CellProfiler Demonstrations

Demonstrating various CellProfiler development or implementations.

Development

Perform the following steps to setup a Python development environment.

1. Install Python (we recommend using pyenv or similar)
2. Install uv
3. Install the environment: uv sync

Running Tasks

We use Poe the Poet for processing various tasks within this repo. Poe the Poet is included as an environment dependency and may be used as follows:

# show existing tasks
uv run poe

# run a specific task
uv run poe <task name>