echoannot/DESCRIPTION at main · RajLabMSSM/echoannot · GitHub

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Package: echoannot
Type: Package
Title: Echoverse Module: Annotate Fine-Mapping Results
Version: 1.0.1
Date: 2026-03-08
Authors@R:
    c(person(given = "Brian",
           family = "Schilder",
           role = c("aut","cre"),
           email = "brian_schilder@alumni.brown.edu",
           comment = c(ORCID = "0000-0001-5949-2191")),
    person(given = "Jack",
           family = "Humphrey",
           role = c("aut"),
           email = "Jack.Humphrey@mssm.edu",
           comment = c(ORCID = "0000-0002-6274-6620")),
    person(given = "Towfique",
           family = "Raj",
           role = c("aut"),
           email = "towfique.raj@mssm.edu",
           comment = c(ORCID = "0000-0002-9355-5704"))
           )
Description: Echoverse module: Functions for annotating genomic data
    with annotations and epigenomic data.
URL: https://github.com/RajLabMSSM/echoannot
BugReports: https://github.com/RajLabMSSM/echoannot/issues
Encoding: UTF-8
Depends: R (>= 4.1)
biocViews:
    Genetics, FunctionalGenomics, SystemsBiology
Imports:
    echodata,
    echotabix,
    downloadR,
    dplyr,
    stringr,
    data.table,
    utils,
    tools,
    methods,
    stats,
    tidyr,
    parallel,
    ggplot2,
    patchwork,
    ggbio,
    GenomicRanges,
    DescTools,
    grDevices,
    rtracklayer,
    S4Vectors,
    BiocGenerics,
    IRanges,
    rlang
Suggests:
    curl,
    XGR,
    markdown,
    rmarkdown,
    remotes,
    knitr,
    BiocStyle,
    badger,
    covr,
    testthat (>= 3.0.0),
    corrplot,
    pheatmap,
    haploR,
    biomaRt,
    regioneR,
    motifbreakR,
    MotifDb,
    BSgenome,
    SNPlocs.Hsapiens.dbSNP144.GRCh37,
    SNPlocs.Hsapiens.dbSNP144.GRCh38,
    BSgenome.Hsapiens.UCSC.hg19,
    BSgenome.Hsapiens.UCSC.hg38,
    BiocParallel,
    echoconda,
    echoLD,
    heatmaply,
    reshape2,
    R.utils
Remotes:
    github::RajLabMSSM/echodata,
    github::RajLabMSSM/echotabix,
    github::RajLabMSSM/downloadR,
    github::RajLabMSSM/echoconda,
    github::RajLabMSSM/echoLD
RoxygenNote: 7.3.3
VignetteBuilder: knitr
License: GPL-3
Config/testthat/edition: 3
LazyData: true