De-novo-design-of-antibacterial-cell-penetrating-peptides-using-structure-aware-generative-modelling/requirements.txt at main · BackofenLab/De-novo-design-of-antibacterial-cell-penetrating-peptides-using-structure-aware-generative-modelling · GitHub

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altair==5.5.0
asttokens==3.0.0
attrs==25.3.0
backcall==0.2.0
beautifulsoup4==4.13.4
biopython==1.85
blinker==1.9.0
boto3==1.38.23
botocore==1.38.23
Bottleneck==1.4.2
cachetools==6.1.0
certifi==2025.4.26
charset-normalizer==3.4.1
click==8.2.1
colorama==0.4.6
contourpy==1.3.2
cycler==0.12.1
decorator==5.2.1
executing==2.2.0
filelock==3.18.0
fonttools==4.58.0
fsspec==2025.3.2
gitdb==4.0.12
GitPython==3.1.45
hdbscan==0.8.40
huggingface-hub==0.30.2
idna==3.10
ipython_pygments_lexers==1.1.1
jedi==0.19.2
Jinja2==3.1.6
jmespath==1.0.1
joblib==1.4.2
jsonschema==4.25.0
jsonschema-specifications==2025.4.1
kiwisolver==1.4.8
llvmlite==0.44.0
MarkupSafe==3.0.2
matplotlib==3.10.3
matplotlib-inline==0.1.7
mkl_fft==1.3.11
mkl_random==1.2.8
mkl-service==2.4.0
mpmath==1.3.0
narwhals==1.40.0
networkx==3.4.2
numba==0.61.2
numexpr==2.10.1
numpy==2.0.1
packaging==25.0
pandas==2.2.3
parasail==1.3.4
parso==0.8.4
pickleshare==0.7.5
pillow==11.2.1
pip==25.0
plotly==6.1.1
ply==3.11
Pmw==2.0.1
prompt_toolkit==3.0.51
protobuf==6.31.1
pure_eval==0.2.3
py3Dmol==2.5.1
pyarrow==21.0.0
pydeck==0.9.1
Pygments==2.19.1
pymol==3.1.0
pynndescent==0.5.13
pyparsing==3.2.3
PyQt5==5.15.11
PyQt5_sip==12.17.0
python-dateutil==2.9.0.post0
pytz==2024.1
PyYAML==6.0.2
rdkit==2024.9.6
referencing==0.36.2
regex==2024.11.6
requests==2.32.3
rpds-py==0.26.0
s3transfer==0.13.0
safetensors==0.5.3
scikit-learn==1.6.1
scipy==1.15.2
seaborn==0.13.2
sentencepiece==0.2.0
setuptools==75.8.0
sip==6.10.0
six==1.17.0
smmap==5.0.2
soupsieve==2.7
stack-data==0.6.3
streamlit==1.47.1
sympy==1.14.0
tenacity==9.1.2
threadpoolctl==3.5.0
tokenizers==0.21.1
toml==0.10.2
tomli==2.2.1
torch==2.7.0
tornado==6.5.1
tqdm==4.67.1
traitlets==5.14.3
transformers==4.51.3
typing_extensions==4.13.2
tzdata==2023.3
umap-learn==0.5.9.post2
urllib3==2.4.0
watchdog==6.0.0
wcwidth==0.2.13
wheel==0.45.1
xlsxwriter==3.2.5