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Update ketoenol template image to 1,3 sigmatropic rearrangement#2219

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xiaoruiDong merged 1 commit into
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update_ketoenol_to_1,3_sigmatropic_rearrangement
Oct 19, 2021
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Update ketoenol template image to 1,3 sigmatropic rearrangement#2219
xiaoruiDong merged 1 commit into
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update_ketoenol_to_1,3_sigmatropic_rearrangement

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@kspieks

@kspieks kspieks commented Oct 19, 2021

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This RMG-database PR broadens the reaction template of our keto-enol reaction family so that it is now represented as 1,3 sigmatropic rearrangement (which includes keto-enol reactions as well as others). This minor PR updates the corresponding reaction template images in the RMG-Py documentation.

@amarkpayne amarkpayne left a comment

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One minor missing file, but otherwise this looks good to go. Go ahead and push the update and I'll merge this in. Thanks for the PR @kspieks !

Comment on lines +238 to +239
.. |f75| image:: images/kinetics_families/1,3_sigmatropic_rearrangement.png
:scale: 40%

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Can you add the image to the RMG-Py repo at the location above?

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Also, delete the ketoenol image

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Sorry about that. Not sure what happened but searching for "ketoenol" in PyCharm didn't show those files for me. I wasn't masking by .py files (but I should've still looked for the images whoops). Pushed an updated commit that adds the 1,3 sigmatropic rearrangement image and removes the ketoenol image. Thanks for catching those mistakes!

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No worries! It is interesting that we store these pictures in both repositories instead of just one

Also update the number of RMG reaction templates
@kspieks kspieks force-pushed the update_ketoenol_to_1,3_sigmatropic_rearrangement branch from 80bbbd8 to 9223102 Compare October 19, 2021 01:37
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codecov Bot commented Oct 19, 2021

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Codecov Report

Merging #2219 (9223102) into main (b982dc7) will increase coverage by 0.03%.
The diff coverage is n/a.

Impacted file tree graph

@@            Coverage Diff             @@
##             main    #2219      +/-   ##
==========================================
+ Coverage   47.17%   47.20%   +0.03%     
==========================================
  Files         104      104              
  Lines       27706    27706              
  Branches     7133     7133              
==========================================
+ Hits        13071    13080       +9     
+ Misses      13227    13219       -8     
+ Partials     1408     1407       -1     
Impacted Files Coverage Δ
arkane/kinetics.py 12.24% <0.00%> (ø)
rmgpy/molecule/draw.py 52.74% <0.00%> (+0.77%) ⬆️

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@xiaoruiDong xiaoruiDong merged commit 5a0f180 into main Oct 19, 2021
@xiaoruiDong xiaoruiDong deleted the update_ketoenol_to_1,3_sigmatropic_rearrangement branch October 19, 2021 04:29
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3 participants