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NAMESPACE
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93 lines (92 loc) · 2.5 KB
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# Generated by roxygen2: do not edit by hand
export(MetaboCrates_gui)
export(add_group)
export(build_model)
export(calculate_CV)
export(check_values)
export(complete_data)
export(create_PCA_plot)
export(create_beeswarm_plot)
export(create_boxplot)
export(create_correlations_heatmap)
export(create_distribution_plot)
export(create_empirical_qqplot)
export(create_plot_of_2_metabolites)
export(create_qqplot)
export(create_venn_diagram)
export(get_CV_to_remove)
export(get_LOD_to_remove)
export(get_example_data)
export(get_info)
export(get_model_summary)
export(pca_variance)
export(plot_NA_percent)
export(plot_groups)
export(plot_heatmap)
export(plot_mv_types)
export(predict_probability)
export(raw_data)
export(read_data)
export(remove_metabolites)
export(show_data)
export(show_ratios)
export(unremove_all)
export(unremove_metabolites)
import(dplyr)
import(ggfortify)
import(ggplot2)
importFrom(SLOPE,SLOPE)
importFrom(SLOPE,trainSLOPE)
importFrom(ggbeeswarm,geom_beeswarm)
importFrom(ggbeeswarm,geom_quasirandom)
importFrom(ggbeeswarm,position_quasirandom)
importFrom(ggiraph,geom_col_interactive)
importFrom(ggiraph,geom_point_interactive)
importFrom(ggiraph,geom_segment_interactive)
importFrom(ggiraph,geom_tile_interactive)
importFrom(ggiraph,girafe)
importFrom(ggiraph,opts_sizing)
importFrom(ggiraph,opts_toolbar)
importFrom(ggiraph,opts_tooltip)
importFrom(ggiraph,opts_zoom)
importFrom(ggplot2,aes)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,labs)
importFrom(ggrepel,geom_text_repel)
importFrom(ggvenn,ggvenn)
importFrom(glmnet,cv.glmnet)
importFrom(glmnet,glmnet)
importFrom(grDevices,colorRampPalette)
importFrom(logspline,logspline)
importFrom(logspline,rlogspline)
importFrom(patchwork,area)
importFrom(patchwork,plot_layout)
importFrom(plotROC,calc_auc)
importFrom(plotROC,geom_roc)
importFrom(readxl,read_excel)
importFrom(reshape2,melt)
importFrom(scales,percent)
importFrom(shiny,runApp)
importFrom(stats,cor)
importFrom(stats,density)
importFrom(stats,ecdf)
importFrom(stats,na.omit)
importFrom(stats,prcomp)
importFrom(stats,predict)
importFrom(stats,quantile)
importFrom(stats,reorder)
importFrom(stats,runif)
importFrom(stats,sd)
importFrom(stats,setNames)
importFrom(stringi,stri_detect_fixed)
importFrom(stringr,str_detect)
importFrom(stringr,str_extract)
importFrom(stringr,str_trunc)
importFrom(tidyr,drop_na)
importFrom(tidyr,gather)
importFrom(tidyr,pivot_longer)
importFrom(tidyr,pivot_wider)
importFrom(tidyr,spread)
importFrom(tools,file_ext)
importFrom(tools,package_dependencies)
importFrom(utils,available.packages)