diff --git a/.github/workflows/test_and_deploy.yml b/.github/workflows/test_and_deploy.yml index 716887b8..1a8b0e5b 100644 --- a/.github/workflows/test_and_deploy.yml +++ b/.github/workflows/test_and_deploy.yml @@ -22,7 +22,7 @@ jobs: matrix: # platform: [ubuntu-latest, windows-latest] # , macos-latest platform: [ubuntu-latest] - python-version: ['3.8', '3.9', '3.10'] + python-version: ['3.8', '3.9'] #issues with monai and 3.10; pausing for now. users should use python 3.9 steps: - uses: actions/checkout@v3 diff --git a/README.md b/README.md index 115bea75..4579c9e8 100644 --- a/README.md +++ b/README.md @@ -104,7 +104,7 @@ To avoid issues when installing on the ARM64 architecture, please follow these s git clone https://github.com/AdaptiveMotorControlLab/CellSeg3d.git cd CellSeg3d - conda env create -f conda/CellSeg3D_ARM64.yml + conda env create -f conda/napari_CellSeg3D_ARM64.yml conda activate napari_CellSeg3D_ARM64 diff --git a/napari_cellseg3d/_tests/test_plugin_training.py b/napari_cellseg3d/_tests/test_plugin_training.py index 7ea61200..32edd0e0 100644 --- a/napari_cellseg3d/_tests/test_plugin_training.py +++ b/napari_cellseg3d/_tests/test_plugin_training.py @@ -1,5 +1,7 @@ from pathlib import Path +from monai.utils import set_determinism + from napari_cellseg3d import config from napari_cellseg3d.code_plugins.plugin_model_training import ( Trainer, @@ -11,6 +13,7 @@ def test_worker_configs(make_napari_viewer_proxy): + set_determinism(seed=0) viewer = make_napari_viewer_proxy() widget = Trainer(viewer=viewer) # test supervised config and worker