Target Gene Test Updates

Author: bencap

tests/view_models/test_target_gene.py

@@ -5,7 +5,7 @@
 
 def test_create_target_gene_with_sequence():
     name = "UBE2I"
-    category = "Regulatory"
+    category = "regulatory"
     external_identifiers = [{"identifier": {"dbName": "Ensembl", "identifier": "ENSG00000103275"}, "offset": 1}]
     target_sequence = {
         "sequenceType": "dna",
@@ -37,12 +37,12 @@ def test_create_target_gene_with_sequence():
         target_sequence=target_sequence,
     )
     assert externalIdentifier.name == "UBE2I"
-    assert externalIdentifier.category == "Regulatory"
+    assert externalIdentifier.category == "regulatory"
 
 
 def test_create_target_gene_with_accession():
     name = "BRCA1"
-    category = "Regulatory"
+    category = "regulatory"
     external_identifiers = [{"identifier": {"dbName": "Ensembl", "identifier": "ENSG00000103275"}, "offset": 1}]
     target_accession = {"accession": "NM_001637.3", "assembly": "GRCh37", "gene": "BRCA1"}
     externalIdentifier = TargetGeneCreate(
@@ -52,7 +52,7 @@ def test_create_target_gene_with_accession():
         target_accession=target_accession,
     )
     assert externalIdentifier.name == "BRCA1"
-    assert externalIdentifier.category == "Regulatory"
+    assert externalIdentifier.category == "regulatory"
 
 
 def test_create_invalid_category():
@@ -91,14 +91,14 @@ def test_create_invalid_category():
             target_sequence=target_sequence,
         )
     assert (
-        "invalid name is not a valid target category. Valid categories are Protein coding, Regulatory, and Other"
-        " noncoding" in str(exc_info.value)
+        "value is not a valid enumeration member; permitted: 'protein_coding', 'regulatory', 'other_noncoding'"
+        in str(exc_info.value)
     )
 
 
 def test_create_invalid_sequence_type():
     name = "UBE2I"
-    category = "Regulatory"
+    category = "regulatory"
     external_identifiers = [{"identifier": {"dbName": "Ensembl", "identifier": "ENSG00000103275"}, "offset": 0}]
     taxonomy = {
         "taxId": 9606,
@@ -136,7 +136,7 @@ def test_create_invalid_sequence_type():
 
 def test_create_not_match_sequence_and_type():
     name = "UBE2I"
-    category = "Regulatory"
+    category = "regulatory"
     external_identifiers = [{"identifier": {"dbName": "Ensembl", "identifier": "ENSG00000103275"}, "offset": 0}]
     target_sequence = {"sequenceType": "dna", "sequence": "ARCG"}
     taxonomy = {
@@ -163,7 +163,7 @@ def test_create_not_match_sequence_and_type():
 
 def test_create_invalid_sequence():
     name = "UBE2I"
-    category = "Regulatory"
+    category = "regulatory"
     external_identifiers = [{"identifier": {"dbName": "Ensembl", "identifier": "ENSG00000103275"}, "offset": 0}]
     target_sequence = {"sequenceType": "dna", "sequence": "AOCG%"}
     taxonomy = {
@@ -190,7 +190,7 @@ def test_create_invalid_sequence():
 
 def test_cant_create_target_gene_without_sequence_or_accession():
     name = "UBE2I"
-    category = "Regulatory"
+    category = "regulatory"
     external_identifiers = [{"identifier": {"dbName": "Ensembl", "identifier": "ENSG00000103275"}, "offset": 1}]
     with pytest.raises(ValueError) as exc_info:
         TargetGeneCreate(
@@ -204,7 +204,7 @@ def test_cant_create_target_gene_without_sequence_or_accession():
 
 def test_cant_create_target_gene_with_both_sequence_and_accession():
     name = "UBE2I"
-    category = "Regulatory"
+    category = "regulatory"
     external_identifiers = [{"identifier": {"dbName": "Ensembl", "identifier": "ENSG00000103275"}, "offset": 1}]
     target_accession = {"accession": "NM_001637.3", "assembly": "GRCh37", "gene": "BRCA1"}
     target_sequence = {