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geofetch/cli.py

Lines changed: 2 additions & 6 deletions
Original file line numberDiff line numberDiff line change
@@ -238,9 +238,7 @@ def _parse_cmdl(cmdl):
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default=_safe_echo("SRABAM"),
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help="""Optional: Specify folder of bam files. Geofetch will not
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download sra files when corresponding bam files already exist.
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[Default: $SRABAM:"""
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+ _safe_echo("SRABAM")
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+ "]",
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[Default: $SRABAM:""" + _safe_echo("SRABAM") + "]",
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)
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raw_group.add_argument(
@@ -250,9 +248,7 @@ def _parse_cmdl(cmdl):
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default=_safe_echo("SRAFQ"),
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help="""Optional: Specify folder of fastq files. Geofetch will not
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download sra files when corresponding fastq files already exist.
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[Default: $SRAFQ:"""
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+ _safe_echo("SRAFQ")
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+ "]",
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[Default: $SRAFQ:""" + _safe_echo("SRAFQ") + "]",
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)
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# Deprecated; these are for bam conversion which now happens in sra_convert

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