varlen maba

[oleksost]

Varlen mamba to enable packing.

• add test

🔍 Type of change

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• 🐛 Bug fix (non-breaking change that addresses a specific issue)
• 🚀 New feature (non-breaking change that adds functionality)
• ⚠️ Breaking change (a change that could affect existing functionality)
• 📈 Performance improvement/optimization (improves speed, memory usage, or efficiency)
• 🛠️ Code refactor (non-functional changes that improve code readability, structure, etc.)
• 📦 Dependency bump (updates dependencies, including Dockerfile or package changes)
• 📝 Documentation change (updates documentation, including new content or typo fixes)
• 🔧 Infrastructure/Build change (affects build process, CI/CD, or dependencies)

📝 Changes

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1. Change A
2. Change B

✅ Checklist

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General

• 📜 I have read and followed the contributing guidelines.
• 🏷️ I am using a clear and descriptive PR title that summarizes the key change or feature introduced.
• 🎉 The functionality is complete, and I have tested the changes.
• 📝 I have updated the documentation if needed.
• ⚠️ The change does not introduce any new issues (e.g., runtime warnings, type checker errors, linting problems, unhandled edge cases).
• 🧩 I have commented my code, especially in hard-to-understand areas.

Dependencies and Configuration

• 🐋 I have updated the Docker configuration or dependencies, if applicable.
• 🔄 I have ensured compatibility with the existing setup after dependency changes.

Testing

• 🧪 I have added or updated tests to cover my changes.
• ✔️ New and existing tests pass locally with my changes.
• 🚦 I have tested these changes on GPUs and verified training stability.
• 🏋️ I have tested the changes on realistic training workloads, if applicable.

Performance Impact

• 📊 I have run benchmarks where applicable to evaluate the performance impact.
• ✅ The benchmarks show no performance regression.
• 🚀 The benchmarks indicate a potential performance improvement.
• ⚠️ The benchmarks indicate a potential performance degradation.
• 📈 I have provided benchmark results and detailed any performance impact below, if applicable.

📊 Performance Impact Details

If there is any impact on performance, describe it and provide benchmark results, if applicable:

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🗒️ Additional Notes

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[oleksost]

@RaymondLi0 if you have some time to double check this

[tscholak]

Approach looks great!

[RaymondLi0]

Thanks for looking into this! Added a few comments, otherwise LGTM

[RaymondLi0]

Maybe throw an error here if cu_seqlens is not None, saying that this version of mamba does not support varlen inputs

[RaymondLi0]

let's call this file preprocessing.py to follow other layers

[RaymondLi0]

if TransformerKwargs.sequence_lengths not in kwargs, there is nothing to do.
(iiuc this is the case when cross_document_attention is set to True.)

[RaymondLi0]

Suggested change

	if "cu_seqlens" in kwargs:
	if TransformerKwargs.cu_seqlens in kwargs: