Website: https://biodatasci.colorado.edu/shortread/

GitHub repository: Dowell-Lab/srworkshop

Instructor: Matthew Galbraith
An overview of the Human Trisome Project and the journey from data to discovery.

Instructor: Matthew Galbraith
An introduction to important concepts in omics and best practices in data science.

Getting started with R and RStudio
GitHub repository: installing_updating_R-RStudio

Alternatives to running locally:
Posit Cloud
Cavatica

Instructor: Matthew Galbraith
A guide to conducting reproducible data analysis in R using RStudio and tidy principles.

GitHub repository: tidy_data_exercise

GitHub repository: Rproject_template

Instructor: Matthew Galbraith
An introduction to hypothesis testing and analysis of data using linear regression.

GitHub repository: linear_regression_exercise

GitHub repository: HTP_linear_regression_example

Instructor: Matthew Galbraith
An overview of the high-throughput sequencing analysis workflow, quality control, and bulk RNA-sequencing analysis in R.

GitHub repository: HTP_DESeq2_analysis

Instructor: Jim Costello
An overview of data visualization, dimension reduction, and clustering methods leveraging HTP datasets.

GitHub repository: Visualize_Cluster_HTP

Instructor: Jim Costello
Applications of simple machine learning methods to predict outcomes leveraging HTP datasets.

GitHub repository: PredictiveModels

Instructor: Matthew Galbraith
Introduction to high-dimensional single cell analysis using HTP mass cytometry data.

GitHub repository: HTP_beta_regression_example

GitHub repository: mass_cytometry_dataviz

Instructor: Matthew Galbraith
A guide to the INCLUDE Data Hub and how to transfer data to the Cavatica platform for analysis.

GitHub repository: R_analysis_CAVATICA

Instructor: Matthew Galbraith