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Commented unnecesary import of pyham#72

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sinamajidian merged 3 commits intoDessimozLab:minimap2from
chalco777:minimap2
Sep 2, 2025
Merged

Commented unnecesary import of pyham#72
sinamajidian merged 3 commits intoDessimozLab:minimap2from
chalco777:minimap2

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@chalco777
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@sinamajidian
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I'm wondering whether there is other occurrences that pyham is being used in read2tree - minimap2 branch? it seems to be only for reading orthoxml, which is already commented out.

@chalco777
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chalco777 commented Sep 2, 2025

I've checked the code and didn't find any other occurrences. Maybe, just taking into account that when trying to access the instance attribute self._ham_analysis it will always be None (because of the _load_orthoxml method is commented out), but in any case that functionality is not used in this version. Just updated the python and conda library requirements

@sinamajidian sinamajidian merged commit 0bcc6fc into DessimozLab:minimap2 Sep 2, 2025
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