External ID": {
       "not": {
         "type": "null"
       },
       "minLength": 1
     },
-    "Data Type": {},
-    "File Hash": {},
-    "Experimental Platform": {},
-    "File Format": {
+    "Study Code": {
+      "enum": [
+        "DS-ISP",
+        "DS-Sleep",
+        "DSC",
+        "ADS",
+        "ECODS",
+        "BRI-DSR",
+        "TRC-DS",
+        "CHARGE-DS",
+        "DS-COG-ALL",
+        "DS-PCGC",
+        "DS360-CHD",
+        "HTP",
+        "DS-COG-AML",
+        "DS-Nexus",
+        "BrainPower",
+        "DS-HSAT",
+        "DS-Brain",
+        "X01-Hakon",
+        "DS-PALS",
+        "AECOM-DS",
+        "ExCEEDS",
+        "ABC-DS",
+        "X01-deSmith",
+        "DS-DETERMINED"
+      ]
+    },
+    "File Name": {
       "not": {
         "type": "null"
       },
       "minLength": 1
     },
-    "Publication DOI": {},
     "Participant External ID": {
       "not": {
         "type": "null"
       },
       "minLength": 1
-    },
-    "Data Access": {
-      "enum": [
-        "Open",
-        "Controlled",
-        "Registered",
-        ""
-      ]
     }
   },
   "required": [
+    "File External ID",
     "Data Category",
+    "File Format",
+    "Sample External ID",
     "Study Code",
-    "File External ID",
     "File Name",
-    "Sample External ID",
-    "File Format",
     "Participant External ID"
   ]
 }