diff --git a/airflow/providers/amazon/aws/operators/s3.py b/airflow/providers/amazon/aws/operators/s3.py
index a3f9c9245e041..f2733495efc05 100644
--- a/airflow/providers/amazon/aws/operators/s3.py
+++ b/airflow/providers/amazon/aws/operators/s3.py
@@ -610,6 +610,7 @@ class S3FileTransformOperator(BaseOperator):
     :param dest_s3_key: The key to be written from S3. (templated)
     :param transform_script: location of the executable transformation script
     :param select_expression: S3 Select expression
+    :param select_expr_serialization_config: A dictionary that contains input and output serialization configurations for S3 Select.
     :param script_args: arguments for transformation script (templated)
     :param source_aws_conn_id: source s3 connection
     :param source_verify: Whether or not to verify SSL certificates for S3 connection.
@@ -641,6 +642,7 @@ def __init__(
         dest_s3_key: str,
         transform_script: str | None = None,
         select_expression=None,
+        select_expr_serialization_config: dict[str, dict[str, dict]] | None = None,
         script_args: Sequence[str] | None = None,
         source_aws_conn_id: str | None = "aws_default",
         source_verify: bool | str | None = None,
@@ -659,6 +661,7 @@ def __init__(
         self.replace = replace
         self.transform_script = transform_script
         self.select_expression = select_expression
+        self.select_expr_serialization_config = select_expr_serialization_config or {}
         self.script_args = script_args or []
         self.output_encoding = sys.getdefaultencoding()
 
@@ -678,7 +681,14 @@ def execute(self, context: Context):
             self.log.info("Dumping S3 file %s contents to local file %s", self.source_s3_key, f_source.name)
 
             if self.select_expression is not None:
-                content = source_s3.select_key(key=self.source_s3_key, expression=self.select_expression)
+                input_serialization = self.select_expr_serialization_config.get("input_serialization")
+                output_serialization = self.select_expr_serialization_config.get("output_serialization")
+                content = source_s3.select_key(
+                    key=self.source_s3_key,
+                    expression=self.select_expression,
+                    input_serialization=input_serialization,
+                    output_serialization=output_serialization,
+                )
                 f_source.write(content.encode("utf-8"))
             else:
                 source_s3_key_object.download_fileobj(Fileobj=f_source)
diff --git a/tests/providers/amazon/aws/operators/test_s3.py b/tests/providers/amazon/aws/operators/test_s3.py
index e2cf5d3543eaa..5e4bbffbd07d9 100644
--- a/tests/providers/amazon/aws/operators/test_s3.py
+++ b/tests/providers/amazon/aws/operators/test_s3.py
@@ -284,6 +284,8 @@ def test_execute_with_transform_script_args(self, mock_popen):
     def test_execute_with_select_expression(self, mock_select_key):
         input_path, output_path = self.s3_paths()
         select_expression = "SELECT * FROM s3object s"
+        input_serialization = None
+        output_serialization = None
 
         op = S3FileTransformOperator(
             source_s3_key=input_path,
@@ -294,7 +296,45 @@ def test_execute_with_select_expression(self, mock_select_key):
         )
         op.execute(None)
 
-        mock_select_key.assert_called_once_with(key=input_path, expression=select_expression)
+        mock_select_key.assert_called_once_with(
+            key=input_path,
+            expression=select_expression,
+            input_serialization=input_serialization,
+            output_serialization=output_serialization,
+        )
+
+        conn = boto3.client("s3")
+        result = conn.get_object(Bucket=self.bucket, Key=self.output_key)
+        assert self.content == result["Body"].read()
+
+    @mock.patch("airflow.providers.amazon.aws.hooks.s3.S3Hook.select_key", return_value="input")
+    @mock_aws
+    def test_execute_with_select_expression_and_serialization_config(self, mock_select_key):
+        input_path, output_path = self.s3_paths()
+        select_expression = "SELECT * FROM s3object s"
+        select_expr_serialization_config = {
+            "input_serialization": {"CSV": {}},
+            "output_serialization": {"CSV": {}},
+        }
+
+        op = S3FileTransformOperator(
+            source_s3_key=input_path,
+            dest_s3_key=output_path,
+            select_expression=select_expression,
+            select_expr_serialization_config=select_expr_serialization_config,
+            replace=True,
+            task_id="task_id",
+        )
+        op.execute(None)
+
+        input_serialization = select_expr_serialization_config.get("input_serialization")
+        output_serialization = select_expr_serialization_config.get("output_serialization")
+        mock_select_key.assert_called_once_with(
+            key=input_path,
+            expression=select_expression,
+            input_serialization=input_serialization,
+            output_serialization=output_serialization,
+        )
 
         conn = boto3.client("s3")
         result = conn.get_object(Bucket=self.bucket, Key=self.output_key)