Skip to content

Save image print log #2237

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Merged
rijobro merged 1 commit into from
May 24, 2021
Merged

Save image print log #2237

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
1 commit
Select commit
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
4 changes: 4 additions & 0 deletions monai/transforms/io/array.py
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -223,6 +223,7 @@ class SaveImage(Transform):
output_dir: /output,
data_root_dir: /foo/bar,
output will be: /output/test1/image/image_seg.nii.gz
print_log: whether to print log about the saved file path, etc. default to `True`.

"""

Expand All @@ -240,6 +241,7 @@ def __init__(
save_batch: bool = False,
squeeze_end_dims: bool = True,
data_root_dir: str = "",
print_log: bool = True,
) -> None:
self.saver: Union[NiftiSaver, PNGSaver]
if output_ext in (".nii.gz", ".nii"):
Expand All @@ -254,6 +256,7 @@ def __init__(
output_dtype=output_dtype,
squeeze_end_dims=squeeze_end_dims,
data_root_dir=data_root_dir,
print_log=print_log,
)
elif output_ext == ".png":
self.saver = PNGSaver(
Expand All @@ -264,6 +267,7 @@ def __init__(
mode=InterpolateMode(mode),
scale=scale,
data_root_dir=data_root_dir,
print_log=print_log,
)
else:
raise ValueError(f"unsupported output extension: {output_ext}.")
Expand Down
3 changes: 3 additions & 0 deletions monai/transforms/io/dictionary.py
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -199,6 +199,7 @@ class SaveImaged(MapTransform):
output_dir: /output,
data_root_dir: /foo/bar,
output will be: /output/test1/image/image_seg.nii.gz
print_log: whether to print log about the saved file path, etc. default to `True`.

"""

Expand All @@ -220,6 +221,7 @@ def __init__(
allow_missing_keys: bool = False,
squeeze_end_dims: bool = True,
data_root_dir: str = "",
print_log: bool = True,
) -> None:
super().__init__(keys, allow_missing_keys)
self.meta_keys = ensure_tuple_rep(meta_keys, len(self.keys))
Expand All @@ -237,6 +239,7 @@ def __init__(
save_batch=save_batch,
squeeze_end_dims=squeeze_end_dims,
data_root_dir=data_root_dir,
print_log=print_log,
)

def __call__(self, data):
Expand Down