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4451 adds testing file downloading #4452

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Merged
wyli merged 2 commits into from
Jun 4, 2022
Merged

4451 adds testing file downloading #4452

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261cf72
adds download link
wyli Jun 3, 2022
f4c93a5
Merge branch 'dev' into fixes-4451
wyli Jun 3, 2022
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13 changes: 10 additions & 3 deletions tests/test_masked_patch_wsi_dataset.py
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Original file line number Diff line number Diff line change
Expand Up @@ -18,14 +18,14 @@

from monai.data import MaskedPatchWSIDataset
from monai.utils import WSIPatchKeys, optional_import, set_determinism
from tests.utils import testing_data_config
from tests.utils import download_url_or_skip_test, testing_data_config

set_determinism(0)

cucim, has_cucim = optional_import("cucim")
has_cucim = has_cucim and hasattr(cucim, "CuImage")
openslide, has_osl = optional_import("openslide")
imwrite, has_tiff = optional_import("tifffile", name="imwrite")
_, has_osl = optional_import("openslide")
_, has_tiff = optional_import("tifffile", name="imwrite")
_, has_codec = optional_import("imagecodecs")
has_tiff = has_tiff and has_codec

Expand All @@ -48,6 +48,13 @@
]


@skipUnless(has_cucim or has_osl or has_tiff, "Requires cucim, openslide, or tifffile!")
def setUpModule(): # noqa: N802
hash_type = testing_data_config("images", FILE_KEY, "hash_type")
hash_val = testing_data_config("images", FILE_KEY, "hash_val")
download_url_or_skip_test(FILE_URL, FILE_PATH, hash_type=hash_type, hash_val=hash_val)


class MaskedPatchWSIDatasetTests:
class Tests(unittest.TestCase):
backend = None
Expand Down