4258 Add TCIA dataset#4610
Merged
Merged
Conversation
Signed-off-by: Yiheng Wang <vennw@nvidia.com>
Signed-off-by: Yiheng Wang <vennw@nvidia.com>
Signed-off-by: Yiheng Wang <vennw@nvidia.com>
Signed-off-by: Yiheng Wang <vennw@nvidia.com>
Signed-off-by: Yiheng Wang <vennw@nvidia.com>
Signed-off-by: Yiheng Wang <vennw@nvidia.com>
Signed-off-by: Yiheng Wang <vennw@nvidia.com>
Signed-off-by: Yiheng Wang <vennw@nvidia.com>
Signed-off-by: Yiheng Wang <vennw@nvidia.com>
Signed-off-by: Yiheng Wang <vennw@nvidia.com>
…I into 4258-add-tciadataset
Contributor
Author
wyli
reviewed
Jul 13, 2022
Co-authored-by: Wenqi Li <831580+wyli@users.noreply.github.com> Signed-off-by: Yiheng Wang <vennw@nvidia.com>
3a591ac to
7638b22
Compare
Signed-off-by: Yiheng Wang <vennw@nvidia.com>
Signed-off-by: Yiheng Wang <vennw@nvidia.com>
Signed-off-by: Yiheng Wang <vennw@nvidia.com>
Signed-off-by: Yiheng Wang <vennw@nvidia.com>
wyli
reviewed
Jul 18, 2022
Signed-off-by: Yiheng Wang <vennw@nvidia.com>
…I into 4258-add-tciadataset
Contributor
Author
|
/black |
Signed-off-by: monai-bot <monai.miccai2019@gmail.com>
Signed-off-by: Wenqi Li <wenqil@nvidia.com>
Signed-off-by: Yiheng Wang <vennw@nvidia.com>
wyli
approved these changes
Jul 19, 2022
Contributor
|
/black |
Contributor
|
/build |
Signed-off-by: Wenqi Li <wenqil@nvidia.com>
Contributor
|
/black |
Signed-off-by: Yiheng Wang <vennw@nvidia.com>
…I into 4258-add-tciadataset
Signed-off-by: Wenqi Li <wenqil@nvidia.com>
Contributor
|
/build |
ericspod
reviewed
Jul 19, 2022
Signed-off-by: Wenqi Li <wenqil@nvidia.com>
Contributor
|
/build |
Closed
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
4 participants
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
Signed-off-by: Yiheng Wang vennw@nvidia.com
Fixes #4258 .
Description
This PR is used to:
TciaDataset, which is able to download and data from TCIA.PydicomReaderto support load dicom data with modality "SEG"Dataset download and load images
I've tested with the following collections with
seg_type = "SEG":Also tested with the following collections with
seg_type = "RTSTRUCT":load "SEG" data
For collections that contain modality "SEG", if tag "PerFrameFunctionalGroupsSequence" exists for each frame of the dicom file, the reader is able to load the data (this method refers to: Highdicom ). Therefore, for the collections with
seg_type = "SEG"mentioned above, some of them cannot be recognized:Status
Ready
progresses:
Types of changes
./runtests.sh -f -u --net --coverage../runtests.sh --quick --unittests --disttests.make htmlcommand in thedocs/folder.