diff --git a/modules/decollate_batch.ipynb b/modules/decollate_batch.ipynb index 3b6fb136c9..c165b70e4f 100644 --- a/modules/decollate_batch.ipynb +++ b/modules/decollate_batch.ipynb @@ -76,11 +76,11 @@ "name": "stdout", "output_type": "stream", "text": [ - "MONAI version: 0.4.0+540.g8803885\n", + "MONAI version: 0.4.0+544.g5e7345d\n", "Numpy version: 1.21.0\n", "Pytorch version: 1.9.0+cu102\n", "MONAI flags: HAS_EXT = False, USE_COMPILED = False\n", - "MONAI rev id: 88038854f6cd256989695c2368e3ee9fca213e8d\n", + "MONAI rev id: 5e7345d384ae08011b0e250b93f615d6d5190258\n", "\n", "Optional dependencies:\n", "Pytorch Ignite version: 0.4.5\n", @@ -134,6 +134,7 @@ "from monai.transforms import (\n", " Activationsd,\n", " EnsureChannelFirstd,\n", + " EnsureTyped,\n", " AsDiscreted,\n", " Compose,\n", " Invertd,\n", @@ -142,7 +143,6 @@ " Resized,\n", " SaveImaged,\n", " ScaleIntensityd,\n", - " ToTensord,\n", ")\n", "from monai.utils import set_determinism\n", "\n", @@ -248,7 +248,7 @@ " Orientationd(keys=\"img\", axcodes=\"RAS\"),\n", " Resized(keys=\"img\", spatial_size=(96, 96, 96), mode=\"trilinear\", align_corners=True),\n", " ScaleIntensityd(keys=\"img\"),\n", - " ToTensord(keys=[\"img\", \"seg\"]),\n", + " EnsureTyped(keys=[\"img\", \"seg\"]),\n", " ]\n", ")\n", "dataset = Dataset(data=files, transform=preprocessing)\n", @@ -262,12 +262,12 @@ "## Setup postprocessing transforms, metrics\n", "Here we try to invert the preprocessing predictions for `pred` and save into Nifti files.\n", "\n", - "As all the post processing transforms expect `Tensor` input, apply `ToTensord` first to ensure the data type after `decollate_batch`." + "As all the post processing transforms expect `Tensor` input, apply `EnsureTyped` first to ensure the data type after `decollate_batch`." ] }, { "cell_type": "code", - "execution_count": 9, + "execution_count": 6, "metadata": { "tags": [] }, @@ -275,7 +275,7 @@ "source": [ "postprocessing = Compose(\n", " [\n", - " ToTensord(keys=[\"pred\", \"seg\"]), # ensure Tensor type after `decollate`\n", + " EnsureTyped(keys=[\"pred\", \"seg\"]), # ensure Tensor type after `decollate`\n", " Activationsd(keys=\"pred\", sigmoid=True),\n", " Invertd(\n", " keys=\"pred\", # invert the `pred` data field, also support multiple fields\n", @@ -353,7 +353,7 @@ }, { "cell_type": "code", - "execution_count": 12, + "execution_count": 8, "metadata": { "pycharm": { "is_executing": true