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wget is an optional requirement

Status: Open.

#82 In StevenWingett/FastQ-Screen;

· fbnrst opened on Jul 5, 2025

fastq_screen --get_genomes fails

Status: Open.

#81 In StevenWingett/FastQ-Screen;

· fbnrst opened on Jul 5, 2025

Interpreting ribosomal RNA contamination

Status: Open.

#77 In StevenWingett/FastQ-Screen;

· PietroD opened on Nov 14, 2024

no minimap2 index was found

Status: Open.

#76 In StevenWingett/FastQ-Screen;

· johnstonmj opened on Nov 6, 2024

FastQ-Screen does not recognize BWA index file with ".64" extension

Status: Open.

#75 In StevenWingett/FastQ-Screen;

· LauraEgolf opened on Oct 10, 2024

fastq screen is not screening against the added genome

Status: Open.

#73 In StevenWingett/FastQ-Screen;

· Ayush09-cmd opened on Sep 12, 2024

Doesn't match if U nucleotide used in sequence

Status: Open.

#68 In StevenWingett/FastQ-Screen;

· keenhl opened on Feb 26, 2024

Filtering bisulfite fastq files

Status: Open.

#63 In StevenWingett/FastQ-Screen;

· amsparks opened on Jul 26, 2023

Using pigz for parallel gzip operations

Status: Open.

#58 In StevenWingett/FastQ-Screen;

· JoshLoecker opened on Nov 4, 2022

Processing very long reads

enhancementNew feature or requestNew feature or request

priorityDo this sooner rather than laterDo this sooner rather than later

Status: Open.

#34 In StevenWingett/FastQ-Screen;

· StevenWingett opened on Nov 11, 2020

Message when passed non-valid path to bowtie2

Could do betterNot actually a bug per se, but a fix is required here to make the program more elegantNot actually a bug per se, but a fix is required here to make the program more elegant

Status: Open.

#33 In StevenWingett/FastQ-Screen;

· StevenWingett opened on Oct 22, 2020

rRNA genome

enhancementNew feature or requestNew feature or request

Status: Open.

#30 In StevenWingett/FastQ-Screen;

· StevenWingett opened on Sep 24, 2020