From 492a8eff3048821ecd84230cff16776eab470277 Mon Sep 17 00:00:00 2001 From: Peter Hessey Date: Wed, 12 Oct 2022 16:40:45 +0100 Subject: [PATCH] =?UTF-8?q?=E2=AC=86=EF=B8=8F=20=F0=9F=93=8C=20Upgrade=20D?= =?UTF-8?q?ICOM-RT=20+=20lock?= MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit --- TestSubmodule/environment.yml | 51 +++++++++++++++++------------------ environment.yml | 51 +++++++++++++++++------------------ primary_deps.yml | 2 +- 3 files changed, 51 insertions(+), 53 deletions(-) diff --git a/TestSubmodule/environment.yml b/TestSubmodule/environment.yml index 777d522a7..df3aca367 100644 --- a/TestSubmodule/environment.yml +++ b/TestSubmodule/environment.yml @@ -11,7 +11,7 @@ dependencies: - blosc=1.21.0=h4ff587b_1 - bzip2=1.0.8=h7b6447c_0 - ca-certificates=2022.07.19=h06a4308_0 - - certifi=2022.9.14=py38h06a4308_0 + - certifi=2022.9.24=py38h06a4308_0 - cudatoolkit=11.3.1=h2bc3f7f_2 - ffmpeg=4.2.2=h20bf706_0 - freetype=2.11.0=h70c0345_0 @@ -37,8 +37,8 @@ dependencies: - libunistring=0.9.10=h27cfd23_0 - libuv=1.40.0=h7b6447c_0 - libvpx=1.7.0=h439df22_0 - - libwebp=1.2.2=h55f646e_0 - - libwebp-base=1.2.2=h7f8727e_0 + - libwebp=1.2.4=h11a3e52_0 + - libwebp-base=1.2.4=h5eee18b_0 - lz4-c=1.9.3=h295c915_1 - mkl=2021.4.0=h06a4308_640 - mkl-service=2.4.0=py38h7f8727e_0 @@ -55,13 +55,13 @@ dependencies: - pytorch-mutex=1.0=cuda - readline=8.1.2=h7f8727e_1 - setuptools=63.4.1=py38h06a4308_0 - - sqlite=3.39.2=h5082296_0 + - sqlite=3.39.3=h5082296_0 - tk=8.6.12=h1ccaba5_0 - torchvision=0.11.1=py38_cu113 - typing_extensions=4.3.0=py38h06a4308_0 - wheel=0.37.1=pyhd3eb1b0_0 - x264=1!157.20191217=h7b6447c_0 - - xz=5.2.5=h7f8727e_1 + - xz=5.2.6=h5eee18b_0 - zlib=1.2.12=h5eee18b_3 - zstd=1.5.2=ha4553b6_0 - pip: @@ -78,7 +78,7 @@ dependencies: - async-timeout==4.0.2 - attrs==22.1.0 - azure-common==1.1.28 - - azure-core==1.25.1 + - azure-core==1.26.0 - azure-graphrbac==0.61.1 - azure-identity==1.7.0 - azure-mgmt-authorization==0.61.0 @@ -109,7 +109,7 @@ dependencies: - backports-tempfile==1.0 - backports-weakref==1.0.post1 - beautifulsoup4==4.11.1 - - black==22.8.0 + - black==22.10.0 - bleach==5.0.1 - cachetools==4.2.4 - cffi==1.15.1 @@ -120,7 +120,7 @@ dependencies: - commonmark==0.9.1 - conda-merge==0.1.5 - contextlib2==21.6.0 - - coverage==6.4.4 + - coverage==6.5.0 - cryptography==3.3.2 - cycler==0.11.0 - databricks-cli==0.17.3 @@ -128,7 +128,7 @@ dependencies: - debugpy==1.6.3 - defusedxml==0.7.1 - deprecated==1.2.13 - - distro==1.7.0 + - distro==1.8.0 - docker==4.3.1 - docutils==0.18.1 - dotnetcore2==2.1.23 @@ -147,7 +147,7 @@ dependencies: - google-auth==1.35.0 - google-auth-oauthlib==0.4.6 - gputil==1.4.0 - - greenlet==1.1.3 + - greenlet==1.1.3.post0 - grpcio==1.49.1 - gunicorn==20.1.0 - h5py==2.10.0 @@ -157,10 +157,10 @@ dependencies: - idna==3.4 - imageio==2.15.0 - imagesize==1.4.1 - - importlib-metadata==4.12.0 - - importlib-resources==5.9.0 + - importlib-metadata==5.0.0 + - importlib-resources==5.10.0 - iniconfig==1.1.1 - - innereye-dicom-rt==1.0.3 + - innereye-dicom-rt==1.1.0 - ipykernel==6.16.0 - ipython==7.31.1 - ipython-genutils==0.2.0 @@ -182,7 +182,6 @@ dependencies: - kiwisolver==1.4.4 - lightning-bolts==0.4.0 - llvmlite==0.34.0 - - lxml==4.9.1 - mako==1.2.3 - markdown==3.4.1 - markdown-it-py==2.1.0 @@ -198,7 +197,7 @@ dependencies: - mlflow-skinny==1.29.0 - monai==0.6.0 - more-itertools==8.14.0 - - msal==1.19.0 + - msal==1.20.0 - msal-extensions==0.3.1 - msrest==0.7.1 - msrestazure==0.6.4 @@ -206,12 +205,12 @@ dependencies: - mypy==0.910 - mypy-extensions==0.4.3 - myst-parser==0.18.0 - - nbclient==0.6.8 - - nbconvert==7.0.0 - - nbformat==5.6.1 + - nbclient==0.7.0 + - nbconvert==7.2.1 + - nbformat==5.7.0 - ndg-httpsclient==0.5.1 - - nest-asyncio==1.5.5 - - networkx==2.8.6 + - nest-asyncio==1.5.6 + - networkx==2.8.7 - nibabel==4.0.2 - notebook==6.4.12 - numba==0.51.2 @@ -256,12 +255,12 @@ dependencies: - pytest-xdist==1.34.0 - python-dateutil==2.8.2 - pytorch-lightning==1.6.5 - - pytz==2022.2.1 + - pytz==2022.4 - pywavelets==1.4.1 - pyyaml==6.0 - pyzmq==24.0.1 - qtconsole==5.3.2 - - qtpy==2.2.0 + - qtpy==2.2.1 - querystring-parser==1.2.4 - requests==2.28.1 - requests-oauthlib==1.3.1 @@ -284,7 +283,7 @@ dependencies: - soupsieve==2.3.2.post1 - sphinx==5.0.2 - sphinx-argparse==0.3.1 - - sphinx-basic-ng==0.0.1a12 + - sphinx-basic-ng==1.0.0b1 - sphinx-rtd-theme==1.0.0 - sphinxcontrib-applehelp==1.0.2 - sphinxcontrib-devhelp==1.0.2 @@ -301,10 +300,10 @@ dependencies: - tensorboard==2.3.0 - tensorboard-plugin-wit==1.8.1 - tensorboardx==2.1 - - terminado==0.15.0 + - terminado==0.16.0 - textwrap3==0.9.2 - threadpoolctl==3.1.0 - - tifffile==2022.8.12 + - tifffile==2022.10.10 - tinycss2==1.1.1 - toml==0.10.2 - tomli==2.0.1 @@ -322,4 +321,4 @@ dependencies: - wrapt==1.14.1 - yacs==0.1.8 - yarl==1.8.1 - - zipp==3.8.1 + - zipp==3.9.0 diff --git a/environment.yml b/environment.yml index 777d522a7..df3aca367 100644 --- a/environment.yml +++ b/environment.yml @@ -11,7 +11,7 @@ dependencies: - blosc=1.21.0=h4ff587b_1 - bzip2=1.0.8=h7b6447c_0 - ca-certificates=2022.07.19=h06a4308_0 - - certifi=2022.9.14=py38h06a4308_0 + - certifi=2022.9.24=py38h06a4308_0 - cudatoolkit=11.3.1=h2bc3f7f_2 - ffmpeg=4.2.2=h20bf706_0 - freetype=2.11.0=h70c0345_0 @@ -37,8 +37,8 @@ dependencies: - libunistring=0.9.10=h27cfd23_0 - libuv=1.40.0=h7b6447c_0 - libvpx=1.7.0=h439df22_0 - - libwebp=1.2.2=h55f646e_0 - - libwebp-base=1.2.2=h7f8727e_0 + - libwebp=1.2.4=h11a3e52_0 + - libwebp-base=1.2.4=h5eee18b_0 - lz4-c=1.9.3=h295c915_1 - mkl=2021.4.0=h06a4308_640 - mkl-service=2.4.0=py38h7f8727e_0 @@ -55,13 +55,13 @@ dependencies: - pytorch-mutex=1.0=cuda - readline=8.1.2=h7f8727e_1 - setuptools=63.4.1=py38h06a4308_0 - - sqlite=3.39.2=h5082296_0 + - sqlite=3.39.3=h5082296_0 - tk=8.6.12=h1ccaba5_0 - torchvision=0.11.1=py38_cu113 - typing_extensions=4.3.0=py38h06a4308_0 - wheel=0.37.1=pyhd3eb1b0_0 - x264=1!157.20191217=h7b6447c_0 - - xz=5.2.5=h7f8727e_1 + - xz=5.2.6=h5eee18b_0 - zlib=1.2.12=h5eee18b_3 - zstd=1.5.2=ha4553b6_0 - pip: @@ -78,7 +78,7 @@ dependencies: - async-timeout==4.0.2 - attrs==22.1.0 - azure-common==1.1.28 - - azure-core==1.25.1 + - azure-core==1.26.0 - azure-graphrbac==0.61.1 - azure-identity==1.7.0 - azure-mgmt-authorization==0.61.0 @@ -109,7 +109,7 @@ dependencies: - backports-tempfile==1.0 - backports-weakref==1.0.post1 - beautifulsoup4==4.11.1 - - black==22.8.0 + - black==22.10.0 - bleach==5.0.1 - cachetools==4.2.4 - cffi==1.15.1 @@ -120,7 +120,7 @@ dependencies: - commonmark==0.9.1 - conda-merge==0.1.5 - contextlib2==21.6.0 - - coverage==6.4.4 + - coverage==6.5.0 - cryptography==3.3.2 - cycler==0.11.0 - databricks-cli==0.17.3 @@ -128,7 +128,7 @@ dependencies: - debugpy==1.6.3 - defusedxml==0.7.1 - deprecated==1.2.13 - - distro==1.7.0 + - distro==1.8.0 - docker==4.3.1 - docutils==0.18.1 - dotnetcore2==2.1.23 @@ -147,7 +147,7 @@ dependencies: - google-auth==1.35.0 - google-auth-oauthlib==0.4.6 - gputil==1.4.0 - - greenlet==1.1.3 + - greenlet==1.1.3.post0 - grpcio==1.49.1 - gunicorn==20.1.0 - h5py==2.10.0 @@ -157,10 +157,10 @@ dependencies: - idna==3.4 - imageio==2.15.0 - imagesize==1.4.1 - - importlib-metadata==4.12.0 - - importlib-resources==5.9.0 + - importlib-metadata==5.0.0 + - importlib-resources==5.10.0 - iniconfig==1.1.1 - - innereye-dicom-rt==1.0.3 + - innereye-dicom-rt==1.1.0 - ipykernel==6.16.0 - ipython==7.31.1 - ipython-genutils==0.2.0 @@ -182,7 +182,6 @@ dependencies: - kiwisolver==1.4.4 - lightning-bolts==0.4.0 - llvmlite==0.34.0 - - lxml==4.9.1 - mako==1.2.3 - markdown==3.4.1 - markdown-it-py==2.1.0 @@ -198,7 +197,7 @@ dependencies: - mlflow-skinny==1.29.0 - monai==0.6.0 - more-itertools==8.14.0 - - msal==1.19.0 + - msal==1.20.0 - msal-extensions==0.3.1 - msrest==0.7.1 - msrestazure==0.6.4 @@ -206,12 +205,12 @@ dependencies: - mypy==0.910 - mypy-extensions==0.4.3 - myst-parser==0.18.0 - - nbclient==0.6.8 - - nbconvert==7.0.0 - - nbformat==5.6.1 + - nbclient==0.7.0 + - nbconvert==7.2.1 + - nbformat==5.7.0 - ndg-httpsclient==0.5.1 - - nest-asyncio==1.5.5 - - networkx==2.8.6 + - nest-asyncio==1.5.6 + - networkx==2.8.7 - nibabel==4.0.2 - notebook==6.4.12 - numba==0.51.2 @@ -256,12 +255,12 @@ dependencies: - pytest-xdist==1.34.0 - python-dateutil==2.8.2 - pytorch-lightning==1.6.5 - - pytz==2022.2.1 + - pytz==2022.4 - pywavelets==1.4.1 - pyyaml==6.0 - pyzmq==24.0.1 - qtconsole==5.3.2 - - qtpy==2.2.0 + - qtpy==2.2.1 - querystring-parser==1.2.4 - requests==2.28.1 - requests-oauthlib==1.3.1 @@ -284,7 +283,7 @@ dependencies: - soupsieve==2.3.2.post1 - sphinx==5.0.2 - sphinx-argparse==0.3.1 - - sphinx-basic-ng==0.0.1a12 + - sphinx-basic-ng==1.0.0b1 - sphinx-rtd-theme==1.0.0 - sphinxcontrib-applehelp==1.0.2 - sphinxcontrib-devhelp==1.0.2 @@ -301,10 +300,10 @@ dependencies: - tensorboard==2.3.0 - tensorboard-plugin-wit==1.8.1 - tensorboardx==2.1 - - terminado==0.15.0 + - terminado==0.16.0 - textwrap3==0.9.2 - threadpoolctl==3.1.0 - - tifffile==2022.8.12 + - tifffile==2022.10.10 - tinycss2==1.1.1 - toml==0.10.2 - tomli==2.0.1 @@ -322,4 +321,4 @@ dependencies: - wrapt==1.14.1 - yacs==0.1.8 - yarl==1.8.1 - - zipp==3.8.1 + - zipp==3.9.0 diff --git a/primary_deps.yml b/primary_deps.yml index af20b0cb7..8cb63b94d 100644 --- a/primary_deps.yml +++ b/primary_deps.yml @@ -31,7 +31,7 @@ dependencies: - hi-ml==0.2.5 - hi-ml-azure==0.2.5 - imageio==2.15.0 - - InnerEye-DICOM-RT==1.0.3 + - InnerEye-DICOM-RT==1.1.0 - ipython==7.31.1 - joblib==0.16.0 - jupyter-client==6.1.5