diff --git a/arkane/data/B2PLYP.LOG b/arkane/data/B2PLYP.LOG new file mode 100755 index 00000000000..22ba50e9e52 --- /dev/null +++ b/arkane/data/B2PLYP.LOG @@ -0,0 +1,453 @@ + Entering Link 1 = C:\G09W\l1.exe PID= 20588. + + Copyright (c) 1988,1990,1992,1993,1995,1998,2003,2009,2013, + Gaussian, Inc. All Rights Reserved. + + This is part of the Gaussian(R) 09 program. It is based on + the Gaussian(R) 03 system (copyright 2003, Gaussian, Inc.), + the Gaussian(R) 98 system (copyright 1998, Gaussian, Inc.), + the Gaussian(R) 94 system (copyright 1995, Gaussian, Inc.), + the Gaussian 92(TM) system (copyright 1992, Gaussian, Inc.), + the Gaussian 90(TM) system (copyright 1990, Gaussian, Inc.), + the Gaussian 88(TM) system (copyright 1988, Gaussian, Inc.), + the Gaussian 86(TM) system (copyright 1986, Carnegie Mellon + University), and the Gaussian 82(TM) system (copyright 1983, + Carnegie Mellon University). Gaussian is a federally registered + trademark of Gaussian, Inc. + + This software contains proprietary and confidential information, + including trade secrets, belonging to Gaussian, Inc. + + This software is provided under written license and may be + used, copied, transmitted, or stored only in accord with that + written license. + + The following legend is applicable only to US Government + contracts under FAR: + + RESTRICTED RIGHTS LEGEND + + Use, reproduction and disclosure by the US Government is + subject to restrictions as set forth in subparagraphs (a) + and (c) of the Commercial Computer Software - Restricted + Rights clause in FAR 52.227-19. + + Gaussian, Inc. + 340 Quinnipiac St., Bldg. 40, Wallingford CT 06492 + + + --------------------------------------------------------------- + Warning -- This program may not be used in any manner that + competes with the business of Gaussian, Inc. or will provide + assistance to any competitor of Gaussian, Inc. The licensee + of this program is prohibited from giving any competitor of + Gaussian, Inc. access to this program. By using this program, + the user acknowledges that Gaussian, Inc. is engaged in the + business of creating and licensing software in the field of + computational chemistry and represents and warrants to the + licensee that it is not a competitor of Gaussian, Inc. and that + it will not use this program in any manner prohibited above. + --------------------------------------------------------------- + + + Cite this work as: + Gaussian 09, Revision D.01, + M. J. Frisch, G. W. Trucks, H. B. Schlegel, G. E. Scuseria, + M. A. Robb, J. R. Cheeseman, G. Scalmani, V. Barone, B. Mennucci, + G. A. Petersson, H. Nakatsuji, M. Caricato, X. Li, H. P. Hratchian, + A. F. Izmaylov, J. Bloino, G. Zheng, J. L. Sonnenberg, M. Hada, + M. Ehara, K. Toyota, R. Fukuda, J. Hasegawa, M. Ishida, T. Nakajima, + Y. Honda, O. Kitao, H. Nakai, T. Vreven, J. A. Montgomery, Jr., + J. E. Peralta, F. Ogliaro, M. Bearpark, J. J. Heyd, E. Brothers, + K. N. Kudin, V. N. Staroverov, T. Keith, R. Kobayashi, J. Normand, + K. Raghavachari, A. Rendell, J. C. Burant, S. S. Iyengar, J. Tomasi, + M. Cossi, N. Rega, J. M. Millam, M. Klene, J. E. Knox, J. B. Cross, + V. Bakken, C. Adamo, J. Jaramillo, R. Gomperts, R. E. Stratmann, + O. Yazyev, A. J. Austin, R. Cammi, C. Pomelli, J. W. Ochterski, + R. L. Martin, K. Morokuma, V. G. Zakrzewski, G. A. Voth, + P. Salvador, J. J. Dannenberg, S. Dapprich, A. D. Daniels, + O. Farkas, J. B. Foresman, J. V. Ortiz, J. Cioslowski, + and D. J. Fox, Gaussian, Inc., Wallingford CT, 2013. + + ****************************************** + Gaussian 09: IA32W-G09RevD.01 24-Apr-2013 + 07-Nov-2019 + ****************************************** + %chk=C:\Users\drana\Desktop\work\Scratch\G09\MarkG\Energy\G09\b3plyp.chk + --------------------------------- + #p b2plyp/3-21g geom=connectivity + --------------------------------- + 1/38=1,57=2/1; + 2/12=2,17=6,18=5,40=1/2; + 3/5=5,11=9,16=1,25=1,30=1,74=-47/1,2,3; + 4//1; + 5/5=2,38=5/2; + 8/10=1/1; + 9/16=-3/6; + 6/7=2,8=2,9=2,10=2/1; + 99/5=1,9=1/99; + Leave Link 1 at Thu Nov 07 11:12:24 2019, MaxMem= 0 cpu: 0.0 + (Enter C:\G09W\l101.exe) + ------------------- + Title Card Required + ------------------- + Symbolic Z-matrix: + Charge = 0 Multiplicity = 1 + C 1.29707 0.70607 0. + H 1.65373 -0.30274 0. + H 1.65374 1.21047 0.87365 + H 1.65374 1.21047 -0.87365 + H 0.22707 0.70608 0. + + NAtoms= 5 NQM= 5 NQMF= 0 NMMI= 0 NMMIF= 0 + NMic= 0 NMicF= 0. + Isotopes and Nuclear Properties: + (Nuclear quadrupole moments (NQMom) in fm**2, nuclear magnetic moments (NMagM) + in nuclear magnetons) + + Atom 1 2 3 4 5 + IAtWgt= 12 1 1 1 1 + AtmWgt= 12.0000000 1.0078250 1.0078250 1.0078250 1.0078250 + NucSpn= 0 1 1 1 1 + AtZEff= 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000 + NQMom= 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000 + NMagM= 0.0000000 2.7928460 2.7928460 2.7928460 2.7928460 + AtZNuc= 6.0000000 1.0000000 1.0000000 1.0000000 1.0000000 + Leave Link 101 at Thu Nov 07 11:12:24 2019, MaxMem= 33554432 cpu: 0.0 + (Enter C:\G09W\l202.exe) + Input orientation: + --------------------------------------------------------------------- + Center Atomic Atomic Coordinates (Angstroms) + Number Number Type X Y Z + --------------------------------------------------------------------- + 1 6 0 1.297071 0.706067 0.000000 + 2 1 0 1.653726 -0.302743 0.000000 + 3 1 0 1.653744 1.210465 0.873652 + 4 1 0 1.653744 1.210465 -0.873652 + 5 1 0 0.227071 0.706080 0.000000 + --------------------------------------------------------------------- + Distance matrix (angstroms): + 1 2 3 4 5 + 1 C 0.000000 + 2 H 1.070000 0.000000 + 3 H 1.070000 1.747302 0.000000 + 4 H 1.070000 1.747302 1.747303 0.000000 + 5 H 1.070000 1.747303 1.747303 1.747303 0.000000 + Stoichiometry CH4 + Framework group T[O(C),4C3(H)] + Deg. of freedom 1 + Full point group T NOp 12 + Largest Abelian subgroup D2 NOp 4 + Largest concise Abelian subgroup D2 NOp 4 + Standard orientation: + --------------------------------------------------------------------- + Center Atomic Atomic Coordinates (Angstroms) + Number Number Type X Y Z + --------------------------------------------------------------------- + 1 6 0 0.000000 0.000000 0.000000 + 2 1 0 0.617765 0.617765 0.617765 + 3 1 0 -0.617765 -0.617765 0.617765 + 4 1 0 -0.617765 0.617765 -0.617765 + 5 1 0 0.617765 -0.617765 -0.617765 + --------------------------------------------------------------------- + Rotational constants (GHZ): 164.2463759 164.2463759 164.2463759 + Leave Link 202 at Thu Nov 07 11:12:24 2019, MaxMem= 33554432 cpu: 0.0 + (Enter C:\G09W\l301.exe) + Standard basis: 3-21G (6D, 7F) + Ernie: Thresh= 0.10000D-02 Tol= 0.10000D-05 Strict=F. + There are 5 symmetry adapted cartesian basis functions of A symmetry. + There are 4 symmetry adapted cartesian basis functions of B1 symmetry. + There are 4 symmetry adapted cartesian basis functions of B2 symmetry. + There are 4 symmetry adapted cartesian basis functions of B3 symmetry. + There are 5 symmetry adapted basis functions of A symmetry. + There are 4 symmetry adapted basis functions of B1 symmetry. + There are 4 symmetry adapted basis functions of B2 symmetry. + There are 4 symmetry adapted basis functions of B3 symmetry. + 17 basis functions, 27 primitive gaussians, 17 cartesian basis functions + 5 alpha electrons 5 beta electrons + nuclear repulsion energy 13.6865184431 Hartrees. + IExCor= 419 DFT=T Ex+Corr=B2PLYP ExCW=0 ScaHFX= 0.530000 + ScaDFX= 0.470000 0.470000 0.730000 0.730000 ScalE2= 0.270000 0.270000 + IRadAn= 0 IRanWt= -1 IRanGd= 0 ICorTp=0 IEmpDi= 4 + NAtoms= 5 NActive= 5 NUniq= 2 SFac= 4.00D+00 NAtFMM= 60 NAOKFM=F Big=F + Integral buffers will be 262144 words long. + Regular integral format. + Two-electron integral symmetry is turned on. + Leave Link 301 at Thu Nov 07 11:12:24 2019, MaxMem= 33554432 cpu: 0.0 + (Enter C:\G09W\l302.exe) + NPDir=0 NMtPBC= 1 NCelOv= 1 NCel= 1 NClECP= 1 NCelD= 1 + NCelK= 1 NCelE2= 1 NClLst= 1 CellRange= 0.0. + One-electron integrals computed using PRISM. + One-electron integral symmetry used in STVInt + NBasis= 17 RedAO= T EigKep= 4.03D-02 NBF= 5 4 4 4 + NBsUse= 17 1.00D-06 EigRej= -1.00D+00 NBFU= 5 4 4 4 + Precomputing XC quadrature grid using + IXCGrd= 4 IRadAn= 0 IRanWt= -1 IRanGd= 0 AccXCQ= 0.00D+00. + Generated NRdTot= 0 NPtTot= 0 NUsed= 0 NTot= 16 + NSgBfM= 17 17 17 17 17 MxSgAt= 5 MxSgA2= 5. + Leave Link 302 at Thu Nov 07 11:12:24 2019, MaxMem= 33554432 cpu: 0.0 + (Enter C:\G09W\l303.exe) + DipDrv: MaxL=1. + Leave Link 303 at Thu Nov 07 11:12:24 2019, MaxMem= 33554432 cpu: 0.0 + (Enter C:\G09W\l401.exe) + ExpMin= 1.83D-01 ExpMax= 1.72D+02 ExpMxC= 1.72D+02 IAcc=1 IRadAn= 1 AccDes= 0.00D+00 + Harris functional with IExCor= 419 and IRadAn= 1 diagonalized for initial guess. + HarFok: IExCor= 419 AccDes= 0.00D+00 IRadAn= 1 IDoV= 1 UseB2=F ITyADJ=14 + ICtDFT= 3500011 ScaDFX= 1.000000 1.000000 1.000000 1.000000 + FoFCou: FMM=F IPFlag= 0 FMFlag= 100000 FMFlg1= 0 + NFxFlg= 0 DoJE=T BraDBF=F KetDBF=T FulRan=T + wScrn= 0.000000 ICntrl= 500 IOpCl= 0 I1Cent= 200000004 NGrid= 0 + NMat0= 1 NMatS0= 1 NMatT0= 0 NMatD0= 1 NMtDS0= 0 NMtDT0= 0 + Petite list used in FoFCou. + Harris En= -40.3389689758633 + JPrj=0 DoOrth=F DoCkMO=F. + Initial guess orbital symmetries: + Occupied (A) (A) (T) (T) (T) + Virtual (A) (T) (T) (T) (T) (T) (T) (A) (T) (T) (T) (A) + The electronic state of the initial guess is 1-A. + Leave Link 401 at Thu Nov 07 11:12:24 2019, MaxMem= 33554432 cpu: 0.0 + (Enter C:\G09W\l502.exe) + Closed shell SCF: + Using DIIS extrapolation, IDIIS= 1040. + Integral symmetry usage will be decided dynamically. + Keep R1 ints in memory in symmetry-blocked form, NReq=887875. + IVT= 20113 IEndB= 20113 NGot= 33554432 MDV= 33530844 + LenX= 33530844 LenY= 33529962 + Requested convergence on RMS density matrix=1.00D-08 within 128 cycles. + Requested convergence on MAX density matrix=1.00D-06. + Requested convergence on energy=1.00D-06. + No special actions if energy rises. + FoFCou: FMM=F IPFlag= 0 FMFlag= 0 FMFlg1= 0 + NFxFlg= 0 DoJE=F BraDBF=F KetDBF=F FulRan=T + wScrn= 0.000000 ICntrl= 600 IOpCl= 0 I1Cent= 0 NGrid= 0 + NMat0= 1 NMatS0= 153 NMatT0= 0 NMatD0= 1 NMtDS0= 0 NMtDT0= 0 + Petite list used in FoFCou. + Integral accuracy reduced to 1.0D-05 until final iterations. + + Cycle 1 Pass 0 IDiag 1: + E= -40.0981649461019 + DIIS: error= 7.33D-02 at cycle 1 NSaved= 1. + NSaved= 1 IEnMin= 1 EnMin= -40.0981649461019 IErMin= 1 ErrMin= 7.33D-02 + ErrMax= 7.33D-02 0.00D+00 EMaxC= 1.00D-01 BMatC= 8.51D-02 BMatP= 8.51D-02 + IDIUse=3 WtCom= 2.67D-01 WtEn= 7.33D-01 + Coeff-Com: 0.100D+01 + Coeff-En: 0.100D+01 + Coeff: 0.100D+01 + Gap= 0.604 Goal= None Shift= 0.000 + GapD= 0.604 DampG=2.000 DampE=0.500 DampFc=1.0000 IDamp=-1. + RMSDP=2.40D-02 MaxDP=1.34D-01 OVMax= 1.46D-01 + + Cycle 2 Pass 0 IDiag 1: + E= -40.1434815728746 Delta-E= -0.045316626773 Rises=F Damp=F + DIIS: error= 4.84D-02 at cycle 2 NSaved= 2. + NSaved= 2 IEnMin= 2 EnMin= -40.1434815728746 IErMin= 2 ErrMin= 4.84D-02 + ErrMax= 4.84D-02 0.00D+00 EMaxC= 1.00D-01 BMatC= 4.17D-02 BMatP= 8.51D-02 + IDIUse=3 WtCom= 5.16D-01 WtEn= 4.84D-01 + Coeff-Com: 0.410D+00 0.590D+00 + Coeff-En: 0.278D+00 0.722D+00 + Coeff: 0.346D+00 0.654D+00 + Gap= 0.673 Goal= None Shift= 0.000 + RMSDP=1.04D-02 MaxDP=5.76D-02 DE=-4.53D-02 OVMax= 5.96D-02 + + Cycle 3 Pass 0 IDiag 1: + E= -40.1850864359784 Delta-E= -0.041604863104 Rises=F Damp=F + DIIS: error= 5.97D-03 at cycle 3 NSaved= 3. + NSaved= 3 IEnMin= 3 EnMin= -40.1850864359784 IErMin= 3 ErrMin= 5.97D-03 + ErrMax= 5.97D-03 0.00D+00 EMaxC= 1.00D-01 BMatC= 5.70D-04 BMatP= 4.17D-02 + IDIUse=3 WtCom= 9.40D-01 WtEn= 5.97D-02 + Coeff-Com: -0.217D-01 0.800D-01 0.942D+00 + Coeff-En: 0.000D+00 0.000D+00 0.100D+01 + Coeff: -0.204D-01 0.752D-01 0.945D+00 + Gap= 0.670 Goal= None Shift= 0.000 + RMSDP=1.05D-03 MaxDP=5.14D-03 DE=-4.16D-02 OVMax= 6.79D-03 + + Cycle 4 Pass 0 IDiag 1: + E= -40.1856477513352 Delta-E= -0.000561315357 Rises=F Damp=F + DIIS: error= 2.25D-04 at cycle 4 NSaved= 4. + NSaved= 4 IEnMin= 4 EnMin= -40.1856477513352 IErMin= 4 ErrMin= 2.25D-04 + ErrMax= 2.25D-04 0.00D+00 EMaxC= 1.00D-01 BMatC= 7.36D-07 BMatP= 5.70D-04 + IDIUse=3 WtCom= 9.98D-01 WtEn= 2.25D-03 + Coeff-Com: 0.110D-02-0.122D-01-0.794D-01 0.109D+01 + Coeff-En: 0.000D+00 0.000D+00 0.000D+00 0.100D+01 + Coeff: 0.110D-02-0.122D-01-0.792D-01 0.109D+01 + Gap= 0.671 Goal= None Shift= 0.000 + RMSDP=5.28D-05 MaxDP=4.28D-04 DE=-5.61D-04 OVMax= 2.69D-04 + + Cycle 5 Pass 0 IDiag 1: + E= -40.1856485017618 Delta-E= -0.000000750427 Rises=F Damp=F + DIIS: error= 7.43D-06 at cycle 5 NSaved= 5. + NSaved= 5 IEnMin= 5 EnMin= -40.1856485017618 IErMin= 5 ErrMin= 7.43D-06 + ErrMax= 7.43D-06 0.00D+00 EMaxC= 1.00D-01 BMatC= 3.93D-10 BMatP= 7.36D-07 + IDIUse=1 WtCom= 1.00D+00 WtEn= 0.00D+00 + Coeff-Com: 0.651D-04-0.118D-04-0.184D-02-0.487D-01 0.105D+01 + Coeff: 0.651D-04-0.118D-04-0.184D-02-0.487D-01 0.105D+01 + Gap= 0.671 Goal= None Shift= 0.000 + RMSDP=2.38D-06 MaxDP=2.80D-05 DE=-7.50D-07 OVMax= 1.27D-05 + + Initial convergence to 1.0D-05 achieved. Increase integral accuracy. + Cycle 6 Pass 1 IDiag 1: + E= -40.1856263419652 Delta-E= 0.000022159797 Rises=F Damp=F + DIIS: error= 5.73D-06 at cycle 1 NSaved= 1. + NSaved= 1 IEnMin= 1 EnMin= -40.1856263419652 IErMin= 1 ErrMin= 5.73D-06 + ErrMax= 5.73D-06 0.00D+00 EMaxC= 1.00D-01 BMatC= 7.33D-10 BMatP= 7.33D-10 + IDIUse=1 WtCom= 1.00D+00 WtEn= 0.00D+00 + Coeff-Com: 0.100D+01 + Coeff: 0.100D+01 + Gap= 0.671 Goal= None Shift= 0.000 + RMSDP=2.38D-06 MaxDP=2.80D-05 DE= 2.22D-05 OVMax= 1.43D-05 + + Cycle 7 Pass 1 IDiag 1: + E= -40.1856263434286 Delta-E= -0.000000001463 Rises=F Damp=F + DIIS: error= 8.41D-07 at cycle 2 NSaved= 2. + NSaved= 2 IEnMin= 2 EnMin= -40.1856263434286 IErMin= 2 ErrMin= 8.41D-07 + ErrMax= 8.41D-07 0.00D+00 EMaxC= 1.00D-01 BMatC= 2.32D-11 BMatP= 7.33D-10 + IDIUse=1 WtCom= 1.00D+00 WtEn= 0.00D+00 + Coeff-Com: -0.166D+00 0.117D+01 + Coeff: -0.166D+00 0.117D+01 + Gap= 0.671 Goal= None Shift= 0.000 + RMSDP=7.30D-07 MaxDP=3.31D-06 DE=-1.46D-09 OVMax= 2.51D-06 + + Cycle 8 Pass 1 IDiag 1: + E= -40.1856263434675 Delta-E= -0.000000000039 Rises=F Damp=F + DIIS: error= 3.89D-07 at cycle 3 NSaved= 3. + NSaved= 3 IEnMin= 3 EnMin= -40.1856263434675 IErMin= 3 ErrMin= 3.89D-07 + ErrMax= 3.89D-07 0.00D+00 EMaxC= 1.00D-01 BMatC= 2.47D-12 BMatP= 2.32D-11 + IDIUse=1 WtCom= 1.00D+00 WtEn= 0.00D+00 + Coeff-Com: -0.527D-01 0.385D+00 0.667D+00 + Coeff: -0.527D-01 0.385D+00 0.667D+00 + Gap= 0.671 Goal= None Shift= 0.000 + RMSDP=8.27D-08 MaxDP=3.67D-07 DE=-3.89D-11 OVMax= 5.24D-07 + + Cycle 9 Pass 1 IDiag 1: + E= -40.1856263434697 Delta-E= -0.000000000002 Rises=F Damp=F + DIIS: error= 7.84D-08 at cycle 4 NSaved= 4. + NSaved= 4 IEnMin= 4 EnMin= -40.1856263434697 IErMin= 4 ErrMin= 7.84D-08 + ErrMax= 7.84D-08 0.00D+00 EMaxC= 1.00D-01 BMatC= 8.09D-14 BMatP= 2.47D-12 + IDIUse=1 WtCom= 1.00D+00 WtEn= 0.00D+00 + Coeff-Com: 0.630D-02-0.570D-01 0.860D-01 0.965D+00 + Coeff: 0.630D-02-0.570D-01 0.860D-01 0.965D+00 + Gap= 0.671 Goal= None Shift= 0.000 + RMSDP=1.79D-08 MaxDP=1.53D-07 DE=-2.22D-12 OVMax= 9.13D-08 + + Cycle 10 Pass 1 IDiag 1: + E= -40.1856263434700 Delta-E= 0.000000000000 Rises=F Damp=F + DIIS: error= 2.74D-09 at cycle 5 NSaved= 5. + NSaved= 5 IEnMin= 5 EnMin= -40.1856263434700 IErMin= 5 ErrMin= 2.74D-09 + ErrMax= 2.74D-09 0.00D+00 EMaxC= 1.00D-01 BMatC= 4.76D-17 BMatP= 8.09D-14 + IDIUse=1 WtCom= 1.00D+00 WtEn= 0.00D+00 + Coeff-Com: -0.864D-03 0.808D-02-0.149D-01-0.160D+00 0.117D+01 + Coeff: -0.864D-03 0.808D-02-0.149D-01-0.160D+00 0.117D+01 + Gap= 0.671 Goal= None Shift= 0.000 + RMSDP=1.07D-09 MaxDP=1.34D-08 DE=-2.70D-13 OVMax= 6.04D-09 + + SCF Done: E(RB2PLYP) = -40.1856263435 A.U. after 10 cycles + NFock= 10 Conv=0.11D-08 -V/T= 2.0048 + KE= 3.999316782235D+01 PE=-1.199505132181D+02 EE= 2.608520060914D+01 + Leave Link 502 at Thu Nov 07 11:12:24 2019, MaxMem= 33554432 cpu: 0.0 + (Enter C:\G09W\l801.exe) + DoSCS=T DFT=T ScalE2(SS,OS)= 0.270000 0.270000 + ExpMin= 1.83D-01 ExpMax= 1.72D+02 ExpMxC= 1.72D+02 IAcc=3 IRadAn= 5 AccDes= 0.00D+00 + HarFok: IExCor= 205 AccDes= 0.00D+00 IRadAn= 5 IDoV=-2 UseB2=F ITyADJ=14 + ICtDFT= 12500011 ScaDFX= 1.000000 1.000000 1.000000 1.000000 + Largest valence mixing into a core orbital is 2.13D-04 + Largest core mixing into a valence orbital is 1.70D-05 + Range of M.O.s used for correlation: 2 17 + NBasis= 17 NAE= 5 NBE= 5 NFC= 1 NFV= 0 + NROrb= 16 NOA= 4 NOB= 4 NVA= 12 NVB= 12 + Leave Link 801 at Thu Nov 07 11:12:25 2019, MaxMem= 33554432 cpu: 0.0 + (Enter C:\G09W\l906.exe) + DoSCS=T DFT=T ScalE2(SS,OS)= 0.270000 0.270000 + FulOut=F Deriv=F AODrv=F NAtomX= 5 + MMem= 13705 MDisk= 4 MDiskD= 4 + W3Min= 816 MinDsk= 53041 NBas6D= 17 + NBas2D= 165 NTT= 153 LW2= 2000000 + MDV= 33549921 MDiskM= 19332 NBas2p= 87 + Fully in-core method, ICMem= 6034076. + IMap= 1 2 3 4 + JobTyp=1 Pass 1 fully in-core, NPsUse= 1. + Compute canonical integrals. + FoFCou: FMM=F IPFlag= 0 FMFlag= 0 FMFlg1= 0 + NFxFlg= 0 DoJE=F BraDBF=F KetDBF=F FulRan=T + wScrn= 0.000000 ICntrl= 600 IOpCl= 1 I1Cent= 0 NGrid= 0 + NMat0= 1 NMatS0= 165 NMatT0= 0 NMatD0= 1 NMtDS0= 0 NMtDT0= 0 + Symmetry not used in FoFCou. + Spin components of T(2) and E(2): + alpha-alpha T2 = 0.4192926533D-02 E2= -0.2630109372D-02 + alpha-beta T2 = 0.4324389502D-01 E2= -0.2690800998D-01 + beta-beta T2 = 0.4192926533D-02 E2= -0.2630109372D-02 + The integrals were generated 1 times. + E2(B2PLYP) = -0.3216822872D-01 E(B2PLYP) = -0.40217794572194D+02 + Leave Link 906 at Thu Nov 07 11:12:25 2019, MaxMem= 33554432 cpu: 0.0 + (Enter C:\G09W\l601.exe) + Copying SCF densities to generalized density rwf, IOpCl= 0 IROHF=0. + + ********************************************************************** + + Population analysis using the SCF density. + + ********************************************************************** + + Orbital symmetries: + Occupied (A) (A) (T) (T) (T) + Virtual (A) (T) (T) (T) (T) (T) (T) (A) (T) (T) (T) (A) + The electronic state is 1-A. + Alpha occ. eigenvalues -- -10.52823 -0.80292 -0.45801 -0.45801 -0.45801 + Alpha virt. eigenvalues -- 0.21250 0.26564 0.26564 0.26564 0.78536 + Alpha virt. eigenvalues -- 0.78536 0.78536 1.17819 1.19459 1.19459 + Alpha virt. eigenvalues -- 1.19459 1.81058 + Condensed to atoms (all electrons): + 1 2 3 4 5 + 1 C 5.310020 0.370976 0.370976 0.370976 0.370976 + 2 H 0.370976 0.510088 -0.026515 -0.026515 -0.026515 + 3 H 0.370976 -0.026515 0.510088 -0.026515 -0.026515 + 4 H 0.370976 -0.026515 -0.026515 0.510088 -0.026515 + 5 H 0.370976 -0.026515 -0.026515 -0.026515 0.510088 + Mulliken charges: + 1 + 1 C -0.793922 + 2 H 0.198480 + 3 H 0.198480 + 4 H 0.198480 + 5 H 0.198480 + Sum of Mulliken charges = 0.00000 + Mulliken charges with hydrogens summed into heavy atoms: + 1 + 1 C 0.000000 + Electronic spatial extent (au): = 34.7598 + Charge= 0.0000 electrons + Dipole moment (field-independent basis, Debye): + X= 0.0000 Y= 0.0000 Z= 0.0000 Tot= 0.0000 + Quadrupole moment (field-independent basis, Debye-Ang): + XX= -8.2521 YY= -8.2521 ZZ= -8.2521 + XY= 0.0000 XZ= 0.0000 YZ= 0.0000 + Traceless Quadrupole moment (field-independent basis, Debye-Ang): + XX= 0.0000 YY= 0.0000 ZZ= 0.0000 + XY= 0.0000 XZ= 0.0000 YZ= 0.0000 + Octapole moment (field-independent basis, Debye-Ang**2): + XXX= 0.0000 YYY= 0.0000 ZZZ= 0.0000 XYY= 0.0000 + XXY= 0.0000 XXZ= 0.0000 XZZ= 0.0000 YZZ= 0.0000 + YYZ= 0.0000 XYZ= 0.6859 + Hexadecapole moment (field-independent basis, Debye-Ang**3): + XXXX= -14.8440 YYYY= -14.8440 ZZZZ= -14.8440 XXXY= 0.0000 + XXXZ= 0.0000 YYYX= 0.0000 YYYZ= 0.0000 ZZZX= 0.0000 + ZZZY= 0.0000 XXYY= -4.5291 XXZZ= -4.5291 YYZZ= -4.5291 + XXYZ= 0.0000 YYXZ= 0.0000 ZZXY= 0.0000 + N-N= 1.368651844314D+01 E-N=-1.199505132239D+02 KE= 3.999316782235D+01 + Symmetry A KE= 3.420467566746D+01 + Symmetry B1 KE= 1.929497384965D+00 + Symmetry B2 KE= 1.929497384965D+00 + Symmetry B3 KE= 1.929497384965D+00 + Leave Link 601 at Thu Nov 07 11:12:25 2019, MaxMem= 33554432 cpu: 0.0 + (Enter C:\G09W\l9999.exe) + 1|1|UNPC-DUMINDA-T480S|SP|RB2PLYP-FC|3-21G|C1H4|DRANA|07-Nov-2019|0||# + p b2plyp/3-21g geom=connectivity||Title Card Required||0,1|C,0,1.29707 + 111,0.70606695,0.|H,0,1.65372554,-0.30274306,0.|H,0,1.65374395,1.21046 + 514,0.8736515|H,0,1.65374395,1.21046514,-0.8736515|H,0,0.22707111,0.70 + 608013,0.||Version=IA32W-G09RevD.01|State=1-A|HF=-40.1856263|MP2=-40.2 + 177946|RMSD=1.070e-009|PG=T [O(C1),4C3(H1)]||@ + + + TRUST EVERYONE, BUT CUT THE CARDS. + Job cpu time: 0 days 0 hours 0 minutes 1.0 seconds. + File lengths (MBytes): RWF= 5 Int= 0 D2E= 0 Chk= 1 Scr= 1 + Normal termination of Gaussian 09 at Thu Nov 07 11:12:25 2019. diff --git a/arkane/data/UCCSDT_C_ATOM.LOG b/arkane/data/UCCSDT_C_ATOM.LOG new file mode 100755 index 00000000000..305c6e43787 --- /dev/null +++ b/arkane/data/UCCSDT_C_ATOM.LOG @@ -0,0 +1,364 @@ + Entering Link 1 = C:\G09W\l1.exe PID= 1288. + + Copyright (c) 1988,1990,1992,1993,1995,1998,2003,2009,2013, + Gaussian, Inc. All Rights Reserved. + + This is part of the Gaussian(R) 09 program. It is based on + the Gaussian(R) 03 system (copyright 2003, Gaussian, Inc.), + the Gaussian(R) 98 system (copyright 1998, Gaussian, Inc.), + the Gaussian(R) 94 system (copyright 1995, Gaussian, Inc.), + the Gaussian 92(TM) system (copyright 1992, Gaussian, Inc.), + the Gaussian 90(TM) system (copyright 1990, Gaussian, Inc.), + the Gaussian 88(TM) system (copyright 1988, Gaussian, Inc.), + the Gaussian 86(TM) system (copyright 1986, Carnegie Mellon + University), and the Gaussian 82(TM) system (copyright 1983, + Carnegie Mellon University). Gaussian is a federally registered + trademark of Gaussian, Inc. + + This software contains proprietary and confidential information, + including trade secrets, belonging to Gaussian, Inc. + + This software is provided under written license and may be + used, copied, transmitted, or stored only in accord with that + written license. + + The following legend is applicable only to US Government + contracts under FAR: + + RESTRICTED RIGHTS LEGEND + + Use, reproduction and disclosure by the US Government is + subject to restrictions as set forth in subparagraphs (a) + and (c) of the Commercial Computer Software - Restricted + Rights clause in FAR 52.227-19. + + Gaussian, Inc. + 340 Quinnipiac St., Bldg. 40, Wallingford CT 06492 + + + --------------------------------------------------------------- + Warning -- This program may not be used in any manner that + competes with the business of Gaussian, Inc. or will provide + assistance to any competitor of Gaussian, Inc. The licensee + of this program is prohibited from giving any competitor of + Gaussian, Inc. access to this program. By using this program, + the user acknowledges that Gaussian, Inc. is engaged in the + business of creating and licensing software in the field of + computational chemistry and represents and warrants to the + licensee that it is not a competitor of Gaussian, Inc. and that + it will not use this program in any manner prohibited above. + --------------------------------------------------------------- + + + Cite this work as: + Gaussian 09, Revision D.01, + M. J. Frisch, G. W. Trucks, H. B. Schlegel, G. E. Scuseria, + M. A. Robb, J. R. Cheeseman, G. Scalmani, V. Barone, B. Mennucci, + G. A. Petersson, H. Nakatsuji, M. Caricato, X. Li, H. P. Hratchian, + A. F. Izmaylov, J. Bloino, G. Zheng, J. L. Sonnenberg, M. Hada, + M. Ehara, K. Toyota, R. Fukuda, J. Hasegawa, M. Ishida, T. Nakajima, + Y. Honda, O. Kitao, H. Nakai, T. Vreven, J. A. Montgomery, Jr., + J. E. Peralta, F. Ogliaro, M. Bearpark, J. J. Heyd, E. Brothers, + K. N. Kudin, V. N. Staroverov, T. Keith, R. Kobayashi, J. Normand, + K. Raghavachari, A. Rendell, J. C. Burant, S. S. Iyengar, J. Tomasi, + M. Cossi, N. Rega, J. M. Millam, M. Klene, J. E. Knox, J. B. Cross, + V. Bakken, C. Adamo, J. Jaramillo, R. Gomperts, R. E. Stratmann, + O. Yazyev, A. J. Austin, R. Cammi, C. Pomelli, J. W. Ochterski, + R. L. Martin, K. Morokuma, V. G. Zakrzewski, G. A. Voth, + P. Salvador, J. J. Dannenberg, S. Dapprich, A. D. Daniels, + O. Farkas, J. B. Foresman, J. V. Ortiz, J. Cioslowski, + and D. J. Fox, Gaussian, Inc., Wallingford CT, 2013. + + ****************************************** + Gaussian 09: IA32W-G09RevD.01 24-Apr-2013 + 07-Nov-2019 + ****************************************** + %chk=C:\Users\drana\Desktop\work\Scratch\G09\MarkG\Energy\G09\uccsdt_C_atom.chk + ---------------------------------- + # uccsd(t)/3-21g geom=connectivity + ---------------------------------- + 1/38=1,57=2/1; + 2/12=2,17=6,18=5,40=1/2; + 3/5=5,11=2,16=1,25=1,30=1,116=2/1,2,3; + 4//1; + 5/5=2,38=5/2; + 8/6=4,9=120000,10=1/1,4; + 9/5=7,14=2/13; + 6/7=2,8=2,9=2,10=2/1; + 99/5=1,9=1/99; + ------------------- + Title Card Required + ------------------- + Symbolic Z-matrix: + Charge = 0 Multiplicity = 3 + C 1.0251 0.95711 0. + + Input orientation: + --------------------------------------------------------------------- + Center Atomic Atomic Coordinates (Angstroms) + Number Number Type X Y Z + --------------------------------------------------------------------- + 1 6 0 1.025105 0.957113 0.000000 + --------------------------------------------------------------------- + Stoichiometry C(3) + Framework group OH[O(C)] + Deg. of freedom 0 + Full point group OH NOp 48 + Largest Abelian subgroup D2H NOp 8 + Largest concise Abelian subgroup C1 NOp 1 + Standard orientation: + --------------------------------------------------------------------- + Center Atomic Atomic Coordinates (Angstroms) + Number Number Type X Y Z + --------------------------------------------------------------------- + 1 6 0 0.000000 0.000000 0.000000 + --------------------------------------------------------------------- + Standard basis: 3-21G (6D, 7F) + There are 3 symmetry adapted cartesian basis functions of AG symmetry. + There are 0 symmetry adapted cartesian basis functions of B1G symmetry. + There are 0 symmetry adapted cartesian basis functions of B2G symmetry. + There are 0 symmetry adapted cartesian basis functions of B3G symmetry. + There are 0 symmetry adapted cartesian basis functions of AU symmetry. + There are 2 symmetry adapted cartesian basis functions of B1U symmetry. + There are 2 symmetry adapted cartesian basis functions of B2U symmetry. + There are 2 symmetry adapted cartesian basis functions of B3U symmetry. + There are 3 symmetry adapted basis functions of AG symmetry. + There are 0 symmetry adapted basis functions of B1G symmetry. + There are 0 symmetry adapted basis functions of B2G symmetry. + There are 0 symmetry adapted basis functions of B3G symmetry. + There are 0 symmetry adapted basis functions of AU symmetry. + There are 2 symmetry adapted basis functions of B1U symmetry. + There are 2 symmetry adapted basis functions of B2U symmetry. + There are 2 symmetry adapted basis functions of B3U symmetry. + 9 basis functions, 15 primitive gaussians, 9 cartesian basis functions + 4 alpha electrons 2 beta electrons + nuclear repulsion energy 0.0000000000 Hartrees. + NAtoms= 1 NActive= 1 NUniq= 1 SFac= 1.00D+00 NAtFMM= 60 NAOKFM=F Big=F + Integral buffers will be 262144 words long. + Raffenetti 2 integral format. + Two-electron integral symmetry is turned on. + One-electron integrals computed using PRISM. + NBasis= 9 RedAO= T EigKep= 6.75D-01 NBF= 3 0 0 0 0 2 2 2 + NBsUse= 9 1.00D-06 EigRej= -1.00D+00 NBFU= 3 0 0 0 0 2 2 2 + ExpMin= 1.96D-01 ExpMax= 1.72D+02 ExpMxC= 1.72D+02 IAcc=1 IRadAn= 1 AccDes= 0.00D+00 + Harris functional with IExCor= 205 and IRadAn= 1 diagonalized for initial guess. + HarFok: IExCor= 205 AccDes= 0.00D+00 IRadAn= 1 IDoV= 1 UseB2=F ITyADJ=14 + ICtDFT= 3500011 ScaDFX= 1.000000 1.000000 1.000000 1.000000 + FoFCou: FMM=F IPFlag= 0 FMFlag= 100000 FMFlg1= 0 + NFxFlg= 0 DoJE=T BraDBF=F KetDBF=T FulRan=T + wScrn= 0.000000 ICntrl= 500 IOpCl= 0 I1Cent= 200000004 NGrid= 0 + NMat0= 1 NMatS0= 1 NMatT0= 0 NMatD0= 1 NMtDS0= 0 NMtDT0= 0 + Petite list used in FoFCou. + Initial guess orbital symmetries: + Alpha Orbitals: + Occupied (A1G) (A1G) (T1U) (T1U) + Virtual (T1U) (T1U) (T1U) (T1U) (A1G) + Beta Orbitals: + Occupied (A1G) (A1G) + Virtual (T1U) (T1U) (T1U) (T1U) (T1U) (T1U) (A1G) + Initial guess = 0.0000 = 0.0000 = 1.0000 = 2.0000 S= 1.0000 + Keep R1 and R2 ints in memory in symmetry-blocked form, NReq=822740. + Requested convergence on RMS density matrix=1.00D-08 within 128 cycles. + Requested convergence on MAX density matrix=1.00D-06. + Requested convergence on energy=1.00D-06. + No special actions if energy rises. + Density matrix breaks symmetry, PCut= 1.00D-04 + Density has only Abelian symmetry. + Density matrix breaks symmetry, PCut= 1.00D-07 + Density has only Abelian symmetry. + Density matrix breaks symmetry, PCut= 1.00D-07 + Density has only Abelian symmetry. + Density matrix breaks symmetry, PCut= 1.00D-07 + Density has only Abelian symmetry. + Density matrix breaks symmetry, PCut= 1.00D-07 + Density has only Abelian symmetry. + Density matrix breaks symmetry, PCut= 1.00D-07 + Density has only Abelian symmetry. + Density matrix breaks symmetry, PCut= 1.00D-07 + Density has only Abelian symmetry. + SCF Done: E(UHF) = -37.4810698326 A.U. after 6 cycles + NFock= 6 Conv=0.55D-08 -V/T= 2.0033 + = 0.0000 = 0.0000 = 1.0000 = 2.0010 S= 1.0003 + = 0.000000000000E+00 + Annihilation of the first spin contaminant: + S**2 before annihilation 2.0010, after 2.0000 + ExpMin= 1.96D-01 ExpMax= 1.72D+02 ExpMxC= 1.72D+02 IAcc=3 IRadAn= 5 AccDes= 0.00D+00 + HarFok: IExCor= 205 AccDes= 0.00D+00 IRadAn= 5 IDoV=-2 UseB2=F ITyADJ=14 + ICtDFT= 12500011 ScaDFX= 1.000000 1.000000 1.000000 1.000000 + Range of M.O.s used for correlation: 2 9 + NBasis= 9 NAE= 4 NBE= 2 NFC= 1 NFV= 0 + NROrb= 8 NOA= 3 NOB= 1 NVA= 5 NVB= 7 + Semi-Direct transformation. + ModeAB= 2 MOrb= 3 LenV= 33458373 + LASXX= 66 LTotXX= 66 LenRXX= 66 + LTotAB= 132 MaxLAS= 1080 LenRXY= 1080 + NonZer= 1368 LenScr= 1048064 LnRSAI= 0 + LnScr1= 0 LExtra= 0 Total= 1049210 + MaxDsk= -1 SrtSym= F ITran= 4 + JobTyp=1 Pass 1: I= 1 to 3. + (rs|ai) integrals will be sorted in core. + ModeAB= 2 MOrb= 1 LenV= 33458373 + LASXX= 28 LTotXX= 28 LenRXX= 360 + LTotAB= 20 MaxLAS= 360 LenRXY= 20 + NonZer= 456 LenScr= 1048064 LnRSAI= 0 + LnScr1= 0 LExtra= 0 Total= 1048444 + MaxDsk= -1 SrtSym= F ITran= 4 + JobTyp=2 Pass 1: I= 1 to 1. + (rs|ai) integrals will be sorted in core. + Spin components of T(2) and E(2): + alpha-alpha T2 = 0.1539858699D-02 E2= -0.4542240933D-02 + alpha-beta T2 = 0.8342095977D-02 E2= -0.1907164950D-01 + beta-beta T2 = 0.0000000000D+00 E2= 0.0000000000D+00 + ANorm= 0.1004928831D+01 + E2 = -0.2361389043D-01 EUMP2 = -0.37504683723025D+02 + (S**2,0)= 0.20010D+01 (S**2,1)= 0.20001D+01 + E(PUHF)= -0.37481383594D+02 E(PMP2)= -0.37504849457D+02 + Keep R2 and R3 ints in memory in symmetry-blocked form, NReq=802872. + Iterations= 50 Convergence= 0.100D-06 + Iteration Nr. 1 + ********************** + DD1Dir will call FoFMem 1 times, MxPair= 10 + NAB= 3 NAA= 3 NBB= 0. + E(PMP3)= -0.37512313510D+02 + MP4(R+Q)= 0.19195405D-03 + E3= -0.75521070D-02 EUMP3= -0.37512235830D+02 + E4(DQ)= -0.27959200D-02 UMP4(DQ)= -0.37515031750D+02 + E4(SDQ)= -0.28114103D-02 UMP4(SDQ)= -0.37515047240D+02 + DE(Corr)= -0.30974220E-01 E(Corr)= -37.512044053 + NORM(A)= 0.10116679D+01 + Iteration Nr. 2 + ********************** + DD1Dir will call FoFMem 1 times, MxPair= 10 + NAB= 3 NAA= 3 NBB= 0. + DE(Corr)= -0.34987698E-01 E(CORR)= -37.516057530 Delta=-4.01D-03 + NORM(A)= 0.10140179D+01 + Iteration Nr. 3 + ********************** + DD1Dir will call FoFMem 1 times, MxPair= 10 + NAB= 3 NAA= 3 NBB= 0. + DE(Corr)= -0.36028974E-01 E(CORR)= -37.517098807 Delta=-1.04D-03 + NORM(A)= 0.10142146D+01 + Iteration Nr. 4 + ********************** + DD1Dir will call FoFMem 1 times, MxPair= 10 + NAB= 3 NAA= 3 NBB= 0. + DE(Corr)= -0.36098709E-01 E(CORR)= -37.517168542 Delta=-6.97D-05 + NORM(A)= 0.10141609D+01 + Iteration Nr. 5 + ********************** + DD1Dir will call FoFMem 1 times, MxPair= 10 + NAB= 3 NAA= 3 NBB= 0. + DE(Corr)= -0.36075425E-01 E(CORR)= -37.517145257 Delta= 2.33D-05 + NORM(A)= 0.10141784D+01 + Iteration Nr. 6 + ********************** + DD1Dir will call FoFMem 1 times, MxPair= 10 + NAB= 3 NAA= 3 NBB= 0. + DE(Corr)= -0.36082625E-01 E(CORR)= -37.517152457 Delta=-7.20D-06 + NORM(A)= 0.10141757D+01 + Iteration Nr. 7 + ********************** + DD1Dir will call FoFMem 1 times, MxPair= 10 + NAB= 3 NAA= 3 NBB= 0. + DE(Corr)= -0.36081518E-01 E(CORR)= -37.517151351 Delta= 1.11D-06 + NORM(A)= 0.10141759D+01 + Iteration Nr. 8 + ********************** + DD1Dir will call FoFMem 1 times, MxPair= 10 + NAB= 3 NAA= 3 NBB= 0. + DE(Corr)= -0.36081594E-01 E(CORR)= -37.517151426 Delta=-7.52D-08 + NORM(A)= 0.10141759D+01 + Dominant configurations: + *********************** + Spin Case I J A B Value + ABAB 2 2 5 3 -0.136608D+00 + Largest amplitude= 1.37D-01 + Time for triples= 0.00 seconds. + T4(CCSD)= -0.30136292D-03 + T5(CCSD)= -0.16795075D-05 + CCSD(T)= -0.37517454469D+02 + + S**2, projected HF & approx projected MPn energies after annihilation of + unwanted spin states (see manual for definitions): + + spins (S**2,0) (S**2,1) PUHF PMP2 PMP3 PMP4 + annihilated + s+1 2.00000 2.00000 -37.481384 -37.504849 -37.512314 + + Discarding MO integrals. + + ********************************************************************** + + Population analysis using the SCF density. + + ********************************************************************** + + Orbital symmetries: + Alpha Orbitals: + Occupied (A1G) (A1G) (?A) (?A) + Virtual (?A) (?A) (?A) (?A) (A1G) + Beta Orbitals: + Occupied (A1G) (A1G) + Virtual (?A) (?A) (?A) (?A) (?A) (?A) (A1G) + Unable to determine electronic state: an orbital has unidentified symmetry. + Alpha occ. eigenvalues -- -11.27250 -0.81446 -0.42596 -0.42596 + Alpha virt. eigenvalues -- 0.05294 0.89798 0.89798 0.97612 1.24659 + Beta occ. eigenvalues -- -11.23139 -0.57527 + Beta virt. eigenvalues -- 0.10809 0.16273 0.16273 1.01164 1.06359 + Beta virt. eigenvalues -- 1.06359 1.33242 + Condensed to atoms (all electrons): + 1 + 1 C 6.000000 + Atomic-Atomic Spin Densities. + 1 + 1 C 2.000000 + Mulliken charges and spin densities: + 1 2 + 1 C 0.000000 2.000000 + Sum of Mulliken charges = 0.00000 2.00000 + Mulliken charges and spin densities with hydrogens summed into heavy atoms: + 1 2 + 1 C 0.000000 2.000000 + Electronic spatial extent (au): = 13.3032 + Charge= 0.0000 electrons + Dipole moment (field-independent basis, Debye): + X= 0.0000 Y= 0.0000 Z= 0.0000 Tot= 0.0000 + Quadrupole moment (field-independent basis, Debye-Ang): + XX= -4.7201 YY= -6.5866 ZZ= -6.5866 + XY= 0.0000 XZ= 0.0000 YZ= 0.0000 + Traceless Quadrupole moment (field-independent basis, Debye-Ang): + XX= 1.2443 YY= -0.6222 ZZ= -0.6222 + XY= 0.0000 XZ= 0.0000 YZ= 0.0000 + Octapole moment (field-independent basis, Debye-Ang**2): + XXX= 0.0000 YYY= 0.0000 ZZZ= 0.0000 XYY= 0.0000 + XXY= 0.0000 XXZ= 0.0000 XZZ= 0.0000 YZZ= 0.0000 + YYZ= 0.0000 XYZ= 0.0000 + Hexadecapole moment (field-independent basis, Debye-Ang**3): + XXXX= -4.1347 YYYY= -7.1820 ZZZZ= -7.1820 XXXY= 0.0000 + XXXZ= 0.0000 YYYX= 0.0000 YYYZ= 0.0000 ZZZX= 0.0000 + ZZZY= 0.0000 XXYY= -1.8861 XXZZ= -1.8861 YYZZ= -2.3940 + XXYZ= 0.0000 YYXZ= 0.0000 ZZXY= 0.0000 + N-N= 0.000000000000D+00 E-N=-8.757280191249D+01 KE= 3.735620893854D+01 + Symmetry AG KE= 3.487097636732D+01 + Symmetry B1G KE= 0.000000000000D+00 + Symmetry B2G KE= 0.000000000000D+00 + Symmetry B3G KE= 0.000000000000D+00 + Symmetry AU KE= 0.000000000000D+00 + Symmetry B1U KE= 1.242616285610D+00 + Symmetry B2U KE= 1.242616285610D+00 + Symmetry B3U KE= 4.658757089566D-33 + 1|1|UNPC-DUMINDA-T480S|SP|UCCSD(T)-FC|3-21G|C1(3)|DRANA|07-Nov-2019|0| + |# uccsd(t)/3-21g geom=connectivity||Title Card Required||0,3|C,0,1.02 + 510459,0.95711297,0.||Version=IA32W-G09RevD.01|HF=-37.4810698|MP2=-37. + 5046837|MP3=-37.5122358|MP4D=-37.5152237|MP4DQ=-37.5150318|PUHF=-37.48 + 13836|PMP2-0=-37.5048495|PMP3-0=-37.5123135|MP4SDQ=-37.5150472|CCSD=-3 + 7.5171514|CCSD(T)=-37.5174545|S2=2.000971|S2-1=2.000055|S2A=2.|RMSD=5. + 455e-009|PG=OH [O(C1)]||@ + + + TIME IS NATURE'S WAY OF MAKING SURE EVERYTHING + DOESN'T HAPPEN AT ONCE. + - WOODY ALLEN + Job cpu time: 0 days 0 hours 0 minutes 1.0 seconds. + File lengths (MBytes): RWF= 14 Int= 0 D2E= 0 Chk= 1 Scr= 1 + Normal termination of Gaussian 09 at Thu Nov 07 11:18:37 2019. diff --git a/arkane/data/UCCSD_C_ATOM.LOG b/arkane/data/UCCSD_C_ATOM.LOG new file mode 100755 index 00000000000..be58ef29998 --- /dev/null +++ b/arkane/data/UCCSD_C_ATOM.LOG @@ -0,0 +1,359 @@ + Entering Link 1 = C:\G09W\l1.exe PID= 24648. + + Copyright (c) 1988,1990,1992,1993,1995,1998,2003,2009,2013, + Gaussian, Inc. All Rights Reserved. + + This is part of the Gaussian(R) 09 program. It is based on + the Gaussian(R) 03 system (copyright 2003, Gaussian, Inc.), + the Gaussian(R) 98 system (copyright 1998, Gaussian, Inc.), + the Gaussian(R) 94 system (copyright 1995, Gaussian, Inc.), + the Gaussian 92(TM) system (copyright 1992, Gaussian, Inc.), + the Gaussian 90(TM) system (copyright 1990, Gaussian, Inc.), + the Gaussian 88(TM) system (copyright 1988, Gaussian, Inc.), + the Gaussian 86(TM) system (copyright 1986, Carnegie Mellon + University), and the Gaussian 82(TM) system (copyright 1983, + Carnegie Mellon University). Gaussian is a federally registered + trademark of Gaussian, Inc. + + This software contains proprietary and confidential information, + including trade secrets, belonging to Gaussian, Inc. + + This software is provided under written license and may be + used, copied, transmitted, or stored only in accord with that + written license. + + The following legend is applicable only to US Government + contracts under FAR: + + RESTRICTED RIGHTS LEGEND + + Use, reproduction and disclosure by the US Government is + subject to restrictions as set forth in subparagraphs (a) + and (c) of the Commercial Computer Software - Restricted + Rights clause in FAR 52.227-19. + + Gaussian, Inc. + 340 Quinnipiac St., Bldg. 40, Wallingford CT 06492 + + + --------------------------------------------------------------- + Warning -- This program may not be used in any manner that + competes with the business of Gaussian, Inc. or will provide + assistance to any competitor of Gaussian, Inc. The licensee + of this program is prohibited from giving any competitor of + Gaussian, Inc. access to this program. By using this program, + the user acknowledges that Gaussian, Inc. is engaged in the + business of creating and licensing software in the field of + computational chemistry and represents and warrants to the + licensee that it is not a competitor of Gaussian, Inc. and that + it will not use this program in any manner prohibited above. + --------------------------------------------------------------- + + + Cite this work as: + Gaussian 09, Revision D.01, + M. J. Frisch, G. W. Trucks, H. B. Schlegel, G. E. Scuseria, + M. A. Robb, J. R. Cheeseman, G. Scalmani, V. Barone, B. Mennucci, + G. A. Petersson, H. Nakatsuji, M. Caricato, X. Li, H. P. Hratchian, + A. F. Izmaylov, J. Bloino, G. Zheng, J. L. Sonnenberg, M. Hada, + M. Ehara, K. Toyota, R. Fukuda, J. Hasegawa, M. Ishida, T. Nakajima, + Y. Honda, O. Kitao, H. Nakai, T. Vreven, J. A. Montgomery, Jr., + J. E. Peralta, F. Ogliaro, M. Bearpark, J. J. Heyd, E. Brothers, + K. N. Kudin, V. N. Staroverov, T. Keith, R. Kobayashi, J. Normand, + K. Raghavachari, A. Rendell, J. C. Burant, S. S. Iyengar, J. Tomasi, + M. Cossi, N. Rega, J. M. Millam, M. Klene, J. E. Knox, J. B. Cross, + V. Bakken, C. Adamo, J. Jaramillo, R. Gomperts, R. E. Stratmann, + O. Yazyev, A. J. Austin, R. Cammi, C. Pomelli, J. W. Ochterski, + R. L. Martin, K. Morokuma, V. G. Zakrzewski, G. A. Voth, + P. Salvador, J. J. Dannenberg, S. Dapprich, A. D. Daniels, + O. Farkas, J. B. Foresman, J. V. Ortiz, J. Cioslowski, + and D. J. Fox, Gaussian, Inc., Wallingford CT, 2013. + + ****************************************** + Gaussian 09: IA32W-G09RevD.01 24-Apr-2013 + 07-Nov-2019 + ****************************************** + %chk=C:\Users\drana\Desktop\work\Scratch\G09\MarkG\Energy\G09\uccsd_C_atom.chk + ------------------------------- + # uccsd/3-21g geom=connectivity + ------------------------------- + 1/38=1,57=2/1; + 2/12=2,17=6,18=5,40=1/2; + 3/5=5,11=2,16=1,25=1,30=1,116=2/1,2,3; + 4//1; + 5/5=2,38=5/2; + 8/6=4,9=120000,10=1/1,4; + 9/5=7/13; + 6/7=2,8=2,9=2,10=2/1; + 99/5=1,9=1/99; + ------------------- + Title Card Required + ------------------- + Symbolic Z-matrix: + Charge = 0 Multiplicity = 3 + C 1.0251 0.95711 0. + + Input orientation: + --------------------------------------------------------------------- + Center Atomic Atomic Coordinates (Angstroms) + Number Number Type X Y Z + --------------------------------------------------------------------- + 1 6 0 1.025105 0.957113 0.000000 + --------------------------------------------------------------------- + Stoichiometry C(3) + Framework group OH[O(C)] + Deg. of freedom 0 + Full point group OH NOp 48 + Largest Abelian subgroup D2H NOp 8 + Largest concise Abelian subgroup C1 NOp 1 + Standard orientation: + --------------------------------------------------------------------- + Center Atomic Atomic Coordinates (Angstroms) + Number Number Type X Y Z + --------------------------------------------------------------------- + 1 6 0 0.000000 0.000000 0.000000 + --------------------------------------------------------------------- + Standard basis: 3-21G (6D, 7F) + There are 3 symmetry adapted cartesian basis functions of AG symmetry. + There are 0 symmetry adapted cartesian basis functions of B1G symmetry. + There are 0 symmetry adapted cartesian basis functions of B2G symmetry. + There are 0 symmetry adapted cartesian basis functions of B3G symmetry. + There are 0 symmetry adapted cartesian basis functions of AU symmetry. + There are 2 symmetry adapted cartesian basis functions of B1U symmetry. + There are 2 symmetry adapted cartesian basis functions of B2U symmetry. + There are 2 symmetry adapted cartesian basis functions of B3U symmetry. + There are 3 symmetry adapted basis functions of AG symmetry. + There are 0 symmetry adapted basis functions of B1G symmetry. + There are 0 symmetry adapted basis functions of B2G symmetry. + There are 0 symmetry adapted basis functions of B3G symmetry. + There are 0 symmetry adapted basis functions of AU symmetry. + There are 2 symmetry adapted basis functions of B1U symmetry. + There are 2 symmetry adapted basis functions of B2U symmetry. + There are 2 symmetry adapted basis functions of B3U symmetry. + 9 basis functions, 15 primitive gaussians, 9 cartesian basis functions + 4 alpha electrons 2 beta electrons + nuclear repulsion energy 0.0000000000 Hartrees. + NAtoms= 1 NActive= 1 NUniq= 1 SFac= 1.00D+00 NAtFMM= 60 NAOKFM=F Big=F + Integral buffers will be 262144 words long. + Raffenetti 2 integral format. + Two-electron integral symmetry is turned on. + One-electron integrals computed using PRISM. + NBasis= 9 RedAO= T EigKep= 6.75D-01 NBF= 3 0 0 0 0 2 2 2 + NBsUse= 9 1.00D-06 EigRej= -1.00D+00 NBFU= 3 0 0 0 0 2 2 2 + ExpMin= 1.96D-01 ExpMax= 1.72D+02 ExpMxC= 1.72D+02 IAcc=1 IRadAn= 1 AccDes= 0.00D+00 + Harris functional with IExCor= 205 and IRadAn= 1 diagonalized for initial guess. + HarFok: IExCor= 205 AccDes= 0.00D+00 IRadAn= 1 IDoV= 1 UseB2=F ITyADJ=14 + ICtDFT= 3500011 ScaDFX= 1.000000 1.000000 1.000000 1.000000 + FoFCou: FMM=F IPFlag= 0 FMFlag= 100000 FMFlg1= 0 + NFxFlg= 0 DoJE=T BraDBF=F KetDBF=T FulRan=T + wScrn= 0.000000 ICntrl= 500 IOpCl= 0 I1Cent= 200000004 NGrid= 0 + NMat0= 1 NMatS0= 1 NMatT0= 0 NMatD0= 1 NMtDS0= 0 NMtDT0= 0 + Petite list used in FoFCou. + Initial guess orbital symmetries: + Alpha Orbitals: + Occupied (A1G) (A1G) (T1U) (T1U) + Virtual (T1U) (T1U) (T1U) (T1U) (A1G) + Beta Orbitals: + Occupied (A1G) (A1G) + Virtual (T1U) (T1U) (T1U) (T1U) (T1U) (T1U) (A1G) + Initial guess = 0.0000 = 0.0000 = 1.0000 = 2.0000 S= 1.0000 + Keep R1 and R2 ints in memory in symmetry-blocked form, NReq=822740. + Requested convergence on RMS density matrix=1.00D-08 within 128 cycles. + Requested convergence on MAX density matrix=1.00D-06. + Requested convergence on energy=1.00D-06. + No special actions if energy rises. + Density matrix breaks symmetry, PCut= 1.00D-04 + Density has only Abelian symmetry. + Density matrix breaks symmetry, PCut= 1.00D-07 + Density has only Abelian symmetry. + Density matrix breaks symmetry, PCut= 1.00D-07 + Density has only Abelian symmetry. + Density matrix breaks symmetry, PCut= 1.00D-07 + Density has only Abelian symmetry. + Density matrix breaks symmetry, PCut= 1.00D-07 + Density has only Abelian symmetry. + Density matrix breaks symmetry, PCut= 1.00D-07 + Density has only Abelian symmetry. + Density matrix breaks symmetry, PCut= 1.00D-07 + Density has only Abelian symmetry. + SCF Done: E(UHF) = -37.4810698326 A.U. after 6 cycles + NFock= 6 Conv=0.55D-08 -V/T= 2.0033 + = 0.0000 = 0.0000 = 1.0000 = 2.0010 S= 1.0003 + = 0.000000000000E+00 + Annihilation of the first spin contaminant: + S**2 before annihilation 2.0010, after 2.0000 + ExpMin= 1.96D-01 ExpMax= 1.72D+02 ExpMxC= 1.72D+02 IAcc=3 IRadAn= 5 AccDes= 0.00D+00 + HarFok: IExCor= 205 AccDes= 0.00D+00 IRadAn= 5 IDoV=-2 UseB2=F ITyADJ=14 + ICtDFT= 12500011 ScaDFX= 1.000000 1.000000 1.000000 1.000000 + Range of M.O.s used for correlation: 2 9 + NBasis= 9 NAE= 4 NBE= 2 NFC= 1 NFV= 0 + NROrb= 8 NOA= 3 NOB= 1 NVA= 5 NVB= 7 + Semi-Direct transformation. + ModeAB= 2 MOrb= 3 LenV= 33458373 + LASXX= 66 LTotXX= 66 LenRXX= 66 + LTotAB= 132 MaxLAS= 1080 LenRXY= 1080 + NonZer= 1368 LenScr= 1048064 LnRSAI= 0 + LnScr1= 0 LExtra= 0 Total= 1049210 + MaxDsk= -1 SrtSym= F ITran= 4 + JobTyp=1 Pass 1: I= 1 to 3. + (rs|ai) integrals will be sorted in core. + ModeAB= 2 MOrb= 1 LenV= 33458373 + LASXX= 28 LTotXX= 28 LenRXX= 360 + LTotAB= 20 MaxLAS= 360 LenRXY= 20 + NonZer= 456 LenScr= 1048064 LnRSAI= 0 + LnScr1= 0 LExtra= 0 Total= 1048444 + MaxDsk= -1 SrtSym= F ITran= 4 + JobTyp=2 Pass 1: I= 1 to 1. + (rs|ai) integrals will be sorted in core. + Spin components of T(2) and E(2): + alpha-alpha T2 = 0.1539858699D-02 E2= -0.4542240933D-02 + alpha-beta T2 = 0.8342095977D-02 E2= -0.1907164950D-01 + beta-beta T2 = 0.0000000000D+00 E2= 0.0000000000D+00 + ANorm= 0.1004928831D+01 + E2 = -0.2361389043D-01 EUMP2 = -0.37504683723025D+02 + (S**2,0)= 0.20010D+01 (S**2,1)= 0.20001D+01 + E(PUHF)= -0.37481383594D+02 E(PMP2)= -0.37504849457D+02 + Keep R2 and R3 ints in memory in symmetry-blocked form, NReq=802872. + Iterations= 50 Convergence= 0.100D-06 + Iteration Nr. 1 + ********************** + DD1Dir will call FoFMem 1 times, MxPair= 10 + NAB= 3 NAA= 3 NBB= 0. + E(PMP3)= -0.37512313510D+02 + MP4(R+Q)= 0.19195405D-03 + E3= -0.75521070D-02 EUMP3= -0.37512235830D+02 + E4(DQ)= -0.27959200D-02 UMP4(DQ)= -0.37515031750D+02 + E4(SDQ)= -0.28114103D-02 UMP4(SDQ)= -0.37515047240D+02 + DE(Corr)= -0.30974220E-01 E(Corr)= -37.512044053 + NORM(A)= 0.10116679D+01 + Iteration Nr. 2 + ********************** + DD1Dir will call FoFMem 1 times, MxPair= 10 + NAB= 3 NAA= 3 NBB= 0. + DE(Corr)= -0.34987698E-01 E(CORR)= -37.516057530 Delta=-4.01D-03 + NORM(A)= 0.10140179D+01 + Iteration Nr. 3 + ********************** + DD1Dir will call FoFMem 1 times, MxPair= 10 + NAB= 3 NAA= 3 NBB= 0. + DE(Corr)= -0.36028974E-01 E(CORR)= -37.517098807 Delta=-1.04D-03 + NORM(A)= 0.10142146D+01 + Iteration Nr. 4 + ********************** + DD1Dir will call FoFMem 1 times, MxPair= 10 + NAB= 3 NAA= 3 NBB= 0. + DE(Corr)= -0.36098709E-01 E(CORR)= -37.517168542 Delta=-6.97D-05 + NORM(A)= 0.10141609D+01 + Iteration Nr. 5 + ********************** + DD1Dir will call FoFMem 1 times, MxPair= 10 + NAB= 3 NAA= 3 NBB= 0. + DE(Corr)= -0.36075425E-01 E(CORR)= -37.517145257 Delta= 2.33D-05 + NORM(A)= 0.10141784D+01 + Iteration Nr. 6 + ********************** + DD1Dir will call FoFMem 1 times, MxPair= 10 + NAB= 3 NAA= 3 NBB= 0. + DE(Corr)= -0.36082625E-01 E(CORR)= -37.517152457 Delta=-7.20D-06 + NORM(A)= 0.10141757D+01 + Iteration Nr. 7 + ********************** + DD1Dir will call FoFMem 1 times, MxPair= 10 + NAB= 3 NAA= 3 NBB= 0. + DE(Corr)= -0.36081518E-01 E(CORR)= -37.517151351 Delta= 1.11D-06 + NORM(A)= 0.10141759D+01 + Iteration Nr. 8 + ********************** + DD1Dir will call FoFMem 1 times, MxPair= 10 + NAB= 3 NAA= 3 NBB= 0. + DE(Corr)= -0.36081594E-01 E(CORR)= -37.517151426 Delta=-7.52D-08 + NORM(A)= 0.10141759D+01 + Dominant configurations: + *********************** + Spin Case I J A B Value + ABAB 2 2 5 3 -0.136608D+00 + Largest amplitude= 1.37D-01 + + S**2, projected HF & approx projected MPn energies after annihilation of + unwanted spin states (see manual for definitions): + + spins (S**2,0) (S**2,1) PUHF PMP2 PMP3 PMP4 + annihilated + s+1 2.00000 2.00000 -37.481384 -37.504849 -37.512314 + + Discarding MO integrals. + + ********************************************************************** + + Population analysis using the SCF density. + + ********************************************************************** + + Orbital symmetries: + Alpha Orbitals: + Occupied (A1G) (A1G) (?A) (?A) + Virtual (?A) (?A) (?A) (?A) (A1G) + Beta Orbitals: + Occupied (A1G) (A1G) + Virtual (?A) (?A) (?A) (?A) (?A) (?A) (A1G) + Unable to determine electronic state: an orbital has unidentified symmetry. + Alpha occ. eigenvalues -- -11.27250 -0.81446 -0.42596 -0.42596 + Alpha virt. eigenvalues -- 0.05294 0.89798 0.89798 0.97612 1.24659 + Beta occ. eigenvalues -- -11.23139 -0.57527 + Beta virt. eigenvalues -- 0.10809 0.16273 0.16273 1.01164 1.06359 + Beta virt. eigenvalues -- 1.06359 1.33242 + Condensed to atoms (all electrons): + 1 + 1 C 6.000000 + Atomic-Atomic Spin Densities. + 1 + 1 C 2.000000 + Mulliken charges and spin densities: + 1 2 + 1 C 0.000000 2.000000 + Sum of Mulliken charges = 0.00000 2.00000 + Mulliken charges and spin densities with hydrogens summed into heavy atoms: + 1 2 + 1 C 0.000000 2.000000 + Electronic spatial extent (au): = 13.3032 + Charge= 0.0000 electrons + Dipole moment (field-independent basis, Debye): + X= 0.0000 Y= 0.0000 Z= 0.0000 Tot= 0.0000 + Quadrupole moment (field-independent basis, Debye-Ang): + XX= -4.7201 YY= -6.5866 ZZ= -6.5866 + XY= 0.0000 XZ= 0.0000 YZ= 0.0000 + Traceless Quadrupole moment (field-independent basis, Debye-Ang): + XX= 1.2443 YY= -0.6222 ZZ= -0.6222 + XY= 0.0000 XZ= 0.0000 YZ= 0.0000 + Octapole moment (field-independent basis, Debye-Ang**2): + XXX= 0.0000 YYY= 0.0000 ZZZ= 0.0000 XYY= 0.0000 + XXY= 0.0000 XXZ= 0.0000 XZZ= 0.0000 YZZ= 0.0000 + YYZ= 0.0000 XYZ= 0.0000 + Hexadecapole moment (field-independent basis, Debye-Ang**3): + XXXX= -4.1347 YYYY= -7.1820 ZZZZ= -7.1820 XXXY= 0.0000 + XXXZ= 0.0000 YYYX= 0.0000 YYYZ= 0.0000 ZZZX= 0.0000 + ZZZY= 0.0000 XXYY= -1.8861 XXZZ= -1.8861 YYZZ= -2.3940 + XXYZ= 0.0000 YYXZ= 0.0000 ZZXY= 0.0000 + N-N= 0.000000000000D+00 E-N=-8.757280191249D+01 KE= 3.735620893854D+01 + Symmetry AG KE= 3.487097636732D+01 + Symmetry B1G KE= 0.000000000000D+00 + Symmetry B2G KE= 0.000000000000D+00 + Symmetry B3G KE= 0.000000000000D+00 + Symmetry AU KE= 0.000000000000D+00 + Symmetry B1U KE= 1.242616285610D+00 + Symmetry B2U KE= 1.242616285610D+00 + Symmetry B3U KE= 4.658757089566D-33 + 1|1|UNPC-DUMINDA-T480S|SP|UCCSD-FC|3-21G|C1(3)|DRANA|07-Nov-2019|0||# + uccsd/3-21g geom=connectivity||Title Card Required||0,3|C,0,1.02510459 + ,0.95711297,0.||Version=IA32W-G09RevD.01|HF=-37.4810698|MP2=-37.504683 + 7|MP3=-37.5122358|MP4D=-37.5152237|MP4DQ=-37.5150318|PUHF=-37.4813836| + PMP2-0=-37.5048495|PMP3-0=-37.5123135|MP4SDQ=-37.5150472|CCSD=-37.5171 + 514|S2=2.000971|S2-1=2.000055|S2A=2.|RMSD=5.455e-009|PG=OH [O(C1)]||@ + + + I am not a vegetarian because I love animals; + I am a vegetarian because I hate plants. + -- A. Whitney Brown + Job cpu time: 0 days 0 hours 0 minutes 2.0 seconds. + File lengths (MBytes): RWF= 14 Int= 0 D2E= 0 Chk= 1 Scr= 1 + Normal termination of Gaussian 09 at Thu Nov 07 16:40:06 2019. diff --git a/arkane/data/UMP2_C_ATOM.LOG b/arkane/data/UMP2_C_ATOM.LOG new file mode 100755 index 00000000000..b71d7a22a48 --- /dev/null +++ b/arkane/data/UMP2_C_ATOM.LOG @@ -0,0 +1,274 @@ + Entering Link 1 = C:\G09W\l1.exe PID= 24808. + + Copyright (c) 1988,1990,1992,1993,1995,1998,2003,2009,2013, + Gaussian, Inc. All Rights Reserved. + + This is part of the Gaussian(R) 09 program. It is based on + the Gaussian(R) 03 system (copyright 2003, Gaussian, Inc.), + the Gaussian(R) 98 system (copyright 1998, Gaussian, Inc.), + the Gaussian(R) 94 system (copyright 1995, Gaussian, Inc.), + the Gaussian 92(TM) system (copyright 1992, Gaussian, Inc.), + the Gaussian 90(TM) system (copyright 1990, Gaussian, Inc.), + the Gaussian 88(TM) system (copyright 1988, Gaussian, Inc.), + the Gaussian 86(TM) system (copyright 1986, Carnegie Mellon + University), and the Gaussian 82(TM) system (copyright 1983, + Carnegie Mellon University). Gaussian is a federally registered + trademark of Gaussian, Inc. + + This software contains proprietary and confidential information, + including trade secrets, belonging to Gaussian, Inc. + + This software is provided under written license and may be + used, copied, transmitted, or stored only in accord with that + written license. + + The following legend is applicable only to US Government + contracts under FAR: + + RESTRICTED RIGHTS LEGEND + + Use, reproduction and disclosure by the US Government is + subject to restrictions as set forth in subparagraphs (a) + and (c) of the Commercial Computer Software - Restricted + Rights clause in FAR 52.227-19. + + Gaussian, Inc. + 340 Quinnipiac St., Bldg. 40, Wallingford CT 06492 + + + --------------------------------------------------------------- + Warning -- This program may not be used in any manner that + competes with the business of Gaussian, Inc. or will provide + assistance to any competitor of Gaussian, Inc. The licensee + of this program is prohibited from giving any competitor of + Gaussian, Inc. access to this program. By using this program, + the user acknowledges that Gaussian, Inc. is engaged in the + business of creating and licensing software in the field of + computational chemistry and represents and warrants to the + licensee that it is not a competitor of Gaussian, Inc. and that + it will not use this program in any manner prohibited above. + --------------------------------------------------------------- + + + Cite this work as: + Gaussian 09, Revision D.01, + M. J. Frisch, G. W. Trucks, H. B. Schlegel, G. E. Scuseria, + M. A. Robb, J. R. Cheeseman, G. Scalmani, V. Barone, B. Mennucci, + G. A. Petersson, H. Nakatsuji, M. Caricato, X. Li, H. P. Hratchian, + A. F. Izmaylov, J. Bloino, G. Zheng, J. L. Sonnenberg, M. Hada, + M. Ehara, K. Toyota, R. Fukuda, J. Hasegawa, M. Ishida, T. Nakajima, + Y. Honda, O. Kitao, H. Nakai, T. Vreven, J. A. Montgomery, Jr., + J. E. Peralta, F. Ogliaro, M. Bearpark, J. J. Heyd, E. Brothers, + K. N. Kudin, V. N. Staroverov, T. Keith, R. Kobayashi, J. Normand, + K. Raghavachari, A. Rendell, J. C. Burant, S. S. Iyengar, J. Tomasi, + M. Cossi, N. Rega, J. M. Millam, M. Klene, J. E. Knox, J. B. Cross, + V. Bakken, C. Adamo, J. Jaramillo, R. Gomperts, R. E. Stratmann, + O. Yazyev, A. J. Austin, R. Cammi, C. Pomelli, J. W. Ochterski, + R. L. Martin, K. Morokuma, V. G. Zakrzewski, G. A. Voth, + P. Salvador, J. J. Dannenberg, S. Dapprich, A. D. Daniels, + O. Farkas, J. B. Foresman, J. V. Ortiz, J. Cioslowski, + and D. J. Fox, Gaussian, Inc., Wallingford CT, 2013. + + ****************************************** + Gaussian 09: IA32W-G09RevD.01 24-Apr-2013 + 07-Nov-2019 + ****************************************** + %chk=C:\Users\drana\Desktop\work\Scratch\G09\MarkG\Energy\G09\ump2_C_atom.chk + ------------------------------ + # ump2/3-21g geom=connectivity + ------------------------------ + 1/38=1,57=2/1; + 2/12=2,17=6,18=5,40=1/2; + 3/5=5,11=2,16=1,25=1,30=1,116=2/1,2,3; + 4//1; + 5/5=2,38=5/2; + 8/10=1/1; + 9/16=-3/6; + 6/7=2,8=2,9=2,10=2/1; + 99/5=1,9=1/99; + ------------------- + Title Card Required + ------------------- + Symbolic Z-matrix: + Charge = 0 Multiplicity = 3 + C 1.0251 0.95711 0. + + Input orientation: + --------------------------------------------------------------------- + Center Atomic Atomic Coordinates (Angstroms) + Number Number Type X Y Z + --------------------------------------------------------------------- + 1 6 0 1.025105 0.957113 0.000000 + --------------------------------------------------------------------- + Stoichiometry C(3) + Framework group OH[O(C)] + Deg. of freedom 0 + Full point group OH NOp 48 + Largest Abelian subgroup D2H NOp 8 + Largest concise Abelian subgroup C1 NOp 1 + Standard orientation: + --------------------------------------------------------------------- + Center Atomic Atomic Coordinates (Angstroms) + Number Number Type X Y Z + --------------------------------------------------------------------- + 1 6 0 0.000000 0.000000 0.000000 + --------------------------------------------------------------------- + Standard basis: 3-21G (6D, 7F) + There are 3 symmetry adapted cartesian basis functions of AG symmetry. + There are 0 symmetry adapted cartesian basis functions of B1G symmetry. + There are 0 symmetry adapted cartesian basis functions of B2G symmetry. + There are 0 symmetry adapted cartesian basis functions of B3G symmetry. + There are 0 symmetry adapted cartesian basis functions of AU symmetry. + There are 2 symmetry adapted cartesian basis functions of B1U symmetry. + There are 2 symmetry adapted cartesian basis functions of B2U symmetry. + There are 2 symmetry adapted cartesian basis functions of B3U symmetry. + There are 3 symmetry adapted basis functions of AG symmetry. + There are 0 symmetry adapted basis functions of B1G symmetry. + There are 0 symmetry adapted basis functions of B2G symmetry. + There are 0 symmetry adapted basis functions of B3G symmetry. + There are 0 symmetry adapted basis functions of AU symmetry. + There are 2 symmetry adapted basis functions of B1U symmetry. + There are 2 symmetry adapted basis functions of B2U symmetry. + There are 2 symmetry adapted basis functions of B3U symmetry. + 9 basis functions, 15 primitive gaussians, 9 cartesian basis functions + 4 alpha electrons 2 beta electrons + nuclear repulsion energy 0.0000000000 Hartrees. + NAtoms= 1 NActive= 1 NUniq= 1 SFac= 1.00D+00 NAtFMM= 60 NAOKFM=F Big=F + Integral buffers will be 262144 words long. + Raffenetti 2 integral format. + Two-electron integral symmetry is turned on. + One-electron integrals computed using PRISM. + NBasis= 9 RedAO= T EigKep= 6.75D-01 NBF= 3 0 0 0 0 2 2 2 + NBsUse= 9 1.00D-06 EigRej= -1.00D+00 NBFU= 3 0 0 0 0 2 2 2 + ExpMin= 1.96D-01 ExpMax= 1.72D+02 ExpMxC= 1.72D+02 IAcc=1 IRadAn= 1 AccDes= 0.00D+00 + Harris functional with IExCor= 205 and IRadAn= 1 diagonalized for initial guess. + HarFok: IExCor= 205 AccDes= 0.00D+00 IRadAn= 1 IDoV= 1 UseB2=F ITyADJ=14 + ICtDFT= 3500011 ScaDFX= 1.000000 1.000000 1.000000 1.000000 + FoFCou: FMM=F IPFlag= 0 FMFlag= 100000 FMFlg1= 0 + NFxFlg= 0 DoJE=T BraDBF=F KetDBF=T FulRan=T + wScrn= 0.000000 ICntrl= 500 IOpCl= 0 I1Cent= 200000004 NGrid= 0 + NMat0= 1 NMatS0= 1 NMatT0= 0 NMatD0= 1 NMtDS0= 0 NMtDT0= 0 + Petite list used in FoFCou. + Initial guess orbital symmetries: + Alpha Orbitals: + Occupied (A1G) (A1G) (T1U) (T1U) + Virtual (T1U) (T1U) (T1U) (T1U) (A1G) + Beta Orbitals: + Occupied (A1G) (A1G) + Virtual (T1U) (T1U) (T1U) (T1U) (T1U) (T1U) (A1G) + Initial guess = 0.0000 = 0.0000 = 1.0000 = 2.0000 S= 1.0000 + Keep R1 and R2 ints in memory in symmetry-blocked form, NReq=822740. + Requested convergence on RMS density matrix=1.00D-08 within 128 cycles. + Requested convergence on MAX density matrix=1.00D-06. + Requested convergence on energy=1.00D-06. + No special actions if energy rises. + Density matrix breaks symmetry, PCut= 1.00D-04 + Density has only Abelian symmetry. + Density matrix breaks symmetry, PCut= 1.00D-07 + Density has only Abelian symmetry. + Density matrix breaks symmetry, PCut= 1.00D-07 + Density has only Abelian symmetry. + Density matrix breaks symmetry, PCut= 1.00D-07 + Density has only Abelian symmetry. + Density matrix breaks symmetry, PCut= 1.00D-07 + Density has only Abelian symmetry. + Density matrix breaks symmetry, PCut= 1.00D-07 + Density has only Abelian symmetry. + Density matrix breaks symmetry, PCut= 1.00D-07 + Density has only Abelian symmetry. + SCF Done: E(UHF) = -37.4810698326 A.U. after 6 cycles + NFock= 6 Conv=0.55D-08 -V/T= 2.0033 + = 0.0000 = 0.0000 = 1.0000 = 2.0010 S= 1.0003 + = 0.000000000000E+00 + Annihilation of the first spin contaminant: + S**2 before annihilation 2.0010, after 2.0000 + ExpMin= 1.96D-01 ExpMax= 1.72D+02 ExpMxC= 1.72D+02 IAcc=3 IRadAn= 5 AccDes= 0.00D+00 + HarFok: IExCor= 205 AccDes= 0.00D+00 IRadAn= 5 IDoV=-2 UseB2=F ITyADJ=14 + ICtDFT= 12500011 ScaDFX= 1.000000 1.000000 1.000000 1.000000 + Range of M.O.s used for correlation: 2 9 + NBasis= 9 NAE= 4 NBE= 2 NFC= 1 NFV= 0 + NROrb= 8 NOA= 3 NOB= 1 NVA= 5 NVB= 7 + Fully in-core method, ICMem= 6005742. + JobTyp=2 Pass 1 fully in-core, NPsUse= 1. + Spin components of T(2) and E(2): + alpha-alpha T2 = 0.1539858699D-02 E2= -0.4542240933D-02 + alpha-beta T2 = 0.8342095977D-02 E2= -0.1907164950D-01 + beta-beta T2 = 0.0000000000D+00 E2= 0.0000000000D+00 + (S**2,0)= 0.20010D+01 (S**2,1)= 0.20001D+01 + E(PUHF)= -0.37481383594D+02 E(PMP2)= -0.37504849457D+02 + ANorm= 0.1004928831D+01 + E2 = -0.2361389043D-01 EUMP2 = -0.37504683723025D+02 + + ********************************************************************** + + Population analysis using the SCF density. + + ********************************************************************** + + Orbital symmetries: + Alpha Orbitals: + Occupied (A1G) (A1G) (?A) (?A) + Virtual (?A) (?A) (?A) (?A) (A1G) + Beta Orbitals: + Occupied (A1G) (A1G) + Virtual (?A) (?A) (?A) (?A) (?A) (?A) (A1G) + Unable to determine electronic state: an orbital has unidentified symmetry. + Alpha occ. eigenvalues -- -11.27250 -0.81446 -0.42596 -0.42596 + Alpha virt. eigenvalues -- 0.05294 0.89798 0.89798 0.97612 1.24659 + Beta occ. eigenvalues -- -11.23139 -0.57527 + Beta virt. eigenvalues -- 0.10809 0.16273 0.16273 1.01164 1.06359 + Beta virt. eigenvalues -- 1.06359 1.33242 + Condensed to atoms (all electrons): + 1 + 1 C 6.000000 + Atomic-Atomic Spin Densities. + 1 + 1 C 2.000000 + Mulliken charges and spin densities: + 1 2 + 1 C 0.000000 2.000000 + Sum of Mulliken charges = 0.00000 2.00000 + Mulliken charges and spin densities with hydrogens summed into heavy atoms: + 1 2 + 1 C 0.000000 2.000000 + Electronic spatial extent (au): = 13.3032 + Charge= 0.0000 electrons + Dipole moment (field-independent basis, Debye): + X= 0.0000 Y= 0.0000 Z= 0.0000 Tot= 0.0000 + Quadrupole moment (field-independent basis, Debye-Ang): + XX= -4.7201 YY= -6.5866 ZZ= -6.5866 + XY= 0.0000 XZ= 0.0000 YZ= 0.0000 + Traceless Quadrupole moment (field-independent basis, Debye-Ang): + XX= 1.2443 YY= -0.6222 ZZ= -0.6222 + XY= 0.0000 XZ= 0.0000 YZ= 0.0000 + Octapole moment (field-independent basis, Debye-Ang**2): + XXX= 0.0000 YYY= 0.0000 ZZZ= 0.0000 XYY= 0.0000 + XXY= 0.0000 XXZ= 0.0000 XZZ= 0.0000 YZZ= 0.0000 + YYZ= 0.0000 XYZ= 0.0000 + Hexadecapole moment (field-independent basis, Debye-Ang**3): + XXXX= -4.1347 YYYY= -7.1820 ZZZZ= -7.1820 XXXY= 0.0000 + XXXZ= 0.0000 YYYX= 0.0000 YYYZ= 0.0000 ZZZX= 0.0000 + ZZZY= 0.0000 XXYY= -1.8861 XXZZ= -1.8861 YYZZ= -2.3940 + XXYZ= 0.0000 YYXZ= 0.0000 ZZXY= 0.0000 + N-N= 0.000000000000D+00 E-N=-8.757280191249D+01 KE= 3.735620893854D+01 + Symmetry AG KE= 3.487097636732D+01 + Symmetry B1G KE= 0.000000000000D+00 + Symmetry B2G KE= 0.000000000000D+00 + Symmetry B3G KE= 0.000000000000D+00 + Symmetry AU KE= 0.000000000000D+00 + Symmetry B1U KE= 1.242616285610D+00 + Symmetry B2U KE= 1.242616285610D+00 + Symmetry B3U KE= 4.658757089566D-33 + 1|1|UNPC-DUMINDA-T480S|SP|UMP2-FC|3-21G|C1(3)|DRANA|07-Nov-2019|0||# u + mp2/3-21g geom=connectivity||Title Card Required||0,3|C,0,1.02510459,0 + .95711297,0.||Version=IA32W-G09RevD.01|HF=-37.4810698|MP2=-37.5046837| + PUHF=-37.4813836|PMP2-0=-37.5048495|S2=2.000971|S2-1=2.000055|S2A=2.|R + MSD=5.455e-009|PG=OH [O(C1)]||@ + + + I am not a vegetarian because I love animals; + I am a vegetarian because I hate plants. + -- A. Whitney Brown + Job cpu time: 0 days 0 hours 0 minutes 1.0 seconds. + File lengths (MBytes): RWF= 5 Int= 0 D2E= 0 Chk= 1 Scr= 1 + Normal termination of Gaussian 09 at Thu Nov 07 16:40:29 2019. diff --git a/arkane/gaussian.py b/arkane/gaussian.py index a514df546ac..13bedfc86e2 100644 --- a/arkane/gaussian.py +++ b/arkane/gaussian.py @@ -45,6 +45,7 @@ from arkane.exceptions import LogError from arkane.log import Log + ################################################################################ @@ -212,7 +213,7 @@ def load_conformer(self, symmetry=None, spin_multiplicity=0, optical_isomers=Non elif 'Rotational constant (GHZ):' in line: inertia = [float(line.split()[3])] inertia[0] = constants.h / (8 * constants.pi * constants.pi * inertia[0] * 1e9) \ - * constants.Na * 1e23 + * constants.Na * 1e23 rotation = LinearRotor(inertia=(inertia[0], "amu*angstrom^2"), symmetry=symmetry) modes.append(rotation) @@ -265,13 +266,26 @@ def load_energy(self, zpe_scale_factor=1.): CBS-QB3 value. """ e_elect, e0_composite, scaled_zpe = None, None, None - + elect_energy_source = '' with open(self.path, 'r') as f: line = f.readline() while line != '': if 'SCF Done:' in line: e_elect = float(line.split()[4]) * constants.E_h * constants.Na + elect_energy_source = 'SCF' + elif ' E2(' in line and ' E(' in line: + e_elect = float(line.split()[-1].replace('D', 'E')) * constants.E_h * constants.Na + elect_energy_source = 'doublehybrd or MP2' + elif 'MP2 =' in line: + e_elect = float(line.split()[-1].replace('D', 'E')) * constants.E_h * constants.Na + elect_energy_source = 'MP2' + elif 'E(CORR)=' in line: + e_elect = float(line.split()[3]) * constants.E_h * constants.Na + elect_energy_source = 'CCSD' + elif 'CCSD(T)= ' in line: + e_elect = float(line.split()[1].replace('D', 'E')) * constants.E_h * constants.Na + elect_energy_source = 'CCSD(T)' elif 'CBS-QB3 (0 K)' in line: e0_composite = float(line.split()[3]) * constants.E_h * constants.Na elif 'G3(0 K)' in line: @@ -294,10 +308,12 @@ def load_energy(self, zpe_scale_factor=1.): line = f.readline() if e0_composite is not None: + logging.debug("Using the composite energy from the gaussian output file") if scaled_zpe is None: raise LogError('Unable to find zero-point energy in Gaussian log file.') return e0_composite - scaled_zpe elif e_elect is not None: + logging.debug("Using the {0} energy from the gaussian output file".format(elect_energy_source)) return e_elect else: raise LogError('Unable to find energy in Gaussian log file.') diff --git a/arkane/gaussianTest.py b/arkane/gaussianTest.py index 3d60188f099..73c10ebe059 100644 --- a/arkane/gaussianTest.py +++ b/arkane/gaussianTest.py @@ -44,6 +44,7 @@ from arkane.statmech import determine_qm_software from arkane.exceptions import LogError + ################################################################################ @@ -81,6 +82,27 @@ def test_load_ethylene_from_gaussian_log_cbsqb3(self): self.assertEqual(conformer.spin_multiplicity, 1) self.assertEqual(conformer.optical_isomers, 1) + def test_gaussian_energies(self): + """ + test parsing double hydride, MP2, CCSD, CCSD(T) form Gaussian log + """ + log_doublehybrid = GaussianLog(os.path.join(os.path.dirname(__file__), 'data', 'B2PLYP.LOG')) + log_mp2 = GaussianLog(os.path.join(os.path.dirname(__file__), 'data', 'UMP2_C_ATOM.LOG')) + log_ccsd = GaussianLog(os.path.join(os.path.dirname(__file__), 'data', 'UCCSD_C_ATOM.LOG')) + log_ccsdt = GaussianLog(os.path.join(os.path.dirname(__file__), 'data', 'UCCSDT_C_ATOM.LOG')) + log_qb3 = GaussianLog(os.path.join(os.path.dirname(__file__), '../examples/arkane/species/C2H5/', 'ethyl_cbsqb3.log')) + + self.assertAlmostEqual(log_doublehybrid.load_energy() / constants.Na / constants.E_h, -0.40217794572194e+02, + delta=1e-6) + self.assertAlmostEqual(log_mp2.load_energy() / constants.Na / constants.E_h, -0.37504683723025e+02, + delta=1e-6) + self.assertAlmostEqual(log_ccsd.load_energy() / constants.Na / constants.E_h, -37.517151426, + delta=1e-6) + self.assertAlmostEqual(log_ccsdt.load_energy() / constants.Na / constants.E_h, -0.37517454469e+02, + delta=1e-6) + self.assertAlmostEqual(log_qb3.load_energy() / constants.Na / constants.E_h, -79.029798, + delta=1e-6) + def test_load_oxygen_from_gaussian_log(self): """ Uses a Gaussian03 log file for oxygen (O2) to test that its