fix(app + tui): clear stale running session indicators

packages/app/src/context/global-sync/bootstrap.ts

@@ -151,7 +151,7 @@ export async function bootstrapDirectory(input: {
   Promise.all([
     input.sdk.path.get().then((x) => input.setStore("path", x.data!)),
     input.sdk.command.list().then((x) => input.setStore("command", x.data ?? [])),
-    input.sdk.session.status().then((x) => input.setStore("session_status", x.data!)),
+    input.sdk.session.status().then((x) => input.setStore("session_status", reconcile(x.data!))),
     input.loadSessions(input.directory),
     input.sdk.mcp.status().then((x) => input.setStore("mcp", x.data!)),
     input.sdk.lsp.status().then((x) => input.setStore("lsp", x.data!)),

packages/app/src/pages/layout/sidebar-items.tsx

@@ -204,18 +204,8 @@ export const SessionItem = (props: SessionItemProps): JSX.Element => {
   })
   const isWorking = createMemo(() => {
     if (hasPermissions()) return false
-    const pending = (sessionStore.message[props.session.id] ?? []).findLast(
-      (message) =>
-        message.role === "assistant" &&
-        typeof (message as { time?: { completed?: unknown } }).time?.completed !== "number",
-    )
     const status = sessionStore.session_status[props.session.id]
-    return (
-      pending !== undefined ||
-      status?.type === "busy" ||
-      status?.type === "retry" ||
-      (status !== undefined && status.type !== "idle")
-    )
+    return status !== undefined && status.type !== "idle"
   })
 
   const tint = createMemo(() => {

packages/app/src/pages/session.tsx

@@ -1361,10 +1361,8 @@ export default function Page() {
     })
 
   const busy = (sessionID: string) => {
-    if ((sync.data.session_status[sessionID] ?? { type: "idle" as const }).type !== "idle") return true
-    return (sync.data.message[sessionID] ?? []).some(
-      (item) => item.role === "assistant" && typeof item.time.completed !== "number",
-    )
+    const status = sync.data.session_status[sessionID]
+    return status !== undefined && status.type !== "idle"
   }
 
   const queuedFollowups = createMemo(() => {

packages/app/src/pages/session/message-timeline.tsx

@@ -236,17 +236,17 @@ export function MessageTimeline(props: {
     if (!id) return emptyMessages
     return sync.data.message[id] ?? emptyMessages
   })
-  const pending = createMemo(() =>
-    sessionMessages().findLast(
-      (item): item is AssistantMessage => item.role === "assistant" && typeof item.time.completed !== "number",
-    ),
-  )
+  const assistant = createMemo(() => {
+    const item = sessionMessages().findLast((item): item is AssistantMessage => item.role === "assistant")
+    if (!item || typeof item.time.completed === "number") return
+    return item
+  })
   const sessionStatus = createMemo(() => {
     const id = sessionID()
     if (!id) return idle
     return sync.data.session_status[id] ?? idle
   })
-  const working = createMemo(() => !!pending() || sessionStatus().type !== "idle")
+  const busy = createMemo(() => sessionStatus().type !== "idle")
   const tint = createMemo(() => messageAgentColor(sessionMessages(), sync.data.agent))
 
   const [slot, setSlot] = createStore({
@@ -264,7 +264,7 @@ export function MessageTimeline(props: {
   onCleanup(clear)
   createEffect(
     on(
-      working,
+      busy,
       (on, prev) => {
         clear()
         if (on) {
@@ -282,23 +282,20 @@ export function MessageTimeline(props: {
     ),
   )
   const activeMessageID = createMemo(() => {
-    const parentID = pending()?.parentID
+    if (!busy()) return undefined
+
+    const parentID = assistant()?.parentID
     if (parentID) {
       const messages = sessionMessages()
       const result = Binary.search(messages, parentID, (message) => message.id)
       const message = result.found ? messages[result.index] : messages.find((item) => item.id === parentID)
       if (message && message.role === "user") return message.id
     }
 
-    const status = sessionStatus()
-    if (status.type !== "idle") {
-      const messages = sessionMessages()
-      for (let i = messages.length - 1; i >= 0; i--) {
-        if (messages[i].role === "user") return messages[i].id
-      }
+    const messages = sessionMessages()
+    for (let i = messages.length - 1; i >= 0; i--) {
+      if (messages[i].role === "user") return messages[i].id
     }
-
-    return undefined
   })
   const info = createMemo(() => {
     const id = sessionID()

packages/opencode/src/cli/cmd/tui/routes/session/index.tsx

@@ -139,7 +139,9 @@ export function Session() {
   })
 
   const pending = createMemo(() => {
-    return messages().findLast((x) => x.role === "assistant" && !x.time.completed)?.id
+    const last = messages().findLast((x) => x.role === "assistant")
+    if (!last || last.time.completed) return
+    return last.id
   })
 
   const lastAssistant = createMemo(() => {

packages/opencode/src/session/assistant.ts

@@ -0,0 +1,7 @@
+import { MessageV2 } from "./message-v2"
+
+export const done = (msg: MessageV2.Assistant, time = Date.now()) => {
+  if (typeof msg.time.completed === "number") return msg
+  msg.time.completed = time
+  return msg
+}

packages/opencode/src/session/processor.ts

@@ -14,6 +14,7 @@ import { Config } from "@/config/config"
 import { SessionCompaction } from "./compaction"
 import { PermissionNext } from "@/permission"
 import { Question } from "@/question"
+import { done } from "./assistant"
 import { PartID } from "./schema"
 import type { SessionID, MessageID } from "./schema"
 
@@ -416,7 +417,7 @@ export namespace SessionProcessor {
               })
             }
           }
-          input.assistantMessage.time.completed = Date.now()
+          done(input.assistantMessage)
           await Session.updateMessage(input.assistantMessage)
           if (needsCompaction) return "compact"
           if (blocked) return "stop"

packages/opencode/src/session/prompt.ts

@@ -4,6 +4,7 @@ import fs from "fs/promises"
 import z from "zod"
 import { Filesystem } from "../util/filesystem"
 import { SessionID, MessageID, PartID } from "./schema"
+import { done } from "./assistant"
 import { MessageV2 } from "./message-v2"
 import { Log } from "../util/log"
 import { SessionRevert } from "./revert"
@@ -465,7 +466,7 @@ export namespace SessionPrompt {
           result,
         )
         assistantMessage.finish = "tool-calls"
-        assistantMessage.time.completed = Date.now()
+        done(assistantMessage)
         await Session.updateMessage(assistantMessage)
         if (result && part.state.status === "running") {
           await Session.updatePart({
@@ -599,91 +600,100 @@ export namespace SessionPrompt {
       })
       using _ = defer(() => InstructionPrompt.clear(processor.message.id))
 
-      // Check if user explicitly invoked an agent via @ in this turn
-      const lastUserMsg = msgs.findLast((m) => m.info.role === "user")
-      const bypassAgentCheck = lastUserMsg?.parts.some((p) => p.type === "agent") ?? false
-
-      const tools = await resolveTools({
-        agent,
-        session,
-        model,
-        tools: lastUser.tools,
-        processor,
-        bypassAgentCheck,
-        messages: msgs,
-      })
+      const format = lastUser.format ?? { type: "text" }
+      const result = await (async () => {
+        const lastUserMsg = msgs.findLast((m) => m.info.role === "user")
+        const bypassAgentCheck = lastUserMsg?.parts.some((p) => p.type === "agent") ?? false
 
-      // Inject StructuredOutput tool if JSON schema mode enabled
-      if (lastUser.format?.type === "json_schema") {
-        tools["StructuredOutput"] = createStructuredOutputTool({
-          schema: lastUser.format.schema,
-          onSuccess(output) {
-            structuredOutput = output
-          },
+        const tools = await resolveTools({
+          agent,
+          session,
+          model,
+          tools: lastUser.tools,
+          processor,
+          bypassAgentCheck,
+          messages: msgs,
         })
-      }
 
-      if (step === 1) {
-        SessionSummary.summarize({
-          sessionID: sessionID,
-          messageID: lastUser.id,
-        })
-      }
+        if (format.type === "json_schema") {
+          tools["StructuredOutput"] = createStructuredOutputTool({
+            schema: format.schema,
+            onSuccess(output) {
+              structuredOutput = output
+            },
+          })
+        }
 
-      // Ephemerally wrap queued user messages with a reminder to stay on track
-      if (step > 1 && lastFinished) {
-        for (const msg of msgs) {
-          if (msg.info.role !== "user" || msg.info.id <= lastFinished.id) continue
-          for (const part of msg.parts) {
-            if (part.type !== "text" || part.ignored || part.synthetic) continue
-            if (!part.text.trim()) continue
-            part.text = [
-              "<system-reminder>",
-              "The user sent the following message:",
-              part.text,
-              "",
-              "Please address this message and continue with your tasks.",
-              "</system-reminder>",
-            ].join("\n")
+        if (step === 1) {
+          SessionSummary.summarize({
+            sessionID: sessionID,
+            messageID: lastUser.id,
+          })
+        }
+
+        if (step > 1 && lastFinished) {
+          for (const msg of msgs) {
+            if (msg.info.role !== "user" || msg.info.id <= lastFinished.id) continue
+            for (const part of msg.parts) {
+              if (part.type !== "text" || part.ignored || part.synthetic) continue
+              if (!part.text.trim()) continue
+              part.text = [
+                "<system-reminder>",
+                "The user sent the following message:",
+                part.text,
+                "",
+                "Please address this message and continue with your tasks.",
+                "</system-reminder>",
+              ].join("\n")
+            }
           }
         }
-      }
 
-      await Plugin.trigger("experimental.chat.messages.transform", {}, { messages: msgs })
+        await Plugin.trigger("experimental.chat.messages.transform", {}, { messages: msgs })
 
-      // Build system prompt, adding structured output instruction if needed
-      const skills = await SystemPrompt.skills(agent)
-      const system = [
-        ...(await SystemPrompt.environment(model)),
-        ...(skills ? [skills] : []),
-        ...(await InstructionPrompt.system()),
-      ]
-      const format = lastUser.format ?? { type: "text" }
-      if (format.type === "json_schema") {
-        system.push(STRUCTURED_OUTPUT_SYSTEM_PROMPT)
-      }
+        const skills = await SystemPrompt.skills(agent)
+        const system = [
+          ...(await SystemPrompt.environment(model)),
+          ...(skills ? [skills] : []),
+          ...(await InstructionPrompt.system()),
+        ]
+        if (format.type === "json_schema") {
+          system.push(STRUCTURED_OUTPUT_SYSTEM_PROMPT)
+        }
 
-      const result = await processor.process({
-        user: lastUser,
-        agent,
-        permission: session.permission,
-        abort,
-        sessionID,
-        system,
-        messages: [
-          ...MessageV2.toModelMessages(msgs, model),
-          ...(isLastStep
-            ? [
-                {
-                  role: "assistant" as const,
-                  content: MAX_STEPS,
-                },
-              ]
-            : []),
-        ],
-        tools,
-        model,
-        toolChoice: format.type === "json_schema" ? "required" : undefined,
+        return processor.process({
+          user: lastUser,
+          agent,
+          permission: session.permission,
+          abort,
+          sessionID,
+          system,
+          messages: [
+            ...MessageV2.toModelMessages(msgs, model),
+            ...(isLastStep
+              ? [
+                  {
+                    role: "assistant" as const,
+                    content: MAX_STEPS,
+                  },
+                ]
+              : []),
+          ],
+          tools,
+          model,
+          toolChoice: format.type === "json_schema" ? "required" : undefined,
+        })
+      })().catch(async (err) => {
+        if (typeof processor.message.time.completed !== "number") {
+          await Session.updateMessage(done(processor.message)).catch((cause) => {
+            log.error("failed to finalize assistant after prompt error", {
+              cause,
+              messageID: processor.message.id,
+              sessionID,
+            })
+          })
+        }
+        throw err
       })
 
       // If structured output was captured, save it and exit immediately
@@ -1723,7 +1733,7 @@ NOTE: At any point in time through this workflow you should feel free to ask the
     if (aborted) {
       output += "\n\n" + ["<metadata>", "User aborted the command", "</metadata>"].join("\n")
     }
-    msg.time.completed = Date.now()
+    done(msg)
     await Session.updateMessage(msg)
     if (part.state.status === "running") {
       part.state = {

packages/opencode/test/session/assistant.test.ts

@@ -0,0 +1,44 @@
+import { describe, expect, test } from "bun:test"
+import { ModelID, ProviderID } from "../../src/provider/schema"
+import { done } from "../../src/session/assistant"
+import type { MessageV2 } from "../../src/session/message-v2"
+import { SessionID } from "../../src/session/schema"
+
+const sessionID = SessionID.make("session")
+const providerID = ProviderID.make("test")
+const modelID = ModelID.make("model")
+
+const assistant = (completed?: number) =>
+  ({
+    id: "msg_1",
+    sessionID,
+    parentID: "msg_0",
+    role: "assistant",
+    time: completed === undefined ? { created: 1 } : { created: 1, completed },
+    mode: "build",
+    agent: "build",
+    path: { cwd: "/", root: "/" },
+    cost: 0,
+    tokens: {
+      input: 0,
+      output: 0,
+      reasoning: 0,
+      cache: { read: 0, write: 0 },
+    },
+    modelID,
+    providerID,
+  }) as MessageV2.Assistant
+
+describe("session assistant", () => {
+  test("marks incomplete assistants as done", () => {
+    const msg = assistant()
+
+    expect(done(msg, 10).time.completed).toBe(10)
+  })
+
+  test("preserves existing completion time", () => {
+    const msg = assistant(5)
+
+    expect(done(msg, 10).time.completed).toBe(5)
+  })
+})