Skip to content

INSTALLATION.md

Latest commit

 

History

History
45 lines (34 loc) · 899 Bytes

INSTALLATION.md

File metadata and controls

45 lines (34 loc) · 899 Bytes
title Installation
date 2025-08-22
authors
name
A. Sina Booeshaghi

Installation

The development version can be installed with

# using pip
pip install git+https://github.com/pachterlab/seqspec@devel
# using uv
uv pip install git+https://github.com/pachterlab/seqspec@devel

The official release can be installed directly from pypi

# using pip
pip install seqspec
# using uv
uv pip install seqspec

Install from source if you want the current working tree.

# Python package with the Rust core
uv run maturin develop

# standalone Rust CLI
cargo install --path .

Verify the installation.

seqspec --version
seqspec auth path

seqspec accepts plain YAML and gzipped YAML (.yaml.gz). Remote resources can be configured with seqspec auth and used with --auth-profile in commands such as seqspec check and seqspec onlist.