diff --git a/js/web/test/suite-test-list.jsonc b/js/web/test/suite-test-list.jsonc
index 4905352eb111b..d08a72b922142 100644
--- a/js/web/test/suite-test-list.jsonc
+++ b/js/web/test/suite-test-list.jsonc
@@ -453,7 +453,7 @@
       // // "test_convinteger_without_padding",
       "test_convtranspose_1d",
       // // "test_convtranspose_3d",
-      "test_convtranspose_autopad_same",
+      "!(opset14)/test_convtranspose_autopad_same",
       "test_convtranspose_dilations",
       "test_convtranspose_kernel_shape",
       "opset{9,17}/test_convtranspose_output_shape",
diff --git a/onnxruntime/test/testdata/onnx_backend_test_series_filters.jsonc b/onnxruntime/test/testdata/onnx_backend_test_series_filters.jsonc
index d62ffe644e4cc..127f4fd445f4e 100644
--- a/onnxruntime/test/testdata/onnx_backend_test_series_filters.jsonc
+++ b/onnxruntime/test/testdata/onnx_backend_test_series_filters.jsonc
@@ -109,7 +109,6 @@
         //GPU failures
         "^test_batchnorm_epsilon_training_mode_cuda",
         "^test_batchnorm_example_training_mode_cuda",
-        "^test_convtranspose_autopad_same_cpu",
         "^test_sub_uint8_cuda",
         "^test_simple_rnn_batchwise_cuda",
         "^test_mul_uint8_cuda",
@@ -873,7 +872,9 @@
     "failing_permanently_nodejs_binding": [
         // those test cases are no longer available in later opset version
         ["opset10", "^test_mod_float_mixed_sign_example"],
-        ["opset11", "^test_unique_not_sorted_without_axis"]
+        ["opset11", "^test_unique_not_sorted_without_axis"],
+        // those test cases are generated incorrectly
+        ["opset14", "^test_convtranspose_autopad_same"]
     ],
     "test_with_types_disabled_due_to_binary_size_concerns": [
         "^test_bitshift_right_uint16",