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model.py
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201 lines (171 loc) · 7.34 KB
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import torch
import torch.nn as nn
import torch.nn.functional as F
from torch_geometric.nn import SAGEConv
from graph import mark_as_pipeline_stage, mark_as_ghost_stage
class CustomGraphSAGEModel(nn.Module):
def __init__(self, in_channels, hidden_channels, out_channels, num_layers=4):
super(CustomGraphSAGEModel, self).__init__()
assert num_layers >= 1, "num_layers must be at least 1"
# print(f'in_channels: {in_channels}, hidden_channels: {hidden_channels}, out_channels: {out_channels}, num_layers: {num_layers}')
self.num_layers = num_layers
# Initialize the first convolutional chain
for i in range(num_layers):
if i == 0:
setattr(
self,
f"chain1_conv_{i}",
mark_as_pipeline_stage(SAGEConv(in_channels, hidden_channels)),
)
else:
setattr(
self,
f"chain1_conv_{i}",
mark_as_pipeline_stage(SAGEConv(hidden_channels, hidden_channels)),
)
setattr(
self,
f"chain1_residual_{i-1}",
mark_as_ghost_stage(nn.Linear(hidden_channels, hidden_channels)),
)
# Initialize the second convolutional chain
for i in range(num_layers):
if i == 0:
setattr(
self,
f"chain2_conv_{i}",
mark_as_pipeline_stage(SAGEConv(in_channels, hidden_channels)),
)
else:
setattr(
self,
f"chain2_conv_{i}",
mark_as_pipeline_stage(SAGEConv(hidden_channels, hidden_channels)),
)
setattr(
self,
f"chain2_residual_{i-1}",
mark_as_ghost_stage(nn.Linear(hidden_channels, hidden_channels)),
)
# Final convolutional layer to combine both chains
self.final_conv = mark_as_pipeline_stage(
SAGEConv(2 * hidden_channels, out_channels)
)
def forward(self, x, edge_index):
# Forward pass through the first chain
x1 = x
for i in range(self.num_layers):
conv = getattr(self, f"chain1_conv_{i}")
if i > 0:
residual = getattr(self, f"chain1_residual_{i-1}")(x1)
else:
residual = 0
x1 = conv(x1, edge_index) + residual
if i < self.num_layers - 1:
x1 = F.relu(x1)
x1 = F.dropout(x1, p=0.5, training=self.training)
# Forward pass through the second chain
x2 = x
for i in range(self.num_layers):
conv = getattr(self, f"chain2_conv_{i}")
if i > 0:
residual = getattr(self, f"chain2_residual_{i-1}")(x2)
else:
residual = 0
x2 = conv(x2, edge_index) + residual
if i < self.num_layers - 1:
x2 = F.relu(x2)
x2 = F.dropout(x2, p=0.5, training=self.training)
combined = torch.cat([x1, x2], dim=1)
# Final pass through the combined layers
out = self.final_conv(combined, edge_index)
return F.log_softmax(out, dim=1)
class CustomGraphLinearModel(nn.Module):
def __init__(self, in_channels, hidden_channels, out_channels):
super(CustomGraphLinearModel, self).__init__()
# First chain layers
self.chain1_linear_0 = mark_as_pipeline_stage(
nn.Linear(in_channels, hidden_channels)
)
self.chain1_linear_1 = mark_as_pipeline_stage(
nn.Linear(hidden_channels, hidden_channels)
)
self.chain1_linear_2 = mark_as_pipeline_stage(
nn.Linear(hidden_channels, hidden_channels)
)
self.chain1_linear_3 = mark_as_pipeline_stage(
nn.Linear(hidden_channels, hidden_channels)
)
# Second chain layers
self.chain2_linear_0 = mark_as_pipeline_stage(
nn.Linear(in_channels, hidden_channels)
)
self.chain2_linear_1 = mark_as_pipeline_stage(
nn.Linear(hidden_channels, hidden_channels)
)
self.chain2_linear_2 = mark_as_pipeline_stage(
nn.Linear(hidden_channels, hidden_channels)
)
self.chain2_linear_3 = mark_as_pipeline_stage(
nn.Linear(hidden_channels, hidden_channels)
)
# Final layer to combine both chains
self.final_linear = mark_as_pipeline_stage(
nn.Linear(2 * hidden_channels, out_channels)
)
def forward(self, x):
# First chain forward pass
x1 = F.relu(self.chain1_linear_0(x))
x1 = F.dropout(x1, p=0.5, training=self.training)
x1 = F.relu(self.chain1_linear_1(x1))
x1 = F.dropout(x1, p=0.5, training=self.training)
x1 = F.relu(self.chain1_linear_2(x1))
x1 = F.dropout(x1, p=0.5, training=self.training)
x1 = self.chain1_linear_3(x1) # No activation or dropout after final layer
# Second chain forward pass
x2 = F.relu(self.chain2_linear_0(x))
x2 = F.dropout(x2, p=0.5, training=self.training)
x2 = F.relu(self.chain2_linear_1(x2))
x2 = F.dropout(x2, p=0.5, training=self.training)
x2 = F.relu(self.chain2_linear_2(x2))
x2 = F.dropout(x2, p=0.5, training=self.training)
x2 = self.chain2_linear_3(x2) # No activation or dropout after final layer
# Combine both chains
combined = torch.cat([x1, x2], dim=1)
# Final linear layer
out = self.final_linear(combined)
return F.log_softmax(out, dim=1)
class CustomGraphLinearModel2(nn.Module):
def __init__(self, in_channels, hidden_channels, out_channels):
super(CustomGraphLinearModel2, self).__init__()
# First chain layers
self.chain1_linear_0 = mark_as_pipeline_stage(
nn.Linear(in_channels, hidden_channels)
)
self.chain1_linear_1 = mark_as_pipeline_stage(
nn.Linear(hidden_channels, hidden_channels)
)
self.chain1_linear_2 = mark_as_pipeline_stage(
nn.Linear(hidden_channels, hidden_channels)
)
# self.chain2_linear_0 = mark_as_pipeline_stage(nn.Linear(in_channels, hidden_channels))
# self.chain2_linear_1 = mark_as_pipeline_stage(nn.Linear(hidden_channels, hidden_channels))
# self.chain2_linear_2 = mark_as_pipeline_stage(nn.Linear(hidden_channels, hidden_channels))
self.final_linear = mark_as_pipeline_stage(
nn.Linear(hidden_channels, out_channels)
)
def forward(self, x):
# First chain forward pass
x1 = F.relu(self.chain1_linear_0(x))
x1 = F.dropout(x1, p=0.5, training=self.training)
x1 = F.relu(self.chain1_linear_1(x1))
x1 = F.dropout(x1, p=0.5, training=self.training)
x1 = F.relu(self.chain1_linear_2(x1))
# x2 = F.relu(self.chain2_linear_0(x))
# x2 = F.dropout(x2, p=0.5, training=self.training)
# x2 = F.relu(self.chain2_linear_1(x2))
# x2 = F.dropout(x2, p=0.5, training=self.training)
# x2 = F.relu(self.chain2_linear_2(x2))
# combined = torch.cat([x1, x2], dim=1)
x3 = F.relu(self.final_linear(x1))
return F.log_softmax(x3, dim=1)