updated wakhan#166
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Pull request overview
Updates the local wakhan Nextflow module to use the Biocontainers/Galaxy Depot images for Wakhan 0.4.3 and updates the emitted module version metadata accordingly.
Changes:
- Bump WAKHAN container image from
0.4.2to0.4.3(Singularity Depot + Docker Biocontainers). - Update the manually-emitted
versions_wakhanvalue from0.4.2to0.4.3.
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| conda "${moduleDir}/environment.yml" | ||
| container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? | ||
| 'robertaforsyth/wakhan:0.4.2_iss58': | ||
| 'docker://robertaforsyth/wakhan:0.4.2_iss58' }" | ||
| 'https://depot.galaxyproject.org/singularity/wakhan:0.4.3--pyhdfd78af_0': | ||
| 'biocontainers/wakhan:0.4.3--pyhdfd78af_0' }" |
| @@ -4,8 +4,8 @@ process WAKHAN { | |||
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|
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| conda "${moduleDir}/environment.yml" | |||
| container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? | |||
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| conda "${moduleDir}/environment.yml" | ||
| container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? | ||
| 'robertaforsyth/wakhan:0.4.2_iss58': | ||
| 'docker://robertaforsyth/wakhan:0.4.2_iss58' }" | ||
| 'https://depot.galaxyproject.org/singularity/wakhan:0.4.3--pyhdfd78af_0': | ||
| 'biocontainers/wakhan:0.4.3--pyhdfd78af_0' }" |
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| withName : '.*:WGET' { | ||
| ext.args = { | ||
| [ | ||
| "--no-check-certificate" | ||
| ].join(' ').trim() } |
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| ext.args = { | ||
| [ | ||
| "--no-check-certificate" | ||
| ].join(' ').trim() } |
robert-a-forsyth
approved these changes
Jun 1, 2026
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PR checklist
nf-core pipelines lint).nextflow run . -profile test,docker --outdir <OUTDIR>).nextflow run . -profile debug,test,docker --outdir <OUTDIR>).docs/usage.mdis updated.docs/output.mdis updated.CHANGELOG.mdis updated.README.mdis updated (including new tool citations and authors/contributors).