Summer 2022 Patch Release v1.0.1 #581
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* updating job script and tutorial * tutorial; fix config file * tutorial finished * no change * psfex update (minor bug) * psfex running * updated MCCD config files * comment in config file * config file fix for MCCD * config file fix for MCCD * removed unused option in usage str * Update docs/source/pipeline_tutorial.md Co-authored-by: Samuel Farrens <[email protected]> * improved tutorial according to PR review * Update docs/source/pipeline_tutorial.md Co-authored-by: Samuel Farrens <[email protected]> * tutorial clean-up * post_proc cleaned up; tutorial added output dir names * changes to tutorial, post-proc and mccd plot doc * get_images error msg testing * Update docs/source/pipeline_tutorial.md Co-authored-by: Samuel Farrens <[email protected]> * Update docs/source/pipeline_tutorial.md Co-authored-by: Samuel Farrens <[email protected]> * Update docs/source/pipeline_tutorial.md Co-authored-by: Samuel Farrens <[email protected]> * Update docs/source/pipeline_tutorial.md Co-authored-by: Samuel Farrens <[email protected]> * removed prompt from bash example * Update docs/source/post_processing.md Co-authored-by: Samuel Farrens <[email protected]> * PR review changes to doc * PR review changes to doc * Update docs/source/post_processing.md Co-authored-by: Samuel Farrens <[email protected]> Co-authored-by: Samuel Farrens <[email protected]>
* added contribution guidelines * Update CODE_OF_CONDUCT.md
Co-authored-by: Lucie Baumont <[email protected]>
* added md for understanding the api docs * updates following reviwer comments
* updated doc-tests * updated package versions * pin documentation packages * updated ShapePipe version and cleaned up
* Removed unused config files in example/cfis * Removed obsolete config dirs tutorial and ps3pi_cfis * removed old unions config files
Co-authored-by: Martin Kilbinger <[email protected]>
* merge_final script: added option for additional tile ID path to select tiles; clean-up * typo in doc string
removed errornous mccd_interp_runner call
* updated docs and references * Update docs/source/module_develop.md Co-authored-by: Martin Kilbinger <[email protected]> Co-authored-by: Martin Kilbinger <[email protected]>
* merge_final script: added option for additional tile ID path to select tiles; clean-up * typo in doc string * started to implement healpix mask output * healpix options for random/mask * Update shapepipe/modules/random_cat_package/random_cat.py Co-authored-by: Samuel Farrens <[email protected]> * Update shapepipe/modules/random_cat_package/random_cat.py Co-authored-by: Samuel Farrens <[email protected]> * Update shapepipe/modules/random_cat_package/random_cat.py Co-authored-by: Samuel Farrens <[email protected]> * Update shapepipe/modules/random_cat_package/random_cat.py Co-authored-by: Samuel Farrens <[email protected]> * Modifications for PR review * comments from PR review Co-authored-by: Samuel Farrens <[email protected]>
* added masking for NGC objects * debugging ngc np binary file * Fixed bugs in new mask handling (input FITS files) * debug info to log file for checking existing images * mask: combined dso masks into dictionary * PR edits * Update shapepipe/modules/mask_package/mask.py Co-authored-by: Samuel Farrens <[email protected]> * Update shapepipe/modules/mask_package/mask.py Co-authored-by: Samuel Farrens <[email protected]> * Update shapepipe/modules/mask_package/mask.py Co-authored-by: Samuel Farrens <[email protected]> * Update shapepipe/modules/mask_package/mask.py Co-authored-by: Samuel Farrens <[email protected]> * added symlink * Update shapepipe/pipeline/file_io.py Co-authored-by: Samuel Farrens <[email protected]> * Update shapepipe/modules/mask_package/mask.py Co-authored-by: Samuel Farrens <[email protected]> * Update shapepipe/pipeline/file_io.py Co-authored-by: Samuel Farrens <[email protected]> * Update shapepipe/pipeline/file_io.py Co-authored-by: Samuel Farrens <[email protected]> * Update shapepipe/pipeline/file_io.py Co-authored-by: Samuel Farrens <[email protected]> * Update shapepipe/pipeline/file_io.py Co-authored-by: Samuel Farrens <[email protected]> * Update shapepipe/modules/mask_package/mask.py Co-authored-by: Samuel Farrens <[email protected]> * Update shapepipe/modules/mask_package/mask.py Co-authored-by: Samuel Farrens <[email protected]> * Update shapepipe/modules/mask_package/mask.py Co-authored-by: Samuel Farrens <[email protected]> * Update shapepipe/pipeline/file_io.py Co-authored-by: Samuel Farrens <[email protected]> * PR suggestions Co-authored-by: Samuel Farrens <[email protected]>
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Hi @martinkilbinger you don't need to check every change in every file as this should have been done in the PRs listed above. Please just check that there is nothing surprising to you in the list of files modified. If everything looks good to you please approve this PR and I will merge. |
Contributor
OK, will try do to it after the telecon. |
sfarrens
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Oct 12, 2022
* Summer 2022 Patch Release v1.0.1 (#581) * added CD GitHub action * fixed bug in RunLog class (#548) * 800deg2 (#544) * added config files for matching 800deg2 survey * Added Xavier as contributor; match external catalogue fix * match 800 * match_ext: output distance * match_ext output_dist def value * Tutorial documentation (#543) * updating job script and tutorial * tutorial; fix config file * tutorial finished * no change * psfex update (minor bug) * psfex running * updated MCCD config files * comment in config file * config file fix for MCCD * config file fix for MCCD * removed unused option in usage str * Update docs/source/pipeline_tutorial.md Co-authored-by: Samuel Farrens <[email protected]> * improved tutorial according to PR review * Update docs/source/pipeline_tutorial.md Co-authored-by: Samuel Farrens <[email protected]> * tutorial clean-up * post_proc cleaned up; tutorial added output dir names * changes to tutorial, post-proc and mccd plot doc * get_images error msg testing * Update docs/source/pipeline_tutorial.md Co-authored-by: Samuel Farrens <[email protected]> * Update docs/source/pipeline_tutorial.md Co-authored-by: Samuel Farrens <[email protected]> * Update docs/source/pipeline_tutorial.md Co-authored-by: Samuel Farrens <[email protected]> * Update docs/source/pipeline_tutorial.md Co-authored-by: Samuel Farrens <[email protected]> * removed prompt from bash example * Update docs/source/post_processing.md Co-authored-by: Samuel Farrens <[email protected]> * PR review changes to doc * PR review changes to doc * Update docs/source/post_processing.md Co-authored-by: Samuel Farrens <[email protected]> Co-authored-by: Samuel Farrens <[email protected]> * added contribution guidelines (#550) * added contribution guidelines * Update CODE_OF_CONDUCT.md * tutorial bugfixes (#552) Co-authored-by: Lucie Baumont <[email protected]> * removed pep8 error exceptions (#554) * Understanding the API docs (#553) * added md for understanding the api docs * updates following reviwer comments * Update package versions (#539) * updated doc-tests * updated package versions * pin documentation packages * updated ShapePipe version and cleaned up * Config file clean up (#556) * Removed unused config files in example/cfis * Removed obsolete config dirs tutorial and ps3pi_cfis * removed old unions config files * Update docs/source/configuration.md Co-authored-by: Martin Kilbinger <[email protected]> * final clean up * removed obsolete distance-based overlap region flagging * removed errornous mccd_interp_runner call * Added Tobias' MCCD plot config file to validate joint cat * Added Tobias' MCCD plot config file to validate joint cat * removed duplicate config file * Random catalogue improvements (#570) * merge_final script: added option for additional tile ID path to select tiles; clean-up * typo in doc string * Updated docs and references (#579) * updated docs and references * Update docs/source/module_develop.md Co-authored-by: Martin Kilbinger <[email protected]> Co-authored-by: Martin Kilbinger <[email protected]> * Random runner updates (#573) * merge_final script: added option for additional tile ID path to select tiles; clean-up * typo in doc string * started to implement healpix mask output * healpix options for random/mask * Update shapepipe/modules/random_cat_package/random_cat.py Co-authored-by: Samuel Farrens <[email protected]> * Update shapepipe/modules/random_cat_package/random_cat.py Co-authored-by: Samuel Farrens <[email protected]> * Update shapepipe/modules/random_cat_package/random_cat.py Co-authored-by: Samuel Farrens <[email protected]> * Update shapepipe/modules/random_cat_package/random_cat.py Co-authored-by: Samuel Farrens <[email protected]> * Modifications for PR review * comments from PR review Co-authored-by: Samuel Farrens <[email protected]> * added masking for NGC objects (#575) * added masking for NGC objects * debugging ngc np binary file * Fixed bugs in new mask handling (input FITS files) * debug info to log file for checking existing images * mask: combined dso masks into dictionary * PR edits * Update shapepipe/modules/mask_package/mask.py Co-authored-by: Samuel Farrens <[email protected]> * Update shapepipe/modules/mask_package/mask.py Co-authored-by: Samuel Farrens <[email protected]> * Update shapepipe/modules/mask_package/mask.py Co-authored-by: Samuel Farrens <[email protected]> * Update shapepipe/modules/mask_package/mask.py Co-authored-by: Samuel Farrens <[email protected]> * added symlink * Update shapepipe/pipeline/file_io.py Co-authored-by: Samuel Farrens <[email protected]> * Update shapepipe/modules/mask_package/mask.py Co-authored-by: Samuel Farrens <[email protected]> * Update shapepipe/pipeline/file_io.py Co-authored-by: Samuel Farrens <[email protected]> * Update shapepipe/pipeline/file_io.py Co-authored-by: Samuel Farrens <[email protected]> * Update shapepipe/pipeline/file_io.py Co-authored-by: Samuel Farrens <[email protected]> * Update shapepipe/pipeline/file_io.py Co-authored-by: Samuel Farrens <[email protected]> * Update shapepipe/modules/mask_package/mask.py Co-authored-by: Samuel Farrens <[email protected]> * Update shapepipe/modules/mask_package/mask.py Co-authored-by: Samuel Farrens <[email protected]> * Update shapepipe/modules/mask_package/mask.py Co-authored-by: Samuel Farrens <[email protected]> * Update shapepipe/pipeline/file_io.py Co-authored-by: Samuel Farrens <[email protected]> * PR suggestions Co-authored-by: Samuel Farrens <[email protected]> * update patch version Co-authored-by: Martin Kilbinger <[email protected]> Co-authored-by: Lucie Baumont <[email protected]> Co-authored-by: Lucie Baumont <[email protected]> Co-authored-by: Tobias Liaudat <[email protected]> * fixed typo in variable name * config file vignet runner output fixed * typo in make_cat config ini file fixed Co-authored-by: Samuel Farrens <[email protected]> Co-authored-by: Lucie Baumont <[email protected]> Co-authored-by: Lucie Baumont <[email protected]> Co-authored-by: Tobias Liaudat <[email protected]>
sfarrens
added a commit
that referenced
this pull request
Oct 12, 2022
* added CD GitHub action * fixed bug in RunLog class (#548) * 800deg2 (#544) * added config files for matching 800deg2 survey * Added Xavier as contributor; match external catalogue fix * match 800 * match_ext: output distance * match_ext output_dist def value * Tutorial documentation (#543) * updating job script and tutorial * tutorial; fix config file * tutorial finished * no change * psfex update (minor bug) * psfex running * updated MCCD config files * comment in config file * config file fix for MCCD * config file fix for MCCD * removed unused option in usage str * Update docs/source/pipeline_tutorial.md Co-authored-by: Samuel Farrens <[email protected]> * improved tutorial according to PR review * Update docs/source/pipeline_tutorial.md Co-authored-by: Samuel Farrens <[email protected]> * tutorial clean-up * post_proc cleaned up; tutorial added output dir names * changes to tutorial, post-proc and mccd plot doc * get_images error msg testing * Update docs/source/pipeline_tutorial.md Co-authored-by: Samuel Farrens <[email protected]> * Update docs/source/pipeline_tutorial.md Co-authored-by: Samuel Farrens <[email protected]> * Update docs/source/pipeline_tutorial.md Co-authored-by: Samuel Farrens <[email protected]> * Update docs/source/pipeline_tutorial.md Co-authored-by: Samuel Farrens <[email protected]> * removed prompt from bash example * Update docs/source/post_processing.md Co-authored-by: Samuel Farrens <[email protected]> * PR review changes to doc * PR review changes to doc * Update docs/source/post_processing.md Co-authored-by: Samuel Farrens <[email protected]> Co-authored-by: Samuel Farrens <[email protected]> * added contribution guidelines (#550) * added contribution guidelines * Update CODE_OF_CONDUCT.md * tutorial bugfixes (#552) Co-authored-by: Lucie Baumont <[email protected]> * removed pep8 error exceptions (#554) * Understanding the API docs (#553) * added md for understanding the api docs * updates following reviwer comments * Update package versions (#539) * updated doc-tests * updated package versions * pin documentation packages * updated ShapePipe version and cleaned up * Config file clean up (#556) * Removed unused config files in example/cfis * Removed obsolete config dirs tutorial and ps3pi_cfis * removed old unions config files * Update docs/source/configuration.md Co-authored-by: Martin Kilbinger <[email protected]> * final clean up * removed obsolete distance-based overlap region flagging * removed errornous mccd_interp_runner call * Added Tobias' MCCD plot config file to validate joint cat * Added Tobias' MCCD plot config file to validate joint cat * removed duplicate config file * Random catalogue improvements (#570) * merge_final script: added option for additional tile ID path to select tiles; clean-up * typo in doc string * Updated docs and references (#579) * updated docs and references * Update docs/source/module_develop.md Co-authored-by: Martin Kilbinger <[email protected]> Co-authored-by: Martin Kilbinger <[email protected]> * Random runner updates (#573) * merge_final script: added option for additional tile ID path to select tiles; clean-up * typo in doc string * started to implement healpix mask output * healpix options for random/mask * Update shapepipe/modules/random_cat_package/random_cat.py Co-authored-by: Samuel Farrens <[email protected]> * Update shapepipe/modules/random_cat_package/random_cat.py Co-authored-by: Samuel Farrens <[email protected]> * Update shapepipe/modules/random_cat_package/random_cat.py Co-authored-by: Samuel Farrens <[email protected]> * Update shapepipe/modules/random_cat_package/random_cat.py Co-authored-by: Samuel Farrens <[email protected]> * Modifications for PR review * comments from PR review Co-authored-by: Samuel Farrens <[email protected]> * added masking for NGC objects (#575) * added masking for NGC objects * debugging ngc np binary file * Fixed bugs in new mask handling (input FITS files) * debug info to log file for checking existing images * mask: combined dso masks into dictionary * PR edits * Update shapepipe/modules/mask_package/mask.py Co-authored-by: Samuel Farrens <[email protected]> * Update shapepipe/modules/mask_package/mask.py Co-authored-by: Samuel Farrens <[email protected]> * Update shapepipe/modules/mask_package/mask.py Co-authored-by: Samuel Farrens <[email protected]> * Update shapepipe/modules/mask_package/mask.py Co-authored-by: Samuel Farrens <[email protected]> * added symlink * Update shapepipe/pipeline/file_io.py Co-authored-by: Samuel Farrens <[email protected]> * Update shapepipe/modules/mask_package/mask.py Co-authored-by: Samuel Farrens <[email protected]> * Update shapepipe/pipeline/file_io.py Co-authored-by: Samuel Farrens <[email protected]> * Update shapepipe/pipeline/file_io.py Co-authored-by: Samuel Farrens <[email protected]> * Update shapepipe/pipeline/file_io.py Co-authored-by: Samuel Farrens <[email protected]> * Update shapepipe/pipeline/file_io.py Co-authored-by: Samuel Farrens <[email protected]> * Update shapepipe/modules/mask_package/mask.py Co-authored-by: Samuel Farrens <[email protected]> * Update shapepipe/modules/mask_package/mask.py Co-authored-by: Samuel Farrens <[email protected]> * Update shapepipe/modules/mask_package/mask.py Co-authored-by: Samuel Farrens <[email protected]> * Update shapepipe/pipeline/file_io.py Co-authored-by: Samuel Farrens <[email protected]> * PR suggestions Co-authored-by: Samuel Farrens <[email protected]> * update patch version * random runner: hp masks working; doc updated (#580) * random runner: hp masks working; doc updated * random runner config file updated * Update shapepipe/modules/random_cat_package/random_cat.py Co-authored-by: Samuel Farrens <[email protected]> * passing tests * Update shapepipe/modules/random_cat_package/__init__.py Co-authored-by: Samuel Farrens <[email protected]> * Update shapepipe/modules/random_cat_package/__init__.py Co-authored-by: Samuel Farrens <[email protected]> Co-authored-by: Samuel Farrens <[email protected]> * Bug fix(es) for v1.0.1 (#586) * Summer 2022 Patch Release v1.0.1 (#581) * added CD GitHub action * fixed bug in RunLog class (#548) * 800deg2 (#544) * added config files for matching 800deg2 survey * Added Xavier as contributor; match external catalogue fix * match 800 * match_ext: output distance * match_ext output_dist def value * Tutorial documentation (#543) * updating job script and tutorial * tutorial; fix config file * tutorial finished * no change * psfex update (minor bug) * psfex running * updated MCCD config files * comment in config file * config file fix for MCCD * config file fix for MCCD * removed unused option in usage str * Update docs/source/pipeline_tutorial.md Co-authored-by: Samuel Farrens <[email protected]> * improved tutorial according to PR review * Update docs/source/pipeline_tutorial.md Co-authored-by: Samuel Farrens <[email protected]> * tutorial clean-up * post_proc cleaned up; tutorial added output dir names * changes to tutorial, post-proc and mccd plot doc * get_images error msg testing * Update docs/source/pipeline_tutorial.md Co-authored-by: Samuel Farrens <[email protected]> * Update docs/source/pipeline_tutorial.md Co-authored-by: Samuel Farrens <[email protected]> * Update docs/source/pipeline_tutorial.md Co-authored-by: Samuel Farrens <[email protected]> * Update docs/source/pipeline_tutorial.md Co-authored-by: Samuel Farrens <[email protected]> * removed prompt from bash example * Update docs/source/post_processing.md Co-authored-by: Samuel Farrens <[email protected]> * PR review changes to doc * PR review changes to doc * Update docs/source/post_processing.md Co-authored-by: Samuel Farrens <[email protected]> Co-authored-by: Samuel Farrens <[email protected]> * added contribution guidelines (#550) * added contribution guidelines * Update CODE_OF_CONDUCT.md * tutorial bugfixes (#552) Co-authored-by: Lucie Baumont <[email protected]> * removed pep8 error exceptions (#554) * Understanding the API docs (#553) * added md for understanding the api docs * updates following reviwer comments * Update package versions (#539) * updated doc-tests * updated package versions * pin documentation packages * updated ShapePipe version and cleaned up * Config file clean up (#556) * Removed unused config files in example/cfis * Removed obsolete config dirs tutorial and ps3pi_cfis * removed old unions config files * Update docs/source/configuration.md Co-authored-by: Martin Kilbinger <[email protected]> * final clean up * removed obsolete distance-based overlap region flagging * removed errornous mccd_interp_runner call * Added Tobias' MCCD plot config file to validate joint cat * Added Tobias' MCCD plot config file to validate joint cat * removed duplicate config file * Random catalogue improvements (#570) * merge_final script: added option for additional tile ID path to select tiles; clean-up * typo in doc string * Updated docs and references (#579) * updated docs and references * Update docs/source/module_develop.md Co-authored-by: Martin Kilbinger <[email protected]> Co-authored-by: Martin Kilbinger <[email protected]> * Random runner updates (#573) * merge_final script: added option for additional tile ID path to select tiles; clean-up * typo in doc string * started to implement healpix mask output * healpix options for random/mask * Update shapepipe/modules/random_cat_package/random_cat.py Co-authored-by: Samuel Farrens <[email protected]> * Update shapepipe/modules/random_cat_package/random_cat.py Co-authored-by: Samuel Farrens <[email protected]> * Update shapepipe/modules/random_cat_package/random_cat.py Co-authored-by: Samuel Farrens <[email protected]> * Update shapepipe/modules/random_cat_package/random_cat.py Co-authored-by: Samuel Farrens <[email protected]> * Modifications for PR review * comments from PR review Co-authored-by: Samuel Farrens <[email protected]> * added masking for NGC objects (#575) * added masking for NGC objects * debugging ngc np binary file * Fixed bugs in new mask handling (input FITS files) * debug info to log file for checking existing images * mask: combined dso masks into dictionary * PR edits * Update shapepipe/modules/mask_package/mask.py Co-authored-by: Samuel Farrens <[email protected]> * Update shapepipe/modules/mask_package/mask.py Co-authored-by: Samuel Farrens <[email protected]> * Update shapepipe/modules/mask_package/mask.py Co-authored-by: Samuel Farrens <[email protected]> * Update shapepipe/modules/mask_package/mask.py Co-authored-by: Samuel Farrens <[email protected]> * added symlink * Update shapepipe/pipeline/file_io.py Co-authored-by: Samuel Farrens <[email protected]> * Update shapepipe/modules/mask_package/mask.py Co-authored-by: Samuel Farrens <[email protected]> * Update shapepipe/pipeline/file_io.py Co-authored-by: Samuel Farrens <[email protected]> * Update shapepipe/pipeline/file_io.py Co-authored-by: Samuel Farrens <[email protected]> * Update shapepipe/pipeline/file_io.py Co-authored-by: Samuel Farrens <[email protected]> * Update shapepipe/pipeline/file_io.py Co-authored-by: Samuel Farrens <[email protected]> * Update shapepipe/modules/mask_package/mask.py Co-authored-by: Samuel Farrens <[email protected]> * Update shapepipe/modules/mask_package/mask.py Co-authored-by: Samuel Farrens <[email protected]> * Update shapepipe/modules/mask_package/mask.py Co-authored-by: Samuel Farrens <[email protected]> * Update shapepipe/pipeline/file_io.py Co-authored-by: Samuel Farrens <[email protected]> * PR suggestions Co-authored-by: Samuel Farrens <[email protected]> * update patch version Co-authored-by: Martin Kilbinger <[email protected]> Co-authored-by: Lucie Baumont <[email protected]> Co-authored-by: Lucie Baumont <[email protected]> Co-authored-by: Tobias Liaudat <[email protected]> * fixed typo in variable name * config file vignet runner output fixed * typo in make_cat config ini file fixed Co-authored-by: Samuel Farrens <[email protected]> Co-authored-by: Lucie Baumont <[email protected]> Co-authored-by: Lucie Baumont <[email protected]> Co-authored-by: Tobias Liaudat <[email protected]> * fixed blank lines Co-authored-by: Martin Kilbinger <[email protected]> Co-authored-by: Lucie Baumont <[email protected]> Co-authored-by: Lucie Baumont <[email protected]> Co-authored-by: Tobias Liaudat <[email protected]>
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This patch includes the following PRs: