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1412 local normalized cross correlation#1415

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wyli merged 14 commits into
Project-MONAI:masterfrom
kate-sann5100:1412-local-normalized-cross-correlation
Jan 10, 2021
Merged

1412 local normalized cross correlation#1415
wyli merged 14 commits into
Project-MONAI:masterfrom
kate-sann5100:1412-local-normalized-cross-correlation

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@kate-sann5100

@kate-sann5100 kate-sann5100 commented Jan 7, 2021

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Fixes # 1412.

Description

A few sentences describing the changes proposed in this pull request.

Status

Ready/Work in progress/Hold

Types of changes

  • Non-breaking change (fix or new feature that would not break existing functionality).
  • Breaking change (fix or new feature that would cause existing functionality to change).
  • New tests added to cover the changes.
  • Integration tests passed locally by running ./runtests.sh --codeformat --coverage.
  • Quick tests passed locally by running ./runtests.sh --quick.
  • In-line docstrings updated.
  • Documentation updated, tested make html command in the docs/ folder.

Signed-off-by: kate-sann5100 <yiwen.li@st-annes.ox.ac.uk>
Signed-off-by: kate-sann5100 <yiwen.li@st-annes.ox.ac.uk>
Signed-off-by: kate-sann5100 <yiwen.li@st-annes.ox.ac.uk>

@wyli wyli left a comment

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many thanks! I put some minor comments inline

Comment thread tests/test_local_normalized_cross_correlation_loss.py
Comment thread tests/test_local_normalized_cross_correlation_loss.py Outdated
Comment thread monai/losses/image_dissimilarity.py Outdated
Comment thread monai/losses/image_dissimilarity.py Outdated
Comment thread monai/losses/image_dissimilarity.py
Comment thread monai/losses/image_dissimilarity.py Outdated
Comment thread monai/losses/image_dissimilarity.py Outdated
kate-sann5100 and others added 5 commits January 7, 2021 15:00
Signed-off-by: kate-sann5100 <yiwen.li@st-annes.ox.ac.uk>
Signed-off-by: kate-sann5100 <yiwen.li@st-annes.ox.ac.uk>
Signed-off-by: kate-sann5100 <yiwen.li@st-annes.ox.ac.uk>
Signed-off-by: kate-sann5100 <yiwen.li@st-annes.ox.ac.uk>
@kate-sann5100 kate-sann5100 changed the title [WIP]1412 local normalized cross correlation 1412 local normalized cross correlation Jan 9, 2021
kate-sann5100 and others added 2 commits January 9, 2021 03:02
Signed-off-by: kate-sann5100 <yiwen.li@st-annes.ox.ac.uk>
Signed-off-by: Wenqi Li <wenqil@nvidia.com>

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thanks!

Comment thread monai/losses/image_dissimilarity.py Outdated
Comment thread monai/losses/image_dissimilarity.py Outdated
Comment thread monai/losses/image_dissimilarity.py
Comment thread monai/losses/image_dissimilarity.py

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Suggested some refactoring and raised errors should be covered in the tests.
But not sure if we need to mention potential errors in docstring, it'd be better to do so.

Signed-off-by: kate-sann5100 <yiwen.li@st-annes.ox.ac.uk>
…elation' into 1412-local-normalized-cross-correlation
Signed-off-by: kate-sann5100 <yiwen.li@st-annes.ox.ac.uk>
@wyli wyli merged commit 1544d0c into Project-MONAI:master Jan 10, 2021
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5 participants