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3370 option of zip_longest to decollate#3373

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wyli merged 6 commits into
Project-MONAI:devfrom
wyli:zip-longest
Nov 22, 2021
Merged

3370 option of zip_longest to decollate#3373
wyli merged 6 commits into
Project-MONAI:devfrom
wyli:zip-longest

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@wyli

@wyli wyli commented Nov 19, 2021 •
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Signed-off-by: Wenqi Li wenqil@nvidia.com

Fixes #3370

Description

defaults to pad the to batch data to be decollated when the items suggest different batch sizes.

Status

Ready

Types of changes

  • Non-breaking change (fix or new feature that would not break existing functionality).
  • Breaking change (fix or new feature that would cause existing functionality to change).
  • New tests added to cover the changes.
  • Integration tests passed locally by running ./runtests.sh -f -u --net --coverage.
  • Quick tests passed locally by running ./runtests.sh --quick --unittests.
  • In-line docstrings updated.
  • Documentation updated, tested make html command in the docs/ folder.

@wyli wyli mentioned this pull request Nov 19, 2021
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@wyli
option to zip_longest
1330f2f 
Signed-off-by: Wenqi Li <wenqil@nvidia.com>
wyli added 4 commits November 20, 2021 01:40
@wyli
Merge remote-tracking branch 'upstream/dev' into zip-longest
3e8a38b 
Signed-off-by: Wenqi Li <wenqil@nvidia.com>
@wyli
adds a pad option
b5c1bbb 
Signed-off-by: Wenqi Li <wenqil@nvidia.com>
@wyli
Merge branch 'dev' into zip-longest
8c5c581
@wyli
fixes batch size
b03ca45 
Signed-off-by: Wenqi Li <wenqil@nvidia.com>
@wyli wyli requested review from Nic-Ma, ericspod and rijobro November 20, 2021 15:18
@wyli wyli marked this pull request as ready for review November 20, 2021 15:18
@wyli

wyli commented Nov 20, 2021

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/build

Nic-Ma
Nic-Ma reviewed Nov 21, 2021
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Comment thread monai/transforms/inverse_batch_transform.py
Nic-Ma
Nic-Ma reviewed Nov 21, 2021
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Comment thread monai/data/utils.py
@wyli wyli requested a review from Nic-Ma November 21, 2021 13:27
@wyli
update based on comments
25d3c24 
Signed-off-by: Wenqi Li <wenqil@nvidia.com>
@wyli

wyli commented Nov 21, 2021

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/build

@Nic-Ma

Nic-Ma commented Nov 21, 2021

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/integration-test

@Nic-Ma

Nic-Ma commented Nov 21, 2021 •
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Hi @wyli ,

Seems /integration-test doesn't work properly?
Let's try to run integration tests to double confirm it.

Thanks.

@Nic-Ma

Nic-Ma commented Nov 22, 2021

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/integration-test

@wyli wyli merged commit 37930a9 into Project-MONAI:dev Nov 22, 2021
@wyli wyli deleted the zip-longest branch November 22, 2021 08:47
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@Nic-Ma Nic-Ma Nic-Ma approved these changes
@ericspod ericspod Awaiting requested review from ericspod ericspod is a code owner
@rijobro rijobro Awaiting requested review from rijobro

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decollate_batch return an empty list

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@wyli @Nic-Ma