Fix path pattern for rephased VCF files

Missing output file(s) `phasing_output/*.rephased.vcf.gz` expected by process `INTGENOMICSLAB_LRSOMATIC:LRSOMATIC:WAKHAN

Author: Tim-Yu

modules/local/wakhan/main.nf

@@ -32,8 +32,8 @@ process WAKHAN {
     tuple val(meta), path("coverage_plots/*.pdf")                               , emit: coverage_plots_pdf
     tuple val(meta), path("phasing_output/*.html")                              , emit: phasing_html
     tuple val(meta), path("phasing_output/*.pdf")                               , emit: phasing_pdf
-    tuple val(meta), path("phasing_output/*.rephased.vcf.gz")                   , emit: rephased_vcf
-    tuple val(meta), path("phasing_output/*.rephased.vcf.gz.csi")               , emit: rephased_vcf_index
+    tuple val(meta), path("phasing_output/*rephased.vcf.gz")                    , emit: rephased_vcf
+    tuple val(meta), path("phasing_output/*rephased.vcf.gz.csi")                , emit: rephased_vcf_index
     tuple val(meta), path("snps_loh_plots/*_genome_snps_ratio_loh.html")        , emit: snps_loh_plot,      optional: true
     tuple val(meta), path("solutions_ranks.tsv")                                , emit: solutions_ranks
     // WARN: Manually update version information as tool does not provide on CLI