lr_somatic/modules.json at dev · Tim-Yu/lr_somatic · GitHub

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{
    "name": "IntGenomicsLab/lrsomatic",
    "homePage": "https://github.com/IntGenomicsLab/lrsomatic",
    "repos": {
        "https://github.com/nf-core/modules.git": {
            "modules": {
                "nf-core": {
                    "ascat": {
                        "branch": "master",
                        "git_sha": "e753770db613ce014b3c4bc94f6cba443427b726",
                        "installed_by": ["modules"],
                        "patch": "modules/nf-core/ascat/ascat.diff"
                    },
                    "bcftools/concat": {
                        "branch": "master",
                        "git_sha": "345b60fff6a192d55c2a220ae413c57f29b698b7",
                        "installed_by": ["modules", "vcf_gather_bcftools"]
                    },
                    "bcftools/merge": {
                        "branch": "master",
                        "git_sha": "f17049e03697726ace7499d2fe342f892594f6f3",
                        "installed_by": ["modules"]
                    },
                    "bcftools/sort": {
                        "branch": "master",
                        "git_sha": "e753770db613ce014b3c4bc94f6cba443427b726",
                        "installed_by": ["vcf_gather_bcftools"],
                        "patch": "modules/nf-core/bcftools/sort/bcftools-sort.diff"
                    },
                    "ensemblvep/download": {
                        "branch": "master",
                        "git_sha": "0567eee9276d4a358e5f9f01c810a149fbd241f8",
                        "installed_by": ["modules"]
                    },
                    "ensemblvep/vep": {
                        "branch": "master",
                        "git_sha": "48ca3de1737b0144aa9fe05bea2b681f0ae45a95",
                        "installed_by": ["modules"],
                        "patch": "modules/nf-core/ensemblvep/vep/ensemblvep-vep.diff"
                    },
                    "longphase/haplotag": {
                        "branch": "master",
                        "git_sha": "e753770db613ce014b3c4bc94f6cba443427b726",
                        "installed_by": ["modules"]
                    },
                    "longphase/phase": {
                        "branch": "master",
                        "git_sha": "47983538e45e539f783ed8ab0d1c96d39df2af8f",
                        "installed_by": ["modules"],
                        "patch": "modules/nf-core/longphase/phase/longphase-phase.diff"
                    },
                    "minimap2/align": {
                        "branch": "master",
                        "git_sha": "41dfa3f7c0ffabb96a6a813fe321c6d1cc5b6e46",
                        "installed_by": ["modules"],
                        "patch": "modules/nf-core/minimap2/align/minimap2-align.diff"
                    },
                    "minimap2/index": {
                        "branch": "master",
                        "git_sha": "41dfa3f7c0ffabb96a6a813fe321c6d1cc5b6e46",
                        "installed_by": ["modules"]
                    },
                    "modkit/pileup": {
                        "branch": "master",
                        "git_sha": "e8557b97c1e0e3751c5615e1fdbc5e8671eccc76",
                        "installed_by": ["modules"]
                    },
                    "mosdepth": {
                        "branch": "master",
                        "git_sha": "e753770db613ce014b3c4bc94f6cba443427b726",
                        "installed_by": ["modules"]
                    },
                    "multiqc": {
                        "branch": "master",
                        "git_sha": "5bdb098216aaf5df9c3b6343e6204cd932503c16",
                        "installed_by": ["modules"]
                    },
                    "pigz/uncompress": {
                        "branch": "master",
                        "git_sha": "e753770db613ce014b3c4bc94f6cba443427b726",
                        "installed_by": ["modules"]
                    },
                    "samtools/cat": {
                        "branch": "master",
                        "git_sha": "c8be52dba1166c678e74cda9c3a3c221635c8bb1",
                        "installed_by": ["modules"]
                    },
                    "samtools/faidx": {
                        "branch": "master",
                        "git_sha": "9a48bce39a67e2cb34b8f125fc1d50f0ad98b616",
                        "installed_by": ["modules"]
                    },
                    "samtools/flagstat": {
                        "branch": "master",
                        "git_sha": "e334e12a1e985adc5ffc3fc78a68be1de711de45",
                        "installed_by": ["bam_stats_samtools"]
                    },
                    "samtools/idxstats": {
                        "branch": "master",
                        "git_sha": "c8be52dba1166c678e74cda9c3a3c221635c8bb1",
                        "installed_by": ["bam_stats_samtools"]
                    },
                    "samtools/index": {
                        "branch": "master",
                        "git_sha": "c8be52dba1166c678e74cda9c3a3c221635c8bb1",
                        "installed_by": ["modules"]
                    },
                    "samtools/stats": {
                        "branch": "master",
                        "git_sha": "5cb9a8694da0a0e550921636bb60bc8c56445fd7",
                        "installed_by": ["bam_stats_samtools"],
                        "patch": "modules/nf-core/samtools/stats/samtools-stats.diff"
                    },
                    "severus": {
                        "branch": "master",
                        "git_sha": "98a699d12b141aeb3d5da5c98ebd69a320ff350d",
                        "installed_by": ["modules"],
                        "patch": "modules/nf-core/severus/severus.diff"
                    },
                    "untar": {
                        "branch": "master",
                        "git_sha": "00ee87ebb541af0008596400ce6d5f66d79d5408",
                        "installed_by": ["modules"]
                    },
                    "unzip": {
                        "branch": "master",
                        "git_sha": "41dfa3f7c0ffabb96a6a813fe321c6d1cc5b6e46",
                        "installed_by": ["modules"]
                    },
                    "wget": {
                        "branch": "master",
                        "git_sha": "41dfa3f7c0ffabb96a6a813fe321c6d1cc5b6e46",
                        "installed_by": ["modules"]
                    }
                }
            },
            "subworkflows": {
                "nf-core": {
                    "bam_stats_samtools": {
                        "branch": "master",
                        "git_sha": "0b2435805036a16dcdcf21533632d956b8273ac4",
                        "installed_by": ["subworkflows"]
                    },
                    "utils_nextflow_pipeline": {
                        "branch": "master",
                        "git_sha": "05954dab2ff481bcb999f24455da29a5828af08d",
                        "installed_by": ["subworkflows"]
                    },
                    "utils_nfcore_pipeline": {
                        "branch": "master",
                        "git_sha": "65f5e638d901a51534c68fd5c1c19e8112fb4df1",
                        "installed_by": ["subworkflows"]
                    },
                    "utils_nfschema_plugin": {
                        "branch": "master",
                        "git_sha": "e753770db613ce014b3c4bc94f6cba443427b726",
                        "installed_by": ["subworkflows"]
                    }
                }
            }
        }
    }
}